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Kirill Lobachev - Publications

Affiliations: 
Georgia Institute of Technology, Atlanta, GA 
Area:
Genetics, Molecular Biology, Microbiology Biology
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35 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Ait Saada A, Guo W, Costa AB, Yang J, Wang J, Lobachev KS. Widely spaced and divergent inverted repeats become a potent source of chromosomal rearrangements in long single-stranded DNA regions. Nucleic Acids Research. PMID 36919609 DOI: 10.1093/nar/gkad153  0.583
2022 Osia B, Twarowski J, Jackson T, Lobachev K, Liu L, Malkova A. Migrating bubble synthesis promotes mutagenesis through lesions in its template. Nucleic Acids Research. PMID 35748867 DOI: 10.1093/nar/gkac520  0.375
2021 Ait Saada A, Costa AB, Sheng Z, Guo W, Haber JE, Lobachev KS. Structural parameters of palindromic repeats determine the specificity of nuclease attack of secondary structures. Nucleic Acids Research. PMID 33772579 DOI: 10.1093/nar/gkab168  0.413
2021 Ait Saada A, Costa AB, Lobachev KS. Genetic and Molecular Approaches to Study Chromosomal Breakage at Secondary Structure-Forming Repeats. Methods in Molecular Biology (Clifton, N.J.). 2153: 71-86. PMID 32840773 DOI: 10.1007/978-1-0716-0644-5_6  0.581
2020 Szlachta K, Manukyan A, Raimer HM, Singh S, Salamon A, Guo W, Lobachev KS, Wang YH. Topoisomerase II contributes to DNA secondary structure-mediated double-stranded breaks. Nucleic Acids Research. PMID 32501506 DOI: 10.1093/Nar/Gkaa483  0.498
2018 Kiktev DA, Sheng Z, Lobachev KS, Petes TD. GC content elevates mutation and recombination rates in the yeast . Proceedings of the National Academy of Sciences of the United States of America. PMID 29987035 DOI: 10.1073/Pnas.1807334115  0.41
2017 Elango R, Sheng Z, Jackson J, DeCata J, Ibrahim Y, Pham NT, Liang DH, Sakofsky CJ, Vindigni A, Lobachev KS, Ira G, Malkova A. Break-induced replication promotes formation of lethal joint molecules dissolved by Srs2. Nature Communications. 8: 1790. PMID 29176630 DOI: 10.1038/s41467-017-01987-2  0.429
2017 Dahal BK, Kadyrova LY, Delfino KR, Rogozin IB, Gujar V, Lobachev KS, Kadyrov FA. Involvement of DNA mismatch repair in the maintenance of heterochromatic DNA stability in Saccharomyces cerevisiae. Plos Genetics. 13: e1007074. PMID 29069084 DOI: 10.1371/Journal.Pgen.1007074  0.446
2015 Hang LE, Peng J, Tan W, Szakal B, Menolfi D, Sheng Z, Lobachev K, Branzei D, Feng W, Zhao X. Rtt107 Is a Multi-functional Scaffold Supporting Replication Progression with Partner SUMO and Ubiquitin Ligases. Molecular Cell. PMID 26439300 DOI: 10.1016/J.Molcel.2015.08.023  0.339
2013 Zhang Y, Saini N, Sheng Z, Lobachev KS. Genome-wide screen reveals replication pathway for quasi-palindrome fragility dependent on homologous recombination. Plos Genetics. 9: e1003979. PMID 24339793 DOI: 10.1371/journal.pgen.1003979  0.511
2013 Kadyrova LY, Mertz TM, Zhang Y, Northam MR, Sheng Z, Lobachev KS, Shcherbakova PV, Kadyrov FA. A reversible histone H3 acetylation cooperates with mismatch repair and replicative polymerases in maintaining genome stability. Plos Genetics. 9: e1003899. PMID 24204308 DOI: 10.1371/Journal.Pgen.1003899  0.302
2013 Saini N, Ramakrishnan S, Elango R, Ayyar S, Zhang Y, Deem A, Ira G, Haber JE, Lobachev KS, Malkova A. Migrating bubble during break-induced replication drives conservative DNA synthesis. Nature. 502: 389-92. PMID 24025772 DOI: 10.1038/Nature12584  0.569
2013 Saini N, Zhang Y, Nishida Y, Sheng Z, Choudhury S, Mieczkowski P, Lobachev KS. Fragile DNA motifs trigger mutagenesis at distant chromosomal loci in saccharomyces cerevisiae. Plos Genetics. 9: e1003551. PMID 23785298 DOI: 10.1371/journal.pgen.1003551  0.591
2013 Saini N, Zhang Y, Usdin K, Lobachev KS. When secondary comes first--the importance of non-canonical DNA structures. Biochimie. 95: 117-23. PMID 23084930 DOI: 10.1016/j.biochi.2012.10.005  0.384
2012 Waisertreiger IS, Liston VG, Menezes MR, Kim HM, Lobachev KS, Stepchenkova EI, Tahirov TH, Rogozin IB, Pavlov YI. Modulation of mutagenesis in eukaryotes by DNA replication fork dynamics and quality of nucleotide pools. Environmental and Molecular Mutagenesis. 53: 699-724. PMID 23055184 DOI: 10.1002/Em.21735  0.595
2012 Zhang Y, Shishkin AA, Nishida Y, Marcinkowski-Desmond D, Saini N, Volkov KV, Mirkin SM, Lobachev KS. Genome-wide screen identifies pathways that govern GAA/TTC repeat fragility and expansions in dividing and nondividing yeast cells. Molecular Cell. 48: 254-65. PMID 22959270 DOI: 10.1016/j.molcel.2012.08.002  0.551
2011 Tang W, Dominska M, Greenwell PW, Harvanek Z, Lobachev KS, Kim HM, Narayanan V, Mirkin SM, Petes TD. Friedreich's ataxia (GAA)n•(TTC)n repeats strongly stimulate mitotic crossovers in Saccharomyces cerevisae. Plos Genetics. 7: e1001270. PMID 21249181 DOI: 10.1371/Journal.Pgen.1001270  0.599
2009 Shishkin AA, Voineagu I, Matera R, Cherng N, Chernet BT, Krasilnikova MM, Narayanan V, Lobachev KS, Mirkin SM. Large-scale expansions of Friedreich's ataxia GAA repeats in yeast. Molecular Cell. 35: 82-92. PMID 19595718 DOI: 10.1016/J.Molcel.2009.06.017  0.599
2008 Kim HM, Narayanan V, Mieczkowski PA, Petes TD, Krasilnikova MM, Mirkin SM, Lobachev KS. Chromosome fragility at GAA tracts in yeast depends on repeat orientation and requires mismatch repair. The Embo Journal. 27: 2896-906. PMID 18833189 DOI: 10.1038/Emboj.2008.205  0.686
2008 Voineagu I, Narayanan V, Lobachev KS, Mirkin SM. Replication stalling at unstable inverted repeats: interplay between DNA hairpins and fork stabilizing proteins. Proceedings of the National Academy of Sciences of the United States of America. 105: 9936-41. PMID 18632578 DOI: 10.1073/Pnas.0804510105  0.593
2008 Vernon M, Lobachev K, Petes TD. High rates of "unselected" aneuploidy and chromosome rearrangements in tel1 mec1 haploid yeast strains. Genetics. 179: 237-47. PMID 18458104 DOI: 10.1534/Genetics.107.086603  0.614
2007 Narayanan V, Lobachev KS. Intrachromosomal gene amplification triggered by hairpin-capped breaks requires homologous recombination and is independent of nonhomologous end-joining. Cell Cycle (Georgetown, Tex.). 6: 1814-8. PMID 17671429 DOI: 10.4161/Cc.6.15.4522  0.678
2007 Lobachev KS, Rattray A, Narayanan V. Hairpin- and cruciform-mediated chromosome breakage: causes and consequences in eukaryotic cells. Frontiers in Bioscience : a Journal and Virtual Library. 12: 4208-20. PMID 17485368 DOI: 10.2741/2381  0.666
2007 VanHulle K, Lemoine FJ, Narayanan V, Downing B, Hull K, McCullough C, Bellinger M, Lobachev K, Petes TD, Malkova A. Inverted DNA repeats channel repair of distant double-strand breaks into chromatid fusions and chromosomal rearrangements. Molecular and Cellular Biology. 27: 2601-14. PMID 17242181 DOI: 10.1128/Mcb.01740-06  0.702
2007 Voineagu I, Lobachev K, Mirkin S. 67 REPLICATION OF DNA PALINDROMES AND CHROMOSOMAL INSTABILITY. Journal of Investigative Medicine. 55: S359.4-S359. DOI: 10.1136/jim-55-02-67  0.584
2006 Narayanan V, Mieczkowski PA, Kim HM, Petes TD, Lobachev KS. The pattern of gene amplification is determined by the chromosomal location of hairpin-capped breaks. Cell. 125: 1283-96. PMID 16814715 DOI: 10.1016/J.Cell.2006.04.042  0.672
2005 Lewis LK, Lobachev K, Westmoreland JW, Karthikeyan G, Williamson KM, Jordan JJ, Resnick MA. Use of a restriction endonuclease cytotoxicity assay to identify inducible GAL1 promoter variants with reduced basal activity. Gene. 363: 183-92. PMID 16289630 DOI: 10.1016/J.Gene.2005.09.007  0.344
2005 Lemoine FJ, Degtyareva NP, Lobachev K, Petes TD. Chromosomal translocations in yeast induced by low levels of DNA polymerase a model for chromosome fragile sites. Cell. 120: 587-98. PMID 15766523 DOI: 10.1016/J.Cell.2004.12.039  0.62
2004 Lobachev K, Vitriol E, Stemple J, Resnick MA, Bloom K. Chromosome fragmentation after induction of a double-strand break is an active process prevented by the RMX repair complex. Current Biology : Cb. 14: 2107-12. PMID 15589152 DOI: 10.1016/J.Cub.2004.11.051  0.622
2002 Lobachev KS, Gordenin DA, Resnick MA. The Mre11 complex is required for repair of hairpin-capped double-strand breaks and prevention of chromosome rearrangements. Cell. 108: 183-93. PMID 11832209 DOI: 10.1016/S0092-8674(02)00614-1  0.527
2001 Bennett CB, Lewis LK, Karthikeyan G, Lobachev KS, Jin YH, Sterling JF, Snipe JR, Resnick MA. Genes required for ionizing radiation resistance in yeast. Nature Genetics. 29: 426-34. PMID 11726929 DOI: 10.1038/Ng778  0.438
2001 Stenger JE, Lobachev KS, Gordenin D, Darden TA, Jurka J, Resnick MA. Biased distribution of inverted and direct Alus in the human genome: implications for insertion, exclusion, and genome stability. Genome Research. 11: 12-27. PMID 11156612 DOI: 10.1101/Gr.158801  0.317
2000 Lobachev KS, Stenger JE, Kozyreva OG, Jurka J, Gordenin DA, Resnick MA. Inverted Alu repeats unstable in yeast are excluded from the human genome. The Embo Journal. 19: 3822-30. PMID 10899135 DOI: 10.1093/Emboj/19.14.3822  0.473
1999 Gary R, Park MS, Nolan JP, Cornelius HL, Kozyreva OG, Tran HT, Lobachev KS, Resnick MA, Gordenin DA. A novel role in DNA metabolism for the binding of Fen1/Rad27 to PCNA and implications for genetic risk. Molecular and Cellular Biology. 19: 5373-82. PMID 10409728 DOI: 10.1128/Mcb.19.8.5373  0.306
1993 Gordenin DA, Lobachev KS, Degtyareva NP, Malkova AL, Perkins E, Resnick MA. Inverted DNA repeats: A source of eukaryotic genomic instability Molecular and Cellular Biology. 13: 5315-5322. PMID 8395002 DOI: 10.1128/Mcb.13.9.5315  0.494
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