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James A. Goodrich - Publications

Affiliations: 
University of Colorado, Boulder, Boulder, CO, United States 
Area:
Biochemistry
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Year Citation  Score
2023 Suwita JP, Voong CK, Ly E, Goodrich JA, Kugel JF. Single molecule studies characterize the kinetic mechanism of tetrameric p53 binding to different native response elements. Plos One. 18: e0286193. PMID 37582100 DOI: 10.1371/journal.pone.0286193  0.66
2023 Miller GM, Brant TS, Goodrich JA, Kugel JF. Short-term exposure to ethanol induces transcriptional changes in nontumorigenic breast cells. Febs Open Bio. PMID 37572351 DOI: 10.1002/2211-5463.13693  0.591
2023 Hemphill WO, Voong CK, Fenske R, Goodrich JA, Cech TR. Multiple RNA- and DNA-binding proteins exhibit direct transfer of polynucleotides with implications for target-site search. Proceedings of the National Academy of Sciences of the United States of America. 120: e2220537120. PMID 37339225 DOI: 10.1073/pnas.2220537120  0.388
2021 Voong CK, Goodrich JA, Kugel JF. Interactions of HMGB Proteins with the Genome and the Impact on Disease. Biomolecules. 11. PMID 34680084 DOI: 10.3390/biom11101451  0.668
2021 Rivas T, Goodrich JA, Kugel JF. The herpes simplex virus 1 protein ICP4 acts as both an activator and repressor of host genome transcription during infection. Molecular and Cellular Biology. MCB0017121. PMID 34251885 DOI: 10.1128/MCB.00171-21  0.681
2020 Ly E, Kugel JF, Goodrich JA. Single molecule studies reveal that p53 tetramers dynamically bind response elements containing one or two half sites. Scientific Reports. 10: 16176. PMID 32999415 DOI: 10.1038/s41598-020-73234-6  0.651
2020 Ly E, Powell AE, Goodrich JA, Kugel JF. Release of Human TFIIB from Actively Transcribing Complexes Is Triggered upon Synthesis of 7 Nt and 9 Nt RNAs. Journal of Molecular Biology. PMID 32417370 DOI: 10.1016/J.Jmb.2020.05.005  0.744
2020 Salant GM, Tat KL, Goodrich JA, Kugel JF. miR-206 knockout shows it is critical for myogenesis and directly regulates newly identified target mRNAs. Rna Biology. PMID 32129700 DOI: 10.1080/15476286.2020.1737443  0.591
2019 Greene E, Flees J, Dhamad A, Alrubaye A, Hennigan S, Pleimann J, Smeltzer M, Murray S, Kugel J, Goodrich J, Robertson A, Wideman R, Rhoads D, Dridi S. Double-stranded RNA is a novel molecular target in osteomyelitis pathogenesis: a translational avian model for human bacterial chondronecrosis with osteomyelitis. The American Journal of Pathology. PMID 31381888 DOI: 10.1016/J.Ajpath.2019.06.013  0.643
2019 Ly E, Goodrich JA, Kugel JF. Monitoring transcriptional activity by RNA polymerase II in vitro using single molecule co-localization. Methods (San Diego, Calif.). PMID 30876965 DOI: 10.1016/J.Ymeth.2019.03.006  0.788
2018 Cardiello JF, Goodrich JA, Kugel JF. Heat shock causes a reversible increase in RNA polymerase II occupancy downstream of mRNA genes consistent with a global loss in transcriptional termination. Molecular and Cellular Biology. PMID 29967245 DOI: 10.1128/Mcb.00181-18  0.738
2018 Goodrich J, Taatjes D. Transcription regulation enters a new phase. Nature. 558: 197-198. PMID 29895907 DOI: 10.1038/D41586-018-05244-4  0.378
2017 Kugel JF, Goodrich JA. Finding the start site: redefining the human initiator element. Genes & Development. 31: 1-2. PMID 28130343 DOI: 10.1101/Gad.295980.117  0.752
2017 Horn AE, Kugel JF, Goodrich JA. Understanding the Mechanisms of Human RNA Polymerase II Transcription using Single Molecule Fluorescence Colocalization Biophysical Journal. 112: 211a-212a. DOI: 10.1016/J.Bpj.2016.11.1167  0.779
2016 Abrisch RG, Eidem TM, Yakovchuk P, Kugel JF, Goodrich JA. Correction for Abrisch et al., Infection by Herpes Simplex Virus 1 Causes Near-Complete Loss of RNA Polymerase II Occupancy on the Host Cell Genome. Journal of Virology. 90: 11279. PMID 27895185 DOI: 10.1128/Jvi.01903-16  0.75
2016 Blair RH, Horn AE, Pazhani Y, Grado L, Goodrich JA, Kugel JF. The HMGB1 C-terminal tail regulates DNA bending. Journal of Molecular Biology. PMID 27558111 DOI: 10.1016/J.Jmb.2016.08.018  0.747
2016 Horn AE, Kugel JF, Goodrich JA. Single molecule microscopy reveals mechanistic insight into RNA polymerase II preinitiation complex assembly and transcriptional activity. Nucleic Acids Research. PMID 27112574 DOI: 10.1093/Nar/Gkw321  0.797
2016 Eidem TM, Kugel JF, Goodrich JA. Noncoding RNAs: Regulators of the Mammalian Transcription Machinery. Journal of Molecular Biology. PMID 26920110 DOI: 10.1016/J.Jmb.2016.02.019  0.823
2015 Abrisch RG, Eidem TM, Yakovchuk P, Kugel JF, Goodrich JA. Infection by Herpes Simplex Virus Type-1 Causes Near-Complete Loss of RNA Polymerase II Occupancy on the Host Cell Genome. Journal of Virology. PMID 26676778 DOI: 10.1128/Jvi.02665-15  0.722
2015 Ponicsan SL, Kugel JF, Goodrich JA. Repression of RNA Polymerase II Transcription by B2 RNA Depends on a Specific Pattern of Structural Regions in the RNA. Non-Coding Rna. 1: 4-16. PMID 26405685 DOI: 10.3390/Ncrna1010004  0.863
2015 Goodrich JA, Kugel JF. Studying the affinity, kinetic stability, and specificity of RNA/protein interactions: SINE ncRNA/Pol II complexes as a model system Methods in Molecular Biology. 1206: 165-178. PMID 25240896 DOI: 10.1007/978-1-4939-1369-5_15  0.745
2014 Horn AE, Goodrich JA, Kugel JF. Single molecule studies of RNA polymerase II transcription in vitro. Transcription. 5: e27608. PMID 25764112 DOI: 10.4161/trns.27608  0.772
2014 Cardiello JF, Kugel JF, Goodrich JA. A new twist on cell growth control. Cell Cycle (Georgetown, Tex.). 13: 3474-5. PMID 25493414 DOI: 10.4161/15384101.2014.980702  0.804
2014 Walters RD, McSwiggen DT, Goodrich JA, Kugel JF. Selection and characterization of a DNA aptamer that can discriminate between cJun/cJun and cJun/cFos. Plos One. 9: e101015. PMID 24968026 DOI: 10.1371/Journal.Pone.0101015  0.738
2014 Horn AE, Goodrich JA, Kugel JF. Single molecule studies of RNA polymerase II transcription in vitro. Transcription. 5. PMID 24406345  0.772
2014 Horn AE, Goodrich JA, Kugel JF. Single molecule studies of RNA polymerase II transcription in vitro Transcription. 5. DOI: 10.4161/trns.27608  0.776
2014 Cardiello JF, Kugel JF, Goodrich JA. A new twist on cell growth control Cell Cycle. 13: 3474-3475. DOI: 10.4161/15384101.2014.980702  0.551
2014 Walters RD, McSwiggen DT, Goodrich JA, Kugel JF. Selection and characterization of a DNA Aptamer that can discriminate between cJun/cJun and cJun/cFos Plos One. 9. DOI: 10.1371/journal.pone.0101015  0.682
2013 Walters RD, Drullinger LF, Kugel JF, Goodrich JA. NFATc2 recruits cJun homodimers to an NFAT site to synergistically activate interleukin-2 transcription Molecular Immunology. 56: 48-56. PMID 23665382 DOI: 10.1016/J.Molimm.2013.03.022  0.755
2013 Blair RH, Goodrich JA, Kugel JF. Using FRET to monitor protein-induced DNA bending: the TBP-TATA complex as a model system. Methods in Molecular Biology (Clifton, N.J.). 977: 203-15. PMID 23436364 DOI: 10.1007/978-1-62703-284-1_16  0.744
2013 Ponicsan SL, Houel S, Old WM, Ahn NG, Goodrich JA, Kugel JF. The non-coding B2 RNA binds to the DNA cleft and active-site region of RNA polymerase II Journal of Molecular Biology. 425: 3625-3638. PMID 23416138 DOI: 10.1016/J.Jmb.2013.01.035  0.861
2013 Kugel JF, Goodrich JA. The regulation of mammalian mRNA transcription by lncRNAs: Recent discoveries and current concepts Epigenomics. 5: 95-102. PMID 23414324 DOI: 10.2217/Epi.12.69  0.772
2013 Wagner SD, Yakovchuk P, Gilman B, Ponicsan SL, Drullinger LF, Kugel JF, Goodrich JA. RNA polymerase II acts as an RNA-dependent RNA polymerase to extend and destabilize a non-coding RNA. The Embo Journal. 32: 781-90. PMID 23395899 DOI: 10.1038/Emboj.2013.18  0.841
2013 Kassube SA, Fang J, Grob P, Yakovchuk P, Goodrich JA, Nogales E. Structural insights into transcriptional repression by noncoding RNAs that bind to human Pol II. Journal of Molecular Biology. 425: 3639-48. PMID 22954660 DOI: 10.1016/J.Jmb.2012.08.024  0.634
2012 Blair RH, Goodrich JA, Kugel JF. Single-molecule fluorescence resonance energy transfer shows uniformity in TATA binding protein-induced DNA bending and heterogeneity in bending kinetics. Biochemistry. 51: 7444-55. PMID 22934924 DOI: 10.1021/Bi300491J  0.763
2012 Dridi S, Hirano Y, Tarallo V, Kim Y, Fowler BJ, Ambati BK, Bogdanovich S, Chiodo VA, Hauswirth WW, Kugel JF, Goodrich JA, Ponicsan SL, Hinton DR, Kleinman ME, Baffi JZ, et al. ERK1/2 activation is a therapeutic target in age-related macular degeneration. Proceedings of the National Academy of Sciences of the United States of America. 109: 13781-6. PMID 22869729 DOI: 10.1073/Pnas.1206494109  0.789
2012 Tarallo V, Hirano Y, Gelfand BD, Dridi S, Kerur N, Kim Y, Cho WG, Kaneko H, Fowler BJ, Bogdanovich S, Albuquerque RJ, Hauswirth WW, Chiodo VA, Kugel JF, Goodrich JA, et al. DICER1 loss and Alu RNA induce age-related macular degeneration via the NLRP3 inflammasome and MyD88. Cell. 149: 847-59. PMID 22541070 DOI: 10.1016/J.Cell.2012.03.036  0.807
2012 Kugel JF, Goodrich JA. Non-coding RNAs: Key regulators of mammalian transcription Trends in Biochemical Sciences. 37: 144-151. PMID 22300815 DOI: 10.1016/J.Tibs.2011.12.003  0.759
2011 Yakovchuk P, Goodrich JA, Kugel JF. B2 RNA represses TFIIH phosphorylation of RNA polymerase II Transcription. 2: 45-49. PMID 21326911 DOI: 10.4161/trns.2.1.14306  0.788
2011 Kaneko H, Dridi S, Tarallo V, Gelfand BD, Fowler BJ, Cho WG, Kleinman ME, Ponicsan SL, Hauswirth WW, Chiodo VA, Karikó K, Yoo JW, Lee DK, Hadziahmetovic M, Song Y, ... ... Goodrich JA, et al. DICER1 deficit induces Alu RNA toxicity in age-related macular degeneration. Nature. 471: 325-30. PMID 21297615 DOI: 10.1038/Nature09830  0.814
2011 Titov DV, Gilman B, He QL, Bhat S, Low WK, Dang Y, Smeaton M, Demain AL, Miller PS, Kugel JF, Goodrich JA, Liu JO. XPB, a subunit of TFIIH, is a target of the natural product triptolide. Nature Chemical Biology. 7: 182-8. PMID 21278739 DOI: 10.1038/Nchembio.522  0.743
2010 Goodrich JA, Tjian R. Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation. Nature Reviews. Genetics. 11: 549-58. PMID 20628347 DOI: 10.1038/Nrg2847  0.595
2010 Nguyen TN, Kim LJ, Walters RD, Drullinger LF, Lively TN, Kugel JF, Goodrich JA. The C-terminal region of human NFATc2 binds cJun to synergistically activate interleukin-2 transcription Molecular Immunology. 47: 2314-2322. PMID 20557936 DOI: 10.1016/J.Molimm.2010.05.287  0.799
2010 Goodrich JA, Kugel JF. Genome-wide insights into eukaryotic transcriptional control. Genome Biology. 11: 305. PMID 20529212 DOI: 10.1186/Gb-2010-11-6-305  0.698
2010 Goodrich JA, Kugel JF. Dampening DNA binding: A common mechanism of transcriptional repression for both ncRNAs and protein domains Rna Biology. 7. PMID 20436282 DOI: 10.4161/Rna.7.3.11910  0.82
2010 Ponicsan SL, Kugel JF, Goodrich JA. Genomic gems: SINE RNAs regulate mRNA production Current Opinion in Genetics and Development. 20: 149-155. PMID 20176473 DOI: 10.1016/J.Gde.2010.01.004  0.86
2010 Yakovchuk P, Gilman B, Goodrich JA, Kugel JF. RNA Polymerase II and TAFs Undergo a Slow Isomerization after the Polymerase Is Recruited to Promoter-Bound TFIID Journal of Molecular Biology. 397: 57-68. PMID 20083121 DOI: 10.1016/J.Jmb.2010.01.025  0.794
2010 Wagner SD, Kugel JF, Goodrich JA. TFIIF facilitates dissociation of RNA polymerase II from noncoding RNAs that lack a repression domain Molecular and Cellular Biology. 30: 91-97. PMID 19841064 DOI: 10.1128/Mcb.01115-09  0.865
2009 Walters RD, Kugel JF, Goodrich JA. InvAluable junk: The cellular impact and function of Alu and B2 RNAs Iubmb Life. 61: 831-837. PMID 19621349 DOI: 10.1002/Iub.227  0.832
2009 Kugel JF, Goodrich JA. In new company: U1 snRNA associates with TAF15 Embo Reports. 10: 454-456. PMID 19373252 DOI: 10.1038/Embor.2009.65  0.734
2009 Yakovchuk P, Goodrich JA, Kugel JF. B2 RNA and Alu RNA repress transcription by disrupting contacts between RNA polymerase II and promoter DNA within assembled complexes Proceedings of the National Academy of Sciences of the United States of America. 106: 5569-5574. PMID 19307572 DOI: 10.1073/Pnas.0810738106  0.83
2009 Gilman B, Drullinger LF, Kugel JF, Goodrich JA. TATA-binding protein and transcription factor IIB induce transcript slipping during early transcription by RNA polymerase II Journal of Biological Chemistry. 284: 9093-9098. PMID 19193635 DOI: 10.1074/Jbc.M900019200  0.811
2009 Goodrich JA, Kugel JF. From bacteria to humans, chromatin to elongation, and activation to repression: The expanding roles of noncoding RNAs in regulating transcription roles of noncoding RNAs in regulating transcription J. A. Goodrich and J. F. Kugel Critical Reviews in Biochemistry and Molecular Biology. 44: 3-15. PMID 19107624 DOI: 10.1080/10409230802593995  0.785
2009 Carpenter AE, Hieb AR, Betterton MD, Goodrich JA, Perkins TT. Human TBP Bending of DNA Measured at the Single Molecule Level Biophysical Journal. 96: 57a. DOI: 10.1016/J.Bpj.2008.12.190  0.77
2008 Mariner PD, Walters RD, Espinoza CA, Drullinger LF, Wagner SD, Kugel JF, Goodrich JA. Human Alu RNA Is a Modular Transacting Repressor of mRNA Transcription during Heat Shock Molecular Cell. 29: 499-509. PMID 18313387 DOI: 10.1016/J.Molcel.2007.12.013  0.866
2007 Hieb AR, Halsey WA, Betterton MD, Perkins TT, Kugel JF, Goodrich JA. TFIIA changes the conformation of the DNA in TBP/TATA complexes and increases their kinetic stability. Journal of Molecular Biology. 372: 619-32. PMID 17681538 DOI: 10.1016/J.Jmb.2007.06.061  0.818
2007 Weaver JR, Good K, Walters RD, Kugel JF, Goodrich JA. Characterization of the sequence and architectural constraints of the regulatory and core regions of the human interleukin-2 promoter Molecular Immunology. 44: 2813-2819. PMID 17337059 DOI: 10.1016/J.Molimm.2007.01.027  0.73
2007 Espinoza CA, Goodrich JA, Kugel JF. Characterization of the structure, function, and mechanism of B2 RNA, an ncRNA repressor of RNA polymerase II transcription Rna. 13: 583-596. PMID 17307818 DOI: 10.1261/Rna.310307  0.872
2007 Kugel JF, Goodrich JA. An RNA transcriptional regulator templates its own regulatory RNA Nature Chemical Biology. 3: 89-90. PMID 17235345 DOI: 10.1038/Nchembio0207-89  0.79
2006 Hofmann WA, Vargas GM, Ramchandran R, Stojiljkovic L, Goodrich JA, de Lanerolle P. Nuclear myosin I is necessary for the formation of the first phosphodiester bond during transcription initiation by RNA polymerase II. Journal of Cellular Biochemistry. 99: 1001-9. PMID 16960872 DOI: 10.1002/Jcb.21035  0.649
2006 Hieb AR, Baran S, Goodrich JA, Kugel JF. An 8 nt RNA triggers a rate-limiting shift of RNA polymerase II complexes into elongation Embo Journal. 25: 3100-3109. PMID 16778763 DOI: 10.1038/Sj.Emboj.7601197  0.862
2006 Goodrich JA, Kugel JF. Non-coding-RNA regulators of RNA polymerase II transcription Nature Reviews Molecular Cell Biology. 7: 612-616. PMID 16723972 DOI: 10.1038/Nrm1946  0.792
2006 Kugel JF, Goodrich JA. Beating the Heat: A Translation Factor and an RNA Mobilize the Heat Shock Transcription Factor HSF1 Molecular Cell. 22: 153-154. PMID 16630884 DOI: 10.1016/J.Molcel.2006.04.003  0.734
2006 Nguyen TN, Goodrich JA. Protein-protein interaction assays: eliminating false positive interactions. Nature Methods. 3: 135-9. PMID 16432524 DOI: 10.1038/Nmeth0206-135  0.341
2005 Weaver JR, Kugel JF, Goodrich JA. The sequence at specific positions in the early transcribed region sets the rate of transcript synthesis by RNA polymerase II in vitro Journal of Biological Chemistry. 280: 39860-39869. PMID 16210313 DOI: 10.1074/Jbc.M509376200  0.789
2004 Hofmann WA, Stojiljkovic L, Fuchsova B, Vargas GM, Mavrommatis E, Philimonenko V, Kysela K, Goodrich JA, Lessard JL, Hope TJ, Hozak P, de Lanerolle P. Actin is part of pre-initiation complexes and is necessary for transcription by RNA polymerase II. Nature Cell Biology. 6: 1094-101. PMID 15502823 DOI: 10.1038/Ncb1182  0.543
2004 Allen TA, Von Kaenel S, Goodrich JA, Kugel JF. The SINE-encoded mouse B2 RNA represses mRNA transcription in response to heat shock. Nature Structural & Molecular Biology. 11: 816-21. PMID 15300240 DOI: 10.1038/Nsmb813  0.781
2004 Espinoza CA, Allen TA, Hieb AR, Kugel JF, Goodrich JA. B2 RNA binds directly to RNA polymerase II to repress transcript synthesis. Nature Structural & Molecular Biology. 11: 822-9. PMID 15300239 DOI: 10.1038/Nsmb812  0.86
2004 Lively TN, Nguyen TN, Galasinski SK, Goodrich JA. The basic leucine zipper domain of c-Jun functions in transcriptional activation through interaction with the N terminus of human TATA-binding protein-associated factor-1 (human TAF(II)250). The Journal of Biological Chemistry. 279: 26257-65. PMID 15087451 DOI: 10.1074/Jbc.M400892200  0.812
2003 Kugel JF, Goodrich JA. In Vitro Studies of the Early Steps of RNA Synthesis by Human RNA Polymerase II Methods in Enzymology. 370: 687-701. PMID 14712684 DOI: 10.1016/S0076-6879(03)70056-1  0.797
2002 Galasinski SC, Resing KA, Goodrich JA, Ahn NG. Phosphatase inhibition leads to histone deacetylases 1 and 2 phosphorylation and disruption of corepressor interactions. The Journal of Biological Chemistry. 277: 19618-26. PMID 11919195 DOI: 10.1074/Jbc.M201174200  0.319
2002 Ehley JA, Melander C, Herman D, Baird EE, Ferguson HA, Goodrich JA, Dervan PB, Gottesfeld JM. Promoter scanning for transcription inhibition with DNA-binding polyamides. Molecular and Cellular Biology. 22: 1723-33. PMID 11865052 DOI: 10.1128/Mcb.22.6.1723-1733.2002  0.517
2002 Kugel JF, Goodrich JA. Translocation after synthesis of a four-nucleotide RNA commits RNA polymerase II to promoter escape Molecular and Cellular Biology. 22: 762-773. PMID 11784853 DOI: 10.1128/Mcb.22.3.762-773.2002  0.825
2001 Ferguson HA, Kugel JF, Goodrich JA. Kinetic and mechanistic analysis of the RNA polymerase II transcription reaction at the human interleukin-2 promoter Journal of Molecular Biology. 314: 993-1006. PMID 11743717 DOI: 10.1006/Jmbi.2000.5215  0.766
2001 Ferguson HA, Goodrich JA. Expression and purification of recombinant human c-Fos/c-Jun that is highly active in DNA binding and transcriptional activation in vitro. Nucleic Acids Research. 29: E98. PMID 11600717 DOI: 10.1093/Nar/29.20.E98  0.385
2001 Lively TN, Ferguson HA, Galasinski SK, Seto AG, Goodrich JA. c-Jun binds the N terminus of human TAF(II)250 to derepress RNA polymerase II transcription in vitro. The Journal of Biological Chemistry. 276: 25582-8. PMID 11316804 DOI: 10.1074/Jbc.M100278200  0.854
2001 Kim LJ, Seto AG, Nguyen TN, Goodrich JA. Human Taf(II)130 is a coactivator for NFATp. Molecular and Cellular Biology. 21: 3503-13. PMID 11313476 DOI: 10.1128/Mcb.21.10.3503-3513.2001  0.686
2000 Kim LJ, Ferguson HA, Seto AG, Goodrich JA. Characterization of DNA binding, transcriptional activation, and regulated nuclear association of recombinant human NFATp. Bmc Immunology. 1: 1. PMID 11231878 DOI: 10.1186/1471-2172-1-1  0.686
2000 Kugel JF, Goodrich JA. A kinetic model for the early steps of RNA synthesis by human RNA polymerase II Journal of Biological Chemistry. 275: 40483-40491. PMID 10982810 DOI: 10.1074/Jbc.M006401200  0.816
2000 Galasinski SK, Lively TN, Grebe De Barron A, Goodrich JA. Acetyl coenzyme A stimulates RNA polymerase II transcription and promoter binding by transcription factor IID in the absence of histones. Molecular and Cellular Biology. 20: 1923-30. PMID 10688640 DOI: 10.1128/Mcb.20.6.1923-1930.2000  0.864
1998 Kugel JF, Goodrich JA. Promoter escape limits the rate of RNA polymerase II transcription and is enhanced by TFIIE, TFIIH, and ATP on negatively supercoiled DNA Proceedings of the National Academy of Sciences of the United States of America. 95: 9232-9237. PMID 9689063 DOI: 10.1073/Pnas.95.16.9232  0.803
1997 Thut CJ, Goodrich JA, Tjian R. Repression of p53-mediated transcription by MDM2: a dual mechanism. Genes & Development. 11: 1974-86. PMID 9271120 DOI: 10.1101/Gad.11.15.1974  0.593
1996 Goodrich JA, Cutler G, Tjian R. Contacts in context: promoter specificity and macromolecular interactions in transcription. Cell. 84: 825-30. PMID 8601306 DOI: 10.1016/S0092-8674(00)81061-2  0.724
1995 Klemm RD, Goodrich JA, Zhou S, Tjian R. Molecular cloning and expression of the 32-kDa subunit of human TFIID reveals interactions with VP16 and TFIIB that mediate transcriptional activation. Proceedings of the National Academy of Sciences of the United States of America. 92: 5788-92. PMID 7597030 DOI: 10.1073/Pnas.92.13.5788  0.627
1994 Goodrich JA, Tjian R. Transcription factors IIE and IIH and ATP hydrolysis direct promoter clearance by RNA polymerase II Cell. 77: 145-156. PMID 8156590 DOI: 10.1016/0092-8674(94)90242-9  0.721
1994 Maxon ME, Goodrich JA, Tjian R. Transcription factor IIE binds preferentially to RNA polymerase IIa and recruits TFIIH: A model for promoter clearance Genes and Development. 8: 515-524. PMID 7926747 DOI: 10.1101/Gad.8.5.515  0.739
1994 Goodrich JA, Tjian R. TBP-TAF complexes: selectivity factors for eukaryotic transcription Current Opinion in Cell Biology. 6: 403-409. PMID 7917332 DOI: 10.1016/0955-0674(94)90033-7  0.666
1993 Yokomori K, Admon A, Goodrich JA, Chen JL, Tjian R. Drosophila TFIIA-L is processed into two subunits that are associated with the TBP/TAF complex Genes and Development. 7: 2235-2245. PMID 8224849 DOI: 10.1101/Gad.7.11.2235  0.562
1993 Goodrich JA, Hoey T, Thut CJ, Admon A, Tjian R. Drosophila TAFII40 interacts with both a VP16 activation domain and the basal transcription factor TFIIB. Cell. 75: 519-30. PMID 8221891 DOI: 10.1016/0092-8674(93)90386-5  0.653
1992 Goodrich JA, McClure WR. Regulation of open complex formation at the Escherichia coli galactose operon promoters. Simultaneous interaction of RNA polymerase, gal repressor and CAP/cAMP. Journal of Molecular Biology. 224: 15-29. PMID 1312605 DOI: 10.1016/0022-2836(92)90573-3  0.509
1991 Goodrich JA, McClure WR. Competing promoters in prokaryotic transcription. Trends in Biochemical Sciences. 16: 394-7. PMID 1776166 DOI: 10.1016/0968-0004(91)90162-O  0.584
Low-probability matches (unlikely to be authored by this person)
1990 Goodrich JA, Schwartz ML, McClure WR. Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF). Nucleic Acids Research. 18: 4993-5000. PMID 2205834 DOI: 10.1093/Nar/18.17.4993  0.286
2024 Archuleta SR, Goodrich JA, Kugel JF. Mechanisms and Functions of the RNA Polymerase II General Transcription Machinery during the Transcription Cycle. Biomolecules. 14. PMID 38397413 DOI: 10.3390/biom14020176  0.12
2005 Moyle GJ, Wildfire A, Mandalia S, Mayer H, Goodrich J, Whitcomb J, Gazzard BG. Epidemiology and predictive factors for chemokine receptor use in HIV-1 infection. The Journal of Infectious Diseases. 191: 866-72. PMID 15717260 DOI: 10.1086/428096  0.111
2010 Funderburg N, Kalinowska M, Eason J, Goodrich J, Heera J, Mayer H, Rajicic N, Valdez H, Lederman MM. Effects of maraviroc and efavirenz on markers of immune activation and inflammation and associations with CD4+ cell rises in HIV-infected patients. Plos One. 5: e13188. PMID 20949133 DOI: 10.1371/Journal.Pone.0013188  0.087
2010 Hardy WD, Gulick RM, Mayer H, Fätkenheuer G, Nelson M, Heera J, Rajicic N, Goodrich J. Two-year safety and virologic efficacy of maraviroc in treatment-experienced patients with CCR5-tropic HIV-1 infection: 96-week combined analysis of MOTIVATE 1 and 2. Journal of Acquired Immune Deficiency Syndromes. 55: 558-564. PMID 20703158 DOI: 10.1097/Qai.0B013E3181Ee3D82  0.08
1997 O'Sullivan MG, Anderson DK, Goodrich JA, Tulli H, Green SW, Young NS, Brown KE. Experimental infection of cynomolgus monkeys with simian parvovirus. Journal of Virology. 71: 4517-21. PMID 9151844 DOI: 10.1128/jvi.71.6.4517-4521.1997  0.07
2010 Cooper DA, Heera J, Goodrich J, Tawadrous M, Saag M, Dejesus E, Clumeck N, Walmsley S, Ting N, Coakley E, Reeves JD, Reyes-Teran G, Westby M, Van Der Ryst E, Ive P, et al. Maraviroc versus efavirenz, both in combination with zidovudine-lamivudine, for the treatment of antiretroviral-naive subjects with CCR5-tropic HIV-1 infection. The Journal of Infectious Diseases. 201: 803-13. PMID 20151839 DOI: 10.1086/650697  0.054
2017 Wisnewski AV, Kanyo J, Asher J, Goodrich JA, Barnett G, Patrylak L, Liu J, Redlich CA, Nassar AF. Reaction Products of Hexamethylene Diisocyanate Vapors with "Self" Molecules in the Airways of Rabbits Exposed Via Tracheostomy. Xenobiotica; the Fate of Foreign Compounds in Biological Systems. 1-31. PMID 28489470 DOI: 10.1080/00498254.2017.1329569  0.052
2018 Langerman J, Doukas SG, Hasegawa H, Goodrich J, Lerner M, Sasaki C. In search of a longitudinal animal model of evoked swallow function. Laryngoscope Investigative Otolaryngology. 3: 191-197. PMID 30062134 DOI: 10.1002/lio2.161  0.051
2016 Goodrich JA, Kim JH, Situ R, Taylor W, Westmoreland T, Du F, Parks S, Ling G, Hwang JY, Rapuano A, Bandak FA, de Lanerolle NC. Neuronal and glial changes in the brain resulting from explosive blast in an experimental model. Acta Neuropathologica Communications. 4: 124. PMID 27884214 DOI: 10.1186/S40478-016-0395-3  0.046
2021 Mikelonis AM, Hawley RJ, Goodrich JA. Emergency response to stormwater contamination: A framework for containment and treatment. Journal of Environmental Management. 280: 111838. PMID 33360257 DOI: 10.1016/j.jenvman.2020.111838  0.046
2001 O'Sullivan MG, Goodrich JA, Adams MR. Increased prostacyclin synthesis by atherosclerotic arteries from estrogen-treated monkeys. Life Sciences. 69: 395-401. PMID 11459430 DOI: 10.1016/S0024-3205(01)01131-6  0.044
2014 Yang YJ, Goodrich JA. Toward quantitative analysis of water-energy-urban-climate nexus for urban adaptation planning Current Opinion in Chemical Engineering. 5: 22-28. DOI: 10.1016/j.coche.2014.03.006  0.043
2011 Laties AM, Fraunfelder FT, Tomaszewski K, Goodrich J, Moreira AT, Sato MT, de Queiroz-Telles F. Long-term visual safety of voriconazole in adult patients with paracoccidioidomycosis. Clinical Therapeutics. 32: 2207-17. PMID 21316537 DOI: 10.1016/S0149-2918(10)80024-4  0.041
2016 Henry TD, Schaer GL, DeMaria A, Recker D, Remmers AE, Goodrich J, Patel A. The iXCELL-DCM Trial: Rationale and Design. Cell Transplantation. PMID 27009022 DOI: 10.3727/096368916X691295  0.041
2010 Asmuth DM, Goodrich J, Cooper DA, Haubrich R, Rajicic N, Hirschel B, Mayer H, Valdez H. CD4+ T-cell restoration after 48 weeks in the maraviroc treatment-experienced trials MOTIVATE 1 and 2 Journal of Acquired Immune Deficiency Syndromes. 54: 394-397. PMID 20009949 DOI: 10.1097/QAI.0b013e3181c5c83b  0.041
2010 Ayoub A, Alston S, Goodrich J, Heera J, Hoepelman AI, Lalezari J, Mchale M, Nelson M, van der Ryst E, Mayer H. Hepatic safety and tolerability in the maraviroc clinical development program. Aids (London, England). 24: 2743-50. PMID 20935557 DOI: 10.1097/Qad.0B013E32833F9Ce2  0.041
1986 Clark RM, Goodrich JA, Deininger RA. Drinking water and cancer mortality. The Science of the Total Environment. 53: 153-72. PMID 3764408 DOI: 10.1016/0048-9697(86)90129-4  0.04
2022 Buse HY, Hall JS, Hunter GL, Goodrich JA. Differences in UV-C LED Inactivation of Serogroups in Drinking Water. Microorganisms. 10. PMID 35208810 DOI: 10.3390/microorganisms10020352  0.038
2008 Perovich G, Dortch Q, Goodrich J, Berger PS, Brooks J, Evens TJ, Gobler CJ, Graham J, Hyde J, Karner D, O'Shea D, Paul V, Paerl H, Piehler M, Rosen BH, et al. Causes, Prevention, and Mitigation Workgroup report. Advances in Experimental Medicine and Biology. 619: 185-215. PMID 18461770 DOI: 10.1007/978-0-387-75865-7_9  0.037
2010 Chang NB, Yang YJ, Goodrich JA, Daranpob A. Development of the Metropolitan Water Availability Index (MWAI) and short-term assessment with multi-scale remote sensing technologies. Journal of Environmental Management. 91: 1397-413. PMID 20227167 DOI: 10.1016/J.Jenvman.2010.02.024  0.037
2009 Saag M, Goodrich J, Fätkenheuer G, Clotet B, Clumeck N, Sullivan J, Westby M, van der Ryst E, Mayer H. A double-blind, placebo-controlled trial of maraviroc in treatment-experienced patients infected with non-R5 HIV-1. The Journal of Infectious Diseases. 199: 1638-47. PMID 19432546 DOI: 10.1086/598965  0.036
2024 Kost RG, Cheng A, Andrews J, Chatterjee R, Dozier A, Ford D, Schlesinger N, Dykes C, Kelly-Pumarol I, Kennedy N, Lewis-Land C, Lindo S, Martinez L, Musty M, Roberts J, ... ... Goodrich J, et al. Empowering the Participant Voice (EPV): Design and implementation of collaborative infrastructure to collect research participant experience feedback at scale. Journal of Clinical and Translational Science. 8: e40. PMID 38476242 DOI: 10.1017/cts.2024.19  0.035
2017 Hawley RJ, Goodrich JA, Korth NL, Rust CJ, Fet EV, Frye C, MacMannis KR, Wooten MS, Jacobs M, Sinha R. DETENTION OUTLET RETROFIT IMPROVES THE FUNCTIONALITY OF EXISTING DETENTION BASINS BY REDUCING EROSIVE FLOWS IN RECEIVING CHANNELS. Journal of the American Water Resources Association. 53: 1032-1047. PMID 30294203 DOI: 10.1111/1752-1688.12548  0.034
2013 Swenson LC, Chui CK, Brumme CJ, Chan D, Woods CK, Mo T, Dong W, Chapman D, Lewis M, Demarest JF, James I, Portsmouth S, Goodrich J, Heera J, Valdez H, et al. Genotypic analysis of the V3 region of HIV from virologic nonresponders to maraviroc-containing regimens reveals distinct patterns of failure. Antimicrobial Agents and Chemotherapy. 57: 6122-30. PMID 24080655 DOI: 10.1128/AAC.01534-13  0.033
2008 Gidwani P, Levy A, Goodrich J, Weidenheim K, Kolb EA. Successful outcome with tandem myeloablative chemotherapy and autologous peripheral blood stem cell transplants in a patient with atypical teratoid/rhabdoid tumor of the central nervous system. Journal of Neuro-Oncology. 88: 211-5. PMID 18317689 DOI: 10.1007/s11060-008-9553-1  0.033
1995 Goodrich JA, Ward GS, Swindle MM. Normal serum biochemical and hematological values of the Sulawesi macaques. Journal of Medical Primatology. 24: 17-28. PMID 7563007 DOI: 10.1111/j.1600-0684.1995.tb00140.x  0.032
2009 Yang YJ, Goodrich JA. Timing and prediction of climate change and hydrological impacts: Periodicity in natural variations Environmental Geology. 57: 1065-1078. DOI: 10.1007/s00254-008-1392-z  0.032
2019 Kobets A, Ammar A, Dowling K, Cohen A, Goodrich J. The limits of endoscopic endonasal approaches in young children: a review. Child's Nervous System : Chns : Official Journal of the International Society For Pediatric Neurosurgery. PMID 31845030 DOI: 10.1007/s00381-019-04455-y  0.032
2016 Patel AN, Henry TD, Quyyumi AA, Schaer GL, Anderson RD, Toma C, East C, Remmers AE, Goodrich J, Desai AS, Recker D, DeMaria A. Ixmyelocel-T for patients with ischaemic heart failure: a prospective randomised double-blind trial. Lancet (London, England). PMID 27059887 DOI: 10.1016/S0140-6736(16)30137-4  0.031
2019 Walsh JJ, Huang Y, Simmons JW, Goodrich JA, McHugh B, Rothman DL, Elefteriades JA, Hyder F, Coman D. Dynamic Thermal Mapping of Localized Therapeutic Hypothermia in the Brain. Journal of Neurotrauma. PMID 31311414 DOI: 10.1089/Neu.2019.6485  0.031
2018 Burkhardt JB, Goodrich JA, Szabo J, Hall J, Crosby J, Tourney S, Clement R. Understanding the Impact of Mesh on Tank Overflow System Capacity. Journal - American Water Works Association. 110: E44-E51. PMID 30713343 DOI: 10.1002/awwa.1162  0.029
2016 Levine AD, Yang YJ, Goodrich JA. Enhancing climate adaptation capacity for drinking water treatment facilities Journal of Water and Climate Change. 7: 485-497. DOI: 10.2166/wcc.2016.011  0.027
2010 Davis J, Hackman F, Ndongo MN, Choo H, Lewis D, Tawadrous M, Goodrich J, Langdon G. Safety and tolerability of lersivirine, a nonnucleoside reverse transcriptase inhibitor, during a 28-day, randomized, placebo-controlled, Phase I clinical study in healthy male volunteers. Clinical Therapeutics. 32: 1889-95. PMID 21095483 DOI: 10.1016/j.clinthera.2010.10.007  0.025
2014 Gulick RM, Fatkenheuer G, Burnside R, Hardy WD, Nelson MR, Goodrich J, Mukwaya G, Portsmouth S, Heera JR. Five-year safety evaluation of maraviroc in HIV-1-infected treatment-experienced patients. Journal of Acquired Immune Deficiency Syndromes (1999). 65: 78-81. PMID 24419064 DOI: 10.1097/QAI.0b013e3182a7a97a  0.024
1985 Sherman LR, Goodrich JA. The historical development of sodium dodecyl sulphate-polyacrylamide gel electrophoresis Chemical Society Reviews. 14: 225. DOI: 10.1039/CS9851400225  0.024
2020 Kim JH, Goodrich JA, Situ R, Rapuano A, Hetherington H, Du F, Parks S, Taylor W, Westmoreland T, Ling G, Bandak FA, de Lanerolle NC. Periventricular White Matter Alterations From Explosive Blast in a Large Animal Model: Mild Traumatic Brain Injury or "Subconcussive" Injury? Journal of Neuropathology and Experimental Neurology. PMID 32386412 DOI: 10.1093/Jnen/Nlaa026  0.024
1993 Keith JC, Goodrich JA, Endo Y, Taub D, Mehlman P, Ward G. Effects of ridogrel on the prostacyclin-thromboxane ratio in nulliparous third trimester-pregnant rhesus monkeys. Prostaglandins. 45: 547-55. PMID 8337414 DOI: 10.1016/0090-6980(93)90018-3  0.024
2005 Brumme ZL, Goodrich J, Mayer HB, Brumme CJ, Henrick BM, Wynhoven B, Asselin JJ, Cheung PK, Hogg RS, Montaner JSG, Harrigan PR. Molecular and clinical epidemiology of CXCR4-using HIV-1 in a large population of antiretroviral-naive individuals Journal of Infectious Diseases. 192: 466-474. PMID 15995960 DOI: 10.1086/431519  0.021
2010 Sierra-Madero J, Di Perri G, Wood R, Saag M, Frank I, Craig C, Burnside R, McCracken J, Pontani D, Goodrich J, Heera J, Mayer H. Efficacy and safety of maraviroc versus efavirenz, both with zidovudine/lamivudine: 96-week results from the MERIT study. Hiv Clinical Trials. 11: 125-32. PMID 20736149 DOI: 10.1310/hct1103-125  0.021
1989 Clark RM, Goodrich JA. Developing a Data Base on Infrastructure Needs Journal - American Water Works Association. 81: 81-87. DOI: 10.1002/j.1551-8833.1989.tb03242.x  0.02
2008 Jeffrey Yang Y, Goodrich JA, Clark RM, Li SY. Modeling and testing of reactive contaminant transport in drinking water pipes: chlorine response and implications for online contaminant detection. Water Research. 42: 1397-412. PMID 17991507 DOI: 10.1016/j.watres.2007.10.009  0.02
2008 Gulick RM, Lalezari J, Goodrich J, Clumeck N, DeJesus E, Horban A, Nadler J, Clotet B, Karlsson A, Wohlfeiler M, Montana JB, McHale M, Sullivan J, Ridgway C, Felstead S, et al. Maraviroc for previously treated patients with R5 HIV-1 infection. The New England Journal of Medicine. 359: 1429-41. PMID 18832244 DOI: 10.1056/NEJMoa0803152  0.02
2013 Vernazza P, Wang C, Pozniak A, Weil E, Pulik P, Cooper DA, Kaplan R, Lazzarin A, Valdez H, Goodrich J, Mori J, Craig C, Tawadrous M. Efficacy and safety of lersivirine (UK-453,061) versus efavirenz in antiretroviral treatment-naive HIV-1-infected patients: Week 48 primary analysis results from an ongoing, multicenter, randomized, double-blind, phase IIb trial Journal of Acquired Immune Deficiency Syndromes. 62: 171-179. PMID 23328090 DOI: 10.1097/QAI.0b013e31827a2ba2  0.018
1995 Goodrich JA, Hottendorf GH. Tobramycin gender-related nephrotoxicity in Fischer but not Sprague-Dawley rats. Toxicology Letters. 75: 127-31. PMID 7863519 DOI: 10.1016/0378-4274(94)03170-C  0.018
2009 Jeffrey Yang Y, Haught RC, Goodrich JA. Real-time contaminant detection and classification in a drinking water pipe using conventional water quality sensors: techniques and experimental results. Journal of Environmental Management. 90: 2494-506. PMID 19269081 DOI: 10.1016/j.jenvman.2009.01.021  0.014
1996 Clark R, Geldreich E, Fox K, Rice E, Johnson C, Goodrich J, Barnick J, Abdesaken F, Hill J, Angulo F. A waterborneSalmonella typhimuriumoutbreak in Gideon, Missouri: Results from a field investigation International Journal of Environmental Health Research. 6: 187-193. DOI: 10.1080/09603129609356889  0.013
2006 Girshin M, Broderick C, Patel D, Chacko S, Reddy S, Staffenberg D, Goodrich J, Wasnick J. Anesthetic management of staged separation of craniopagus conjoined twins. Paediatric Anaesthesia. 16: 347-51. PMID 16490105 DOI: 10.1111/j.1460-9592.2005.01712.x  0.013
2003 Kanchanapoom T, Koirala J, Goodrich J, Agamah E, Khardori N. Treatment of central nervous system infection by vancomycin-resistant enterococcus faecium. Diagnostic Microbiology and Infectious Disease. 45: 213-5. PMID 12663164 DOI: 10.1016/s0732-8893(02)00523-0  0.013
2009 Moyle G, Rajicic N, Goodrich J, Mayer H, Valdez H. Concurrent use of statins does not influence efficacy of maraviroc in Maraviroc versus Optimized Therapy in Viremic Antiretroviral Treatment-Experienced Patients 1 and 2 trials. Aids (London, England). 23: 1613. PMID 19622911 DOI: 10.1097/QAD.0b013e32832dbfa7  0.01
2003 Greenberg RN, Feinberg J, Goodrich J, Pilson RS, Siemon-Hryczyk P. Long-term efficacy and safety of twice-daily saquinavir soft gelatin capsules (SGC), with or without nelfinavir, and three times daily saquinavir-SGC, in triple combination therapy for HIV infection: 100-week follow-up. Antiviral Therapy. 8: 37-42. PMID 12713062  0.01
2003 Goodrich JA, Clarkson TB, Cline JM, Jenkins AJ, Del Signore MJ. Value of the micropig model of menopause in the assessment of benefits and risks of postmenopausal therapies for cardiovascular and reproductive tissues. Fertility and Sterility. 79: 779-88. PMID 12620491 DOI: 10.1016/S0015-0282(02)04826-4  0.01
1997 Stovall DO, Goodrich JA, Lundy D, Standard SC, Joe C, Preston CD. Sacral fixation technique in lumbosacral fusion. Spine. 22: 32-7. PMID 9122779 DOI: 10.1097/00007632-199701010-00006  0.01
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