Themis Lazaridis - Publications

Affiliations: 
City University of New York, New York, NY, United States 
Area:
Physical Chemistry, Biochemistry

48 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Sepehri A, Nepal B, Lazaridis T. Lipid interactions of an actinoporin pore-forming oligomer. Biophysical Journal. PMID 33617834 DOI: 10.1016/j.bpj.2021.02.015  0.72
2020 Rodnin MV, Vasquez-Montes V, Nepal B, Ladokhin AS, Lazaridis T. Correction to: Experimental and Computational Characterization of Oxidized and Reduced Protegrin Pores in Lipid Bilayers. The Journal of Membrane Biology. PMID 32601712 DOI: 10.1007/s00232-020-00128-z  0.72
2020 Rodnin MV, Vasquez-Montes V, Nepal B, Ladokhin AS, Lazaridis T. Experimental and Computational Characterization of Oxidized and Reduced Protegrin Pores in Lipid Bilayers. The Journal of Membrane Biology. 253: 287-298. PMID 32500172 DOI: 10.1007/s00232-020-00124-3  0.72
2020 Sepehri A, PeBenito L, Pino-Angeles A, Lazaridis T. What Makes a Good Pore Former: A Study of Synthetic Melittin Derivatives. Biophysical Journal. PMID 32183940 DOI: 10.1016/j.bpj.2020.02.024  0.52
2020 Nepal B, Sepehri A, Lazaridis T. Mechanisms of negative membrane curvature sensing and generation by ESCRT III subunit Snf7. Protein Science : a Publication of the Protein Society. PMID 32142182 DOI: 10.1002/pro.3851  0.72
2018 Nepal B, Leveritt J, Lazaridis T. Membrane Curvature Sensing by Amphipathic Helices: Insights from Implicit Membrane Modeling. Biophysical Journal. 114: 2128-2141. PMID 29742406 DOI: 10.1016/j.bpj.2018.03.030  0.72
2016 Pino-Angeles A, Leveritt JM, Lazaridis T. Pore Structure and Synergy in Antimicrobial Peptides of the Magainin Family. Plos Computational Biology. 12: e1004570. PMID 26727376 DOI: 10.1371/journal.pcbi.1004570  1
2015 Leveritt JM, Pino-Angeles A, Lazaridis T. The structure of a melittin-stabilized pore. Biophysical Journal. 108: 2424-6. PMID 25992720 DOI: 10.1016/j.bpj.2015.04.006  1
2014 Rahaman A, Lazaridis T. A thermodynamic approach to alamethicin pore formation. Biochimica Et Biophysica Acta. 1838: 1439-47. PMID 24754058 DOI: 10.1016/J.BBAMEM.2014.01.011  1
2014 Brice AR, Lazaridis T. Structure and dynamics of a fusion peptide helical hairpin on the membrane surface: comparison of molecular simulations and NMR. The Journal of Physical Chemistry. B. 118: 4461-70. PMID 24712538 DOI: 10.1021/jp409412g  1
2014 Lazaridis T, Leveritt JM, PeBenito L. Implicit membrane treatment of buried charged groups: application to peptide translocation across lipid bilayers. Biochimica Et Biophysica Acta. 1838: 2149-59. PMID 24525075 DOI: 10.1016/j.bbamem.2014.01.015  1
2014 Prieto L, He Y, Lazaridis T. Protein arcs may form stable pores in lipid membranes. Biophysical Journal. 106: 154-61. PMID 24411247 DOI: 10.1016/j.bpj.2013.11.4490  1
2014 Rahaman A, Lazaridis T. A thermodynamic approach to alamethicin pore formation. Biochimica Et Biophysica Acta. 1838: 98-105. PMID 24071593 DOI: 10.1016/j.bbamem.2013.09.012  1
2013 He Y, Lazaridis T. Activity determinants of helical antimicrobial peptides: a large-scale computational study. Plos One. 8: e66440. PMID 23776672 DOI: 10.1371/journal.pone.0066440  0.44
2013 He Y, Prieto L, Lazaridis T. Modeling peptide binding to anionic membrane pores. Journal of Computational Chemistry. 34: 1463-75. PMID 23580260 DOI: 10.1002/jcc.23282  1
2013 Zhan H, Lazaridis T. Inclusion of lateral pressure/curvature stress effects in implicit membrane models. Biophysical Journal. 104: 643-54. PMID 23442915 DOI: 10.1016/j.bpj.2012.12.022  1
2013 Lazaridis T, He Y, Prieto L. Membrane interactions and pore formation by the antimicrobial peptide protegrin. Biophysical Journal. 104: 633-42. PMID 23442914 DOI: 10.1016/j.bpj.2012.12.038  1
2012 Li Z, Lazaridis T. Computing the thermodynamic contributions of interfacial water. Methods in Molecular Biology (Clifton, N.J.). 819: 393-404. PMID 22183549 DOI: 10.1007/978-1-61779-465-0_24  0.76
2012 Zhan H, Lazaridis T. Influence of the membrane dipole potential on peptide binding to lipid bilayers. Biophysical Chemistry. 161: 1-7. PMID 22100997 DOI: 10.1016/j.bpc.2011.10.002  1
2011 Madeo J, Mihajlovic M, Lazaridis T, Gunner MR. Slow dissociation of a charged ligand: analysis of the primary quinone Q(A) site of photosynthetic bacterial reaction centers. Journal of the American Chemical Society. 133: 17375-85. PMID 21863833 DOI: 10.1021/ja205811f  1
2011 Ramos J, Lazaridis T. Computational analysis of residue contributions to coiled-coil topology. Protein Science : a Publication of the Protein Society. 20: 1845-55. PMID 21858887 DOI: 10.1002/pro.718  1
2011 Prieto L, Lazaridis T. Computational studies of colicin insertion into membranes: the closed state. Proteins. 79: 126-41. PMID 20941706 DOI: 10.1002/prot.22866  1
2009 Zhang J, Lazaridis T. Transmembrane helix association affinity can be modulated by flanking and noninterfacial residues. Biophysical Journal. 96: 4418-27. PMID 19486666 DOI: 10.1016/j.bpj.2009.03.008  0.96
2009 Brooks BR, Brooks CL, Mackerell AD, Nilsson L, Petrella RJ, Roux B, Won Y, Archontis G, Bartels C, Boresch S, Caflisch A, Caves L, Cui Q, Dinner AR, Feig M, ... ... Lazaridis T, et al. CHARMM: the biomolecular simulation program. Journal of Computational Chemistry. 30: 1545-614. PMID 19444816 DOI: 10.1002/jcc.21287  1
2007 Li Z, Lazaridis T. Water at biomolecular binding interfaces. Physical Chemistry Chemical Physics : Pccp. 9: 573-81. PMID 17242738 DOI: 10.1039/b612449f  0.76
2006 Ramos J, Lazaridis T. Energetic determinants of oligomeric state specificity in coiled coils. Journal of the American Chemical Society. 128: 15499-510. PMID 17132017 DOI: 10.1021/ja0655284  1
2006 Zhang J, Lazaridis T. Calculating the free energy of association of transmembrane helices. Biophysical Journal. 91: 1710-23. PMID 16766613 DOI: 10.1529/biophysj.106.081224  0.96
2006 Mottamal M, Lazaridis T. Voltage-dependent energetics of alamethicin monomers in the membrane. Biophysical Chemistry. 122: 50-7. PMID 16542770 DOI: 10.1016/j.bpc.2006.02.005  0.72
2006 Li Z, Lazaridis T. Thermodynamics of buried water clusters at a protein-ligand binding interface. The Journal of Physical Chemistry. B. 110: 1464-75. PMID 16471698 DOI: 10.1021/jp056020a  0.76
2006 Mottamal M, Zhang J, Lazaridis T. Energetics of the native and non-native states of the glycophorin transmembrane helix dimer. Proteins. 62: 996-1009. PMID 16395713 DOI: 10.1002/prot.20844  0.96
2005 Lazaridis T, Mallik B, Chen Y. Implicit solvent simulations of DPC micelle formation. The Journal of Physical Chemistry. B. 109: 15098-106. PMID 16852911 DOI: 10.1021/jp0516801  0.4
2005 Li Z, Lazaridis T. The effect of water displacement on binding thermodynamics: concanavalin A. The Journal of Physical Chemistry. B. 109: 662-70. PMID 16851059 DOI: 10.1021/jp0477912  0.76
2005 Mottamal M, Lazaridis T. The contribution of C alpha-H...O hydrogen bonds to membrane protein stability depends on the position of the amide. Biochemistry. 44: 1607-13. PMID 15683244 DOI: 10.1021/bi048065s  0.72
2003 Li Z, Lazaridis T. Thermodynamic contributions of the ordered water molecule in HIV-1 protease. Journal of the American Chemical Society. 125: 6636-7. PMID 12769565 DOI: 10.1021/ja0299203  0.76
2003 Lazaridis T, Karplus M. Thermodynamics of protein folding: a microscopic view. Biophysical Chemistry. 100: 367-95. PMID 12646378 DOI: 10.1016/S0301-4622(02)00293-4  1
2002 Mallik B, Masunov A, Lazaridis T. Distance and exposure dependent effective dielectric function. Journal of Computational Chemistry. 23: 1090-9. PMID 12116395 DOI: 10.1002/jcc.10104  0.4
2000 Inuzuka Y, Lazaridis T. On the unfolding of alpha-lytic protease and the role of the pro region. Proteins. 41: 21-32. PMID 10944390 DOI: 10.1002/1097-0134(20001001)41:1<21::AID-PROT50>3.0.CO;2-V  1
2000 Lazaridis T, Karplus M. Effective energy functions for protein structure prediction. Current Opinion in Structural Biology. 10: 139-45. PMID 10753811 DOI: 10.1016/S0959-440X(00)00063-4  1
1999 Lazaridis T, Karplus M. Heat capacity and compactness of denatured proteins. Biophysical Chemistry. 78: 207-17. PMID 17030309 DOI: 10.1016/S0301-4622(99)00022-8  1
1999 Dinner AR, Lazaridis T, Karplus M. Understanding beta-hairpin formation. Proceedings of the National Academy of Sciences of the United States of America. 96: 9068-73. PMID 10430896 DOI: 10.1073/pnas.96.16.9068  1
1999 Lazaridis T, Karplus M. Discrimination of the native from misfolded protein models with an energy function including implicit solvation. Journal of Molecular Biology. 288: 477-87. PMID 10329155 DOI: 10.1006/jmbi.1999.2685  1
1999 Lazaridis T, Karplus M. Effective energy function for proteins in solution. Proteins. 35: 133-52. PMID 10223287 DOI: 10.1002/(SICI)1097-0134(19990501)35:2<133::AID-PROT1>3.0.CO;2-N  1
1998 Petrella RJ, Lazaridis T, Karplus M. Protein sidechain conformer prediction: a test of the energy function. Folding & Design. 3: 353-77. PMID 9806937 DOI: 10.1016/S1359-0278(98)00050-9  1
1998 Lazaridis T, Lee I, Karplus M. Dynamics and unfolding pathways of a hyperthermophilic and a mesophilic rubredoxin. Protein Science : a Publication of the Protein Society. 6: 2589-605. PMID 9416608 DOI: 10.1002/pro.5560061211  1
1997 Lazaridis T, Karplus M. "New view" of protein folding reconciled with the old through multiple unfolding simulations. Science (New York, N.Y.). 278: 1928-31. PMID 9395391 DOI: 10.1126/science.278.5345.1928  1
1996 Lazaridis T, Archontis G, Karplus M. Enthalpic contribution to protein stability: insights from atom-based calculations and statistical mechanics. Advances in Protein Chemistry. 47: 231-306. PMID 8561050 DOI: 10.1016/S0065-3233(08)60547-1  1
1996 Lazaridis T, Karplus M. Orientational correlations and entropy in liquid water The Journal of Chemical Physics. 105: 4294-4316. DOI: 10.1063/1.472247  1
1992 Lazaridis T, Paulaitis ME. Entropy of hydrophobic hydration: A new statistical mechanical formulation Journal of Physical Chemistry. 96: 3847-3855. DOI: 10.1016/0378-3812(93)87005-L  1
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