Clyde L. Denis - Publications

Affiliations: 
University of New Hampshire, Durham, NH, United States 
Area:
Molecular Biology, Biochemistry

30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Denis CL, Laue TM, Wang X. Identification of a 57S translation complex containing closed-loop factors and the 60S ribosome subunit. Scientific Reports. 8: 11468. PMID 30065356 DOI: 10.1038/s41598-018-29832-6  0.56
2017 Denis CL, Richardson R, Park S, Zhang C, Xi W, Laue TM, Wang X. Defining the protein complexome of translation termination factor eRF1: Identification of four novel eRF1-containing complexes that range from 20S to 57S in size. Proteins. PMID 29139201 DOI: 10.1002/prot.25422  0.72
2016 Xi W, Wang X, Laue TM, Denis CL. Multiple discrete soluble aggregates influence polyglutamine toxicity in a Huntington's disease model system. Scientific Reports. 6: 34916. PMID 27721444 DOI: 10.1038/srep34916  0.56
2016 Wang X, Xi W, Toomey S, Chiang YC, Hasek J, Laue TM, Denis CL. Stoichiometry and Change of the mRNA Closed-Loop Factors as Translating Ribosomes Transit from Initiation to Elongation. Plos One. 11: e0150616. PMID 26953568 DOI: 10.1371/journal.pone.0150616  1
2014 Zhang C, Wang X, Park S, Chiang YC, Xi W, Laue TM, Denis CL. Only a subset of the PAB1-mRNP proteome is present in mRNA translation complexes. Protein Science : a Publication of the Protein Society. 23: 1036-49. PMID 24838188 DOI: 10.1002/pro.2490  0.92
2013 Zhang C, Lee DJ, Chiang YC, Richardson R, Park S, Wang X, Laue TM, Denis CL. The RRM1 domain of the poly(A)-binding protein from Saccharomyces cerevisiae is critical to control of mRNA deadenylation. Molecular Genetics and Genomics : Mgg. 288: 401-12. PMID 23793387 DOI: 10.1007/s00438-013-0759-3  0.92
2012 Richardson R, Denis CL, Zhang C, Nielsen ME, Chiang YC, Kierkegaard M, Wang X, Lee DJ, Andersen JS, Yao G. Mass spectrometric identification of proteins that interact through specific domains of the poly(A) binding protein. Molecular Genetics and Genomics : Mgg. 287: 711-30. PMID 22836166 DOI: 10.1007/s00438-012-0709-5  0.92
2012 Wang X, Zhang C, Chiang YC, Toomey S, Power MP, Granoff ME, Richardson R, Xi W, Lee DJ, Chase S, Laue TM, Denis CL. Use of the novel technique of analytical ultracentrifugation with fluorescence detection system identifies a 77S monosomal translation complex. Protein Science : a Publication of the Protein Society. 21: 1253-68. PMID 22733647 DOI: 10.1002/pro.2110  1
2010 Lee D, Ohn T, Chiang YC, Quigley G, Yao G, Liu Y, Denis CL. PUF3 acceleration of deadenylation in vivo can operate independently of CCR4 activity, possibly involving effects on the PAB1-mRNP structure. Journal of Molecular Biology. 399: 562-75. PMID 20435044 DOI: 10.1016/j.jmb.2010.04.034  1
2009 Govindan M, Meng X, Denis CL, Webb P, Baxter JD, Walfish PG. Identification of CCR4 and other essential thyroid hormone receptor co-activators by modified yeast synthetic genetic array analysis. Proceedings of the National Academy of Sciences of the United States of America. 106: 19854-9. PMID 19903885 DOI: 10.1073/pnas.0910134106  1
2008 Cui Y, Ramnarain DB, Chiang YC, Ding LH, McMahon JS, Denis CL. Genome wide expression analysis of the CCR4-NOT complex indicates that it consists of three modules with the NOT module controlling SAGA-responsive genes. Molecular Genetics and Genomics : Mgg. 279: 323-37. PMID 18214544 DOI: 10.1007/s00438-007-0314-1  0.96
2007 Yao G, Chiang YC, Zhang C, Lee DJ, Laue TM, Denis CL. PAB1 self-association precludes its binding to poly(A), thereby accelerating CCR4 deadenylation in vivo. Molecular and Cellular Biology. 27: 6243-53. PMID 17620415 DOI: 10.1128/MCB.00734-07  0.92
2007 Ohn T, Chiang YC, Lee DJ, Yao G, Zhang C, Denis CL. CAF1 plays an important role in mRNA deadenylation separate from its contact to CCR4. Nucleic Acids Research. 35: 3002-15. PMID 17439972 DOI: 10.1093/nar/gkm196  1
2004 Viswanathan P, Ohn T, Chiang YC, Chen J, Denis CL. Mouse CAF1 can function as a processive deadenylase/3'-5'-exonuclease in vitro but in yeast the deadenylase function of CAF1 is not required for mRNA poly(A) removal. The Journal of Biological Chemistry. 279: 23988-95. PMID 15044470 DOI: 10.1074/jbc.M402803200  1
2004 Clark LB, Viswanathan P, Quigley G, Chiang YC, McMahon JS, Yao G, Chen J, Nelsbach A, Denis CL. Systematic mutagenesis of the leucine-rich repeat (LRR) domain of CCR4 reveals specific sites for binding to CAF1 and a separate critical role for the LRR in CCR4 deadenylase activity. The Journal of Biological Chemistry. 279: 13616-23. PMID 14734555 DOI: 10.1074/jbc.M313202200  1
2003 Cui Y, Denis CL. In vivo evidence that defects in the transcriptional elongation factors RPB2, TFIIS, and SPT5 enhance upstream poly(A) site utilization. Molecular and Cellular Biology. 23: 7887-901. PMID 14560031 DOI: 10.1128/MCB.23.21.7887-7901.2003  1
2003 Denis CL, Chen J. The CCR4-NOT complex plays diverse roles in mRNA metabolism. Progress in Nucleic Acid Research and Molecular Biology. 73: 221-50. PMID 12882519  1
2003 Viswanathan P, Chen J, Chiang YC, Denis CL. Identification of multiple RNA features that influence CCR4 deadenylation activity. The Journal of Biological Chemistry. 278: 14949-55. PMID 12590136 DOI: 10.1074/jbc.M211794200  1
2002 Russell P, Benson JD, Denis CL. Characterization of mutations in NOT2 indicates that it plays an important role in maintaining the integrity of the CCR4-NOT complex. Journal of Molecular Biology. 322: 27-39. PMID 12215412  0.4
2002 Chen J, Chiang YC, Denis CL. CCR4, a 3'-5' poly(A) RNA and ssDNA exonuclease, is the catalytic component of the cytoplasmic deadenylase. The Embo Journal. 21: 1414-26. PMID 11889047 DOI: 10.1093/emboj/21.6.1414  1
2001 Chen J, Rappsilber J, Chiang YC, Russell P, Mann M, Denis CL. Purification and characterization of the 1.0 MDa CCR4-NOT complex identifies two novel components of the complex. Journal of Molecular Biology. 314: 683-94. PMID 11733989 DOI: 10.1006/jmbi.2001.5162  1
2001 Denis CL, Chiang YC, Cui Y, Chen J. Genetic evidence supports a role for the yeast CCR4-NOT complex in transcriptional elongation. Genetics. 158: 627-34. PMID 11404327  1
2001 Tucker M, Valencia-Sanchez MA, Staples RR, Chen J, Denis CL, Parker R. The transcription factor associated Ccr4 and Caf1 proteins are components of the major cytoplasmic mRNA deadenylase in Saccharomyces cerevisiae. Cell. 104: 377-86. PMID 11239395  1
2001 Liu HY, Chiang YC, Pan J, Chen J, Salvadore C, Audino DC, Badarinarayana V, Palaniswamy V, Anderson B, Denis CL. Characterization of CAF4 and CAF16 reveals a functional connection between the CCR4-NOT complex and a subset of SRB proteins of the RNA polymerase II holoenzyme. The Journal of Biological Chemistry. 276: 7541-8. PMID 11113136 DOI: 10.1074/jbc.M009112200  1
1999 Bai Y, Salvadore C, Chiang YC, Collart MA, Liu HY, Denis CL. The CCR4 and CAF1 proteins of the CCR4-NOT complex are physically and functionally separated from NOT2, NOT4, and NOT5. Molecular and Cellular Biology. 19: 6642-51. PMID 10490603  0.92
1998 Komarnitsky SI, Chiang YC, Luca FC, Chen J, Toyn JH, Winey M, Johnston LH, Denis CL. DBF2 protein kinase binds to and acts through the cell cycle-regulated MOB1 protein. Molecular and Cellular Biology. 18: 2100-7. PMID 9528782  1
1998 Hata H, Mitsui H, Liu H, Bai Y, Denis CL, Shimizu Y, Sakai A. Dhh1p, a putative RNA helicase, associates with the general transcription factors Pop2p and Ccr4p from Saccharomyces cerevisiae. Genetics. 148: 571-9. PMID 9504907  0.44
1983 Denis CL, Young ET. Isolation and characterization of the positive regulatory gene ADR1 from Saccharomyces cerevisiae Molecular and Cellular Biology. 3: 360-370. PMID 6341814  1
1983 Denis CL, Ferguson J, Young ET. mRNA levels for the fermentative alcohol dehydrogenase of Saccharomyces cerevisiae decrease Journal of Biological Chemistry. 258: 1165-1171. PMID 6337132  1
1981 Denis CL, Ciriacy M, Young ET. A positive regulatory gene is required for accumulation of the functional messenger RNA for the glucose-repressible alcohol dehydrogenase from Saccharomyces cerevisiae Journal of Molecular Biology. 148: 355-368. PMID 7031263 DOI: 10.1016/0022-2836(81)90181-9  1
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