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Salim Bougouffa - Publications

Affiliations: 
Faculty of Life Sciences The University of Manchester, Manchester, England, United Kingdom 
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Eida AA, Bougouffa S, Alam I, Hirt H, Saad MM. Complete Genome Sequence of Cellulomonas sp. JZ18, a Root Endophytic Bacterium Isolated from the Perennial Desert Tussock-Grass Panicum turgidum. Current Microbiology. PMID 33683416 DOI: 10.1007/s00284-021-02429-5  0.325
2021 Lan Y, Sun J, Chen C, Sun Y, Zhou Y, Yang Y, Zhang W, Li R, Zhou K, Wong WC, Kwan YH, Cheng A, Bougouffa S, Van Dover CL, Qiu JW, et al. Hologenome analysis reveals dual symbiosis in the deep-sea hydrothermal vent snail Gigantopelta aegis. Nature Communications. 12: 1165. PMID 33608555 DOI: 10.1038/s41467-021-21450-7  0.334
2020 Eida AA, Bougouffa S, L'Haridon F, Alam I, Weisskopf L, Bajic VB, Saad MM, Hirt H. Genome Insights of the Plant-Growth Promoting Bacterium JZ38 With Volatile-Mediated Antagonistic Activity Against . Frontiers in Microbiology. 11: 369. PMID 32218777 DOI: 10.3389/Fmicb.2020.00369  0.348
2020 Eida AA, Bougouffa S, Alam I, Saad MM, Hirt H. Complete genome sequence of the endophytic bacterium Cellulosimicrobium sp. JZ28 isolated from the root endosphere of the perennial desert tussock grass Panicum turgidum. Archives of Microbiology. PMID 32172289 DOI: 10.1007/S00203-020-01859-2  0.415
2020 Eida AA, Bougouffa S, Alam I, Hirt H, Saad MM. Complete Genome Sequence of Paenibacillus sp. JZ16, a Plant Growth Promoting Root Endophytic Bacterium of the Desert Halophyte Zygophyllum Simplex. Current Microbiology. PMID 32016548 DOI: 10.1007/S00284-020-01908-5  0.4
2019 Othoum G, Prigent S, Derouiche A, Shi L, Bokhari A, Alamoudi S, Bougouffa S, Gao X, Hoehndorf R, Arold ST, Gojobori T, Hirt H, Lafi FF, Nielsen J, Bajic VB, et al. Comparative genomics study reveals Red Sea Bacillus with characteristics associated with potential microbial cell factories (MCFs). Scientific Reports. 9: 19254. PMID 31848398 DOI: 10.1038/S41598-019-55726-2  0.443
2019 Othoum G, Bougouffa S, Bokhari A, Lafi FF, Gojobori T, Hirt H, Mijakovic I, Bajic VB, Essack M. Mining biosynthetic gene clusters in Virgibacillus genomes. Bmc Genomics. 20: 696. PMID 31481022 DOI: 10.1186/S12864-019-6065-7  0.421
2019 Zhang W, Ding W, Li YX, Tam C, Bougouffa S, Wang R, Pei B, Chiang H, Leung P, Lu Y, Sun J, Fu H, Bajic VB, Liu H, Webster NS, et al. Marine biofilms constitute a bank of hidden microbial diversity and functional potential. Nature Communications. 10: 517. PMID 30705275 DOI: 10.1038/S41467-019-08463-Z  0.487
2019 Cao H, Xia T, Li Y, Xu Z, Bougouffa S, Lo YK, Bajic VB, Luo H, Woo PCY, Yan A. A multidrug resistant clinical isolate in the MLST550 clonal complex: uncoupled quorum sensing modulates the interplay of virulence and resistance. Antimicrobial Agents and Chemotherapy. PMID 30670423 DOI: 10.1128/Aac.01944-18  0.333
2018 Razali R, Bougouffa S, Morton MJL, Lightfoot DJ, Alam I, Essack M, Arold ST, Kamau AA, Schmöckel SM, Pailles Y, Shahid M, Michell CT, Al-Babili S, Ho YS, Tester M, et al. The Genome Sequence of the Wild Tomato Provides Insights Into Salinity Tolerance. Frontiers in Plant Science. 9: 1402. PMID 30349549 DOI: 10.3389/Fpls.2018.01402  0.433
2018 Othoum G, Bougouffa S, Razali R, Bokhari A, Alamoudi S, Antunes A, Gao X, Hoehndorf R, Arold ST, Gojobori T, Hirt H, Mijakovic I, Bajic VB, Lafi FF, Essack M. In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters. Bmc Genomics. 19: 382. PMID 29788916 DOI: 10.1186/S12864-018-4796-5  0.416
2018 Zhang W, Tian RM, Sun J, Bougouffa S, Ding W, Cai L, Lan Y, Tong H, Li Y, Jamieson AJ, Bajic VB, Drazen JC, Bartlett D, Qian PY. Genome Reduction in Species within the Gut of an Amphipod from the Ocean's Deepest Point. Msystems. 3. PMID 29657971 DOI: 10.1128/mSystems.00009-18  0.395
2018 An R, Lin P, Bougouffa S, Essack M, Boxrud D, Bajic VB, Vidovic S. Draft Genome Sequences of Four Salmonella enterica subsp. enterica Serovar Enteritidis Strains Implicated in Infections of Avian and Human Hosts. Genome Announcements. 6. PMID 29371366 DOI: 10.1128/Genomea.01550-17  0.338
2017 Cao H, Lai Y, Bougouffa S, Xu Z, Yan A. Comparative genome and transcriptome analysis reveals distinctive surface characteristics and unique physiological potentials of Pseudomonas aeruginosa ATCC 27853. Bmc Genomics. 18: 459. PMID 28606056 DOI: 10.1186/S12864-017-3842-Z  0.417
2017 Shahmuradov IA, Mohamad Razali R, Bougouffa S, Radovanovic A, Bajic VB. bTSSfinder: a novel tool for the prediction of promoters in cyanobacteria and Escherichia coli. Bioinformatics (Oxford, England). 33: 334-340. PMID 27694198 DOI: 10.1093/Bioinformatics/Btw629  0.332
2016 Aranda M, Li Y, Liew YJ, Baumgarten S, Simakov O, Wilson MC, Piel J, Ashoor H, Bougouffa S, Bajic VB, Ryu T, Ravasi T, Bayer T, Micklem G, Kim H, et al. Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle. Scientific Reports. 6: 39734. PMID 28004835 DOI: 10.1038/Srep39734  0.405
2016 Al-Amoudi S, Razali R, Essack M, Amini MS, Bougouffa S, Archer JA, Lafi FF, Bajic VB. Metagenomics as a preliminary screen for antimicrobial bioprospecting. Gene. PMID 27642121 DOI: 10.1016/J.Gene.2016.09.021  0.386
2016 Al-Amoudi S, Essack M, Simões MF, Bougouffa S, Soloviev I, Archer JA, Lafi FF, Bajic VB. Bioprospecting Red Sea Coastal Ecosystems for Culturable Microorganisms and Their Antimicrobial Potential. Marine Drugs. 14. PMID 27626430 DOI: 10.3390/Md14090165  0.416
2016 Cao H, Dong C, Bougouffa S, Li J, Zhang W, Shao Z, Bajic VB, Qian PY. Delta-proteobacterial SAR324 group in hydrothermal plumes on the South Mid-Atlantic Ridge. Scientific Reports. 6: 22842. PMID 26953077 DOI: 10.1038/Srep22842  0.351
2016 Alzubaidy H, Essack M, Malas TB, Bokhari A, Motwalli O, Kamanu FK, Jamhor SA, Mokhtar NA, Antunes A, Simões MF, Alam I, Bougouffa S, Lafi FF, Bajic VB, Archer JA. Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea. Gene. 576: 626-36. PMID 26475934 DOI: 10.1016/J.Gene.2015.10.032  0.416
2016 Wang Y, Gao ZM, Li JT, Bougouffa S, Tian RM, Bajic VB, Qian PY. Draft genome of an Aerophobetes bacterium reveals a facultative lifestyle in deep-sea anaerobic sediments Science Bulletin. 61: 1176-1186. DOI: 10.1007/S11434-016-1135-6  0.458
2015 Salhi A, Essack M, Radovanovic A, Marchand B, Bougouffa S, Antunes A, Simoes MF, Lafi FF, Motwalli OA, Bokhari A, Malas T, Amoudi SA, Othum G, Allam I, Mineta K, et al. DESM: portal for microbial knowledge exploration systems. Nucleic Acids Research. PMID 26546514 DOI: 10.1093/Nar/Gkv1147  0.311
2015 Zhang W, Wang Y, Bougouffa S, Tian R, Cao H, Li Y, Cai L, Wong YH, Zhang G, Zhou G, Zhang X, Bajic VB, Al-Suwailem A, Qian PY. Synchronized dynamics of bacterial niche-specific functions during biofilm development in a cold seep brine pool. Environmental Microbiology. PMID 26171930 DOI: 10.1111/1462-2920.12978  0.468
2014 Tian RM, Lee OO, Wang Y, Cai L, Bougouffa S, Chiu JM, Wu RS, Qian PY. Effect of polybrominated diphenyl ether (PBDE) treatment on the composition and function of the bacterial community in the sponge Haliclona cymaeformis. Frontiers in Microbiology. 5: 799. PMID 25642227 DOI: 10.3389/Fmicb.2014.00799  0.406
2014 Tian RM, Wang Y, Bougouffa S, Gao ZM, Cai L, Zhang WP, Bajic V, Qian PY. Effect of copper treatment on the composition and function of the bacterial community in the sponge Haliclona cymaeformis. Mbio. 5: e01980. PMID 25370493 DOI: 10.1128/Mbio.01980-14  0.436
2014 Bougouffa S, Radovanovic A, Essack M, Bajic VB. DEOP: a database on osmoprotectants and associated pathways. Database : the Journal of Biological Databases and Curation. 2014. PMID 25326239 DOI: 10.1093/Database/Bau100  0.369
2014 Zhang WP, Wang Y, Tian RM, Bougouffa S, Yang B, Cao HL, Zhang G, Wong YH, Xu W, Batang Z, Al-Suwailem A, Zhang XX, Qian PY. Species sorting during biofilm assembly by artificial substrates deployed in a cold seep system. Scientific Reports. 4: 6647. PMID 25323200 DOI: 10.1038/Srep06647  0.415
2014 Wong YH, Ryu T, Seridi L, Ghosheh Y, Bougouffa S, Qian PY, Ravasi T. Transcriptome analysis elucidates key developmental components of bryozoan lophophore development. Scientific Reports. 4: 6534. PMID 25300304 DOI: 10.1038/Srep06534  0.309
2014 Tian RM, Wang Y, Bougouffa S, Gao ZM, Cai L, Bajic V, Qian PY. Genomic analysis reveals versatile heterotrophic capacity of a potentially symbiotic sulfur-oxidizing bacterium in sponge. Environmental Microbiology. 16: 3548-61. PMID 25088944 DOI: 10.1111/1462-2920.12586  0.453
2014 Gao ZM, Wang Y, Lee OO, Tian RM, Wong YH, Bougouffa S, Batang Z, Al-Suwailem A, Lafi FF, Bajic VB, Qian PY. Pyrosequencing reveals the microbial communities in the Red Sea sponge Carteriospongia foliascens and their impressive shifts in abnormal tissues. Microbial Ecology. 68: 621-32. PMID 24760170 DOI: 10.1007/S00248-014-0419-0  0.36
2014 Zhang W, Bougouffa S, Wang Y, Lee OO, Yang J, Chan C, Song X, Qian PY. Toward understanding the dynamics of microbial communities in an estuarine system. Plos One. 9: e94449. PMID 24732211 DOI: 10.1371/Journal.Pone.0094449  0.364
2014 Wang Y, Tian RM, Gao ZM, Bougouffa S, Qian PY. Optimal eukaryotic 18S and universal 16S/18S ribosomal RNA primers and their application in a study of symbiosis. Plos One. 9: e90053. PMID 24594623 DOI: 10.1371/Journal.Pone.0090053  0.374
2014 Lee OO, Wang Y, Tian R, Zhang W, Shek CS, Bougouffa S, Al-Suwailem A, Batang ZB, Xu W, Wang GC, Zhang X, Lafi FF, Bajic VB, Qian PY. In situ environment rather than substrate type dictates microbial community structure of biofilms in a cold seep system. Scientific Reports. 4: 3587. PMID 24399144 DOI: 10.1038/Srep03587  0.389
2013 Wang Y, Cao H, Zhang G, Bougouffa S, Lee OO, Al-Suwailem A, Qian PY. Autotrophic microbe metagenomes and metabolic pathways differentiate adjacent Red Sea brine pools. Scientific Reports. 3: 1748. PMID 23624511 DOI: 10.1038/Srep01748  0.353
2013 Bougouffa S, Yang JK, Lee OO, Wang Y, Batang Z, Al-Suwailem A, Qian PY. Distinctive microbial community structure in highly stratified deep-sea brine water columns. Applied and Environmental Microbiology. 79: 3425-37. PMID 23542623 DOI: 10.1128/Aem.00254-13  0.357
2012 Lee OO, Yang J, Bougouffa S, Wang Y, Batang Z, Tian R, Al-Suwailem A, Qian PY. Spatial and species variations in bacterial communities associated with corals from the Red Sea as revealed by pyrosequencing. Applied and Environmental Microbiology. 78: 7173-84. PMID 22865078 DOI: 10.1128/Aem.01111-12  0.412
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