| Year |
Citation |
Score |
| 2024 |
Elg CA, Mack E, Rolfsmeier M, McLean TC, Kosterlitz O, Soderling E, Narum S, Rowley PA, Thomas CM, Top EM. Evolution of a Plasmid Regulatory Circuit Ameliorates Plasmid Fitness Cost. Biorxiv : the Preprint Server For Biology. PMID 38370613 DOI: 10.1101/2024.02.05.579024 |
0.407 |
|
| 2024 |
Risely A, Newbury A, Stalder T, Simmons BI, Top EM, Buckling A, Sanders D. Host- plasmid network structure in wastewater is linked to antimicrobial resistance genes. Nature Communications. 15: 555. PMID 38228585 DOI: 10.1038/s41467-024-44827-w |
0.398 |
|
| 2023 |
Kosterlitz O, Grassi N, Werner B, McGee RS, Top EM, Kerr B. Evolutionary "crowdsourcing": alignment of fitness landscapes allows for cross-species adaptation of a horizontally transferred gene. Molecular Biology and Evolution. PMID 37931146 DOI: 10.1093/molbev/msad237 |
0.309 |
|
| 2023 |
Camargo AP, Call L, Roux S, Nayfach S, Huntemann M, Palaniappan K, Ratner A, Chu K, Mukherjeep S, Reddy T, Chen IA, Ivanova NN, Eloe-Fadrosh EA, Woyke T, Baltrus DA, ... ... Top E, et al. IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata. Nucleic Acids Research. PMID 37930866 DOI: 10.1093/nar/gkad964 |
0.342 |
|
| 2023 |
Castañeda-Barba S, Top EM, Stalder T. Plasmids, a molecular cornerstone of antimicrobial resistance in the One Health era. Nature Reviews. Microbiology. PMID 37430173 DOI: 10.1038/s41579-023-00926-x |
0.355 |
|
| 2023 |
Botts RT, Page DM, Bravo JA, Brown ML, Castilleja CC, Guzman VL, Hall S, Henderson JD, Kenney SM, Lensink ME, Paternoster MV, Pyle SL, Ustick L, Walters-Laird CJ, Top EM, et al. Polluted wetlands contain multidrug-resistance plasmids encoding CTX-M-type extended-spectrum β-lactamases. Plasmid. 126: 102682. PMID 37023995 DOI: 10.1016/j.plasmid.2023.102682 |
0.384 |
|
| 2022 |
Metzger GA, Ridenhour BJ, France M, Gliniewicz K, Millstein J, Settles ML, Forney LJ, Stalder T, Top EM. Biofilms preserve the transmissibility of a multi-drug resistance plasmid. Npj Biofilms and Microbiomes. 8: 95. PMID 36481746 DOI: 10.1038/s41522-022-00357-1 |
0.356 |
|
| 2021 |
Dunon V, Holmsgaard PN, Dealtry S, Lavigne R, Sørensen S, Smalla K, Top E, Springael D. Long range PCR reveals the genetic cargo of IncP-1 plasmids in the complex microbial community of an on-farm biopurification system treating pesticide contaminated wastewater. Applied and Environmental Microbiology. AEM0164821. PMID 34878814 DOI: 10.1128/AEM.01648-21 |
0.31 |
|
| 2021 |
Law A, Solano O, Brown CJ, Hunter SS, Fagnan M, Top EM, Stalder T. Biosolids as a Source of Antibiotic Resistance Plasmids for Commensal and Pathogenic Bacteria. Frontiers in Microbiology. 12: 606409. PMID 33967971 DOI: 10.3389/fmicb.2021.606409 |
0.412 |
|
| 2021 |
Loftie-Eaton W, Crabtree A, Perry D, Millstein J, Baytosh J, Stalder T, Robison BD, Forney LJ, Top EM. Contagious Antibiotic Resistance: Plasmid Transfer Among Bacterial Residents of the Zebrafish Gut. Applied and Environmental Microbiology. PMID 33637574 DOI: 10.1128/AEM.02735-20 |
0.376 |
|
| 2021 |
Hill D, Morra MJ, Stalder T, Jechalke S, Top E, Pollard AT, Popova I. Dairy manure as a potential source of crop nutrients and environmental contaminants. Journal of Environmental Sciences (China). 100: 117-130. PMID 33279025 DOI: 10.1016/J.Jes.2020.07.016 |
0.416 |
|
| 2020 |
Jordt H, Stalder T, Kosterlitz O, Ponciano JM, Top EM, Kerr B. Coevolution of host-plasmid pairs facilitates the emergence of novel multidrug resistance. Nature Ecology & Evolution. PMID 32251388 DOI: 10.1038/S41559-020-1170-1 |
0.504 |
|
| 2020 |
Stalder T, Cornwell B, Lacroix J, Kohler B, Dixon S, Yano H, Kerr B, Forney LJ, Top EM. EVOLVING POPULATIONS IN BIOFILMS CONTAIN MORE PERSISTENT PLASMIDS. Molecular Biology and Evolution. PMID 32027370 DOI: 10.1093/Molbev/Msaa024 |
0.482 |
|
| 2019 |
Stalder T, Press MO, Sullivan S, Liachko I, Top EM. Linking the resistome and plasmidome to the microbiome. The Isme Journal. PMID 31147603 DOI: 10.1038/S41396-019-0446-4 |
0.481 |
|
| 2018 |
Blau K, Bettermann A, Jechalke S, Fornefeld E, Vanrobaeys Y, Stalder T, Top EM, Smalla K. The Transferable Resistome of Produce. Mbio. 9. PMID 30401772 DOI: 10.1128/Mbio.01300-18 |
0.476 |
|
| 2018 |
Dunon V, Bers K, Lavigne R, Top EM, Springael D. Targeted metagenomics demonstrates the ecological role of IS1071 in bacterial community adaptation to pesticide degradation. Environmental Microbiology. PMID 30207068 DOI: 10.1111/1462-2920.14404 |
0.434 |
|
| 2017 |
Botts RT, Apffel BA, Walters CJ, Davidson KE, Echols RS, Geiger MR, Guzman VL, Haase VS, Montana MA, La Chat CA, Mielke JA, Mullen KL, Virtue CC, Brown CJ, Top EM, et al. Characterization of Four Multidrug Resistance Plasmids Captured from the Sediments of an Urban Coastal Wetland. Frontiers in Microbiology. 8: 1922. PMID 29067005 DOI: 10.3389/Fmicb.2017.01922 |
0.454 |
|
| 2017 |
Loftie-Eaton W, Bashford K, Quinn H, Dong K, Millstein J, Hunter S, Thomason MK, Merrikh H, Ponciano JM, Top EM. Compensatory mutations improve general permissiveness to antibiotic resistance plasmids. Nature Ecology & Evolution. 1: 1354-1363. PMID 29046540 DOI: 10.1038/S41559-017-0243-2 |
0.465 |
|
| 2017 |
Stalder T, Rogers LM, Renfrow C, Yano H, Smith Z, Top EM. Emerging patterns of plasmid-host coevolution that stabilize antibiotic resistance. Scientific Reports. 7: 4853. PMID 28687759 DOI: 10.1038/S41598-017-04662-0 |
0.493 |
|
| 2017 |
Ridenhour BJ, Metzger GA, France M, Gliniewicz K, Millstein J, Forney LJ, Top EM. Persistence of antibiotic resistance plasmids in bacterial biofilms. Evolutionary Applications. 10: 640-647. PMID 28616070 DOI: 10.1111/Eva.12480 |
0.452 |
|
| 2017 |
Thomas CM, Thomson NR, Cerdeño-Tárraga AM, Brown CJ, Top EM, Frost LS. Annotation of plasmid genes. Plasmid. PMID 28365184 DOI: 10.1016/J.Plasmid.2017.03.006 |
0.387 |
|
| 2016 |
Stalder T, Top E. Plasmid transfer in biofilms: a perspective on limitations and opportunities. Npj Biofilms and Microbiomes. 2. PMID 28480050 DOI: 10.1038/npjbiofilms.2016.22 |
0.347 |
|
| 2016 |
Yano H, Wegrzyn K, Loftie-Eaton W, Johnson J, Deckert GE, Rogers LM, Konieczny I, Top EM. Evolved plasmid-host interactions reduce plasmid interference cost. Molecular Microbiology. PMID 27121483 DOI: 10.1111/Mmi.13407 |
0.472 |
|
| 2016 |
Li H, Xu Z, Yang S, Li X, Top EM, Wang R, Zhang Y, Cai J, Yao F, Han X, Jiang Y. Responses of Soil Bacterial Communities to Nitrogen Deposition and Precipitation Increment Are Closely Linked with Aboveground Community Variation. Microbial Ecology. PMID 26838999 DOI: 10.1007/S00248-016-0730-Z |
0.315 |
|
| 2015 |
Borgogna TR, Borgogna JL, Mielke JA, Brown CJ, Top EM, Botts RT, Cummings DE. High Diversity of CTX-M Extended-Spectrum β-Lactamases in Municipal Wastewater and Urban Wetlands. Microbial Drug Resistance (Larchmont, N.Y.). PMID 26670020 DOI: 10.1089/Mdr.2015.0197 |
0.364 |
|
| 2015 |
Loftie-Eaton W, Yano H, Burleigh S, Simmons RS, Hughes JM, Rogers LM, Hunter SS, Settles ML, Forney LJ, Ponciano JM, Top EM. Evolutionary paths that expand plasmid host-range: implications for spread of antibiotic resistance. Molecular Biology and Evolution. PMID 26668183 DOI: 10.1093/Molbev/Msv339 |
0.51 |
|
| 2015 |
Li X, Wang Y, Brown CJ, Yao F, Jiang Y, Top EM, Li H. Diversification of Broad Host Range Plasmids Correlates with the Presence of Antibiotic Resistance Genes. Fems Microbiology Ecology. PMID 26635412 DOI: 10.1093/Femsec/Fiv151 |
0.503 |
|
| 2015 |
Smalla K, Jechalke S, Top EM. Plasmid Detection, Characterization, and Ecology. Microbiology Spectrum. 3: PLAS-0038-2014. PMID 26104560 DOI: 10.1128/Microbiolspec.Plas-0038-2014 |
0.519 |
|
| 2015 |
Loftie-Eaton W, Suzuki H, Bashford K, Heuer H, Stragier P, De Vos P, Settles ML, Top EM. Draft Genome Sequence of Pseudomonas sp. nov. H2. Genome Announcements. 3. PMID 25838493 DOI: 10.1128/Genomea.00241-15 |
0.368 |
|
| 2014 |
Li X, Top EM, Wang Y, Brown CJ, Yao F, Yang S, Jiang Y, Li H. The broad-host-range plasmid pSFA231 isolated from petroleum-contaminated sediment represents a new member of the PromA plasmid family. Frontiers in Microbiology. 5: 777. PMID 25628616 DOI: 10.3389/Fmicb.2014.00777 |
0.466 |
|
| 2014 |
Loftie-Eaton W, Tucker A, Norton A, Top EM. Flow cytometry and real-time quantitative PCR as tools for assessing plasmid persistence. Applied and Environmental Microbiology. 80: 5439-46. PMID 24973062 DOI: 10.1128/Aem.00793-14 |
0.436 |
|
| 2014 |
Hunter SS, Yano H, Loftie-Eaton W, Hughes J, De Gelder L, Stragier P, De Vos P, Settles ML, Top EM. Draft Genome Sequence of Pseudomonas moraviensis R28-S. Genome Announcements. 2. PMID 24558233 DOI: 10.1128/Genomea.00035-14 |
0.736 |
|
| 2013 |
Brown CJ, Sen D, Yano H, Bauer ML, Rogers LM, Van der Auwera GA, Top EM. Diverse broad-host-range plasmids from freshwater carry few accessory genes. Applied and Environmental Microbiology. 79: 7684-95. PMID 24096417 DOI: 10.1128/Aem.02252-13 |
0.706 |
|
| 2013 |
Yano H, Rogers LM, Knox MG, Heuer H, Smalla K, Brown CJ, Top EM. Host range diversification within the IncP-1 plasmid group. Microbiology (Reading, England). 159: 2303-15. PMID 24002747 DOI: 10.1099/Mic.0.068387-0 |
0.492 |
|
| 2013 |
Oliveira CS, Moura A, Henriques I, Brown CJ, Rogers LM, Top EM, Correia A. Comparative genomics of IncP-1ε plasmids from water environments reveals diverse and unique accessory genetic elements. Plasmid. 70: 412-9. PMID 23831558 DOI: 10.1016/J.Plasmid.2013.06.002 |
0.46 |
|
| 2013 |
Król JE, Wojtowicz AJ, Rogers LM, Heuer H, Smalla K, Krone SM, Top EM. Invasion of E. coli biofilms by antibiotic resistance plasmids. Plasmid. 70: 110-9. PMID 23558148 DOI: 10.1016/J.Plasmid.2013.03.003 |
0.452 |
|
| 2013 |
Sen D, Brown CJ, Top EM, Sullivan J. Inferring the evolutionary history of IncP-1 plasmids despite incongruence among backbone gene trees. Molecular Biology and Evolution. 30: 154-66. PMID 22936717 DOI: 10.1093/Molbev/Mss210 |
0.606 |
|
| 2012 |
Van Meervenne E, Van Coillie E, Kerckhof FM, Devlieghere F, Herman L, De Gelder LS, Top EM, Boon N. Strain-specific transfer of antibiotic resistance from an environmental plasmid to foodborne pathogens. Journal of Biomedicine & Biotechnology. 2012: 834598. PMID 22791963 DOI: 10.1155/2012/834598 |
0.756 |
|
| 2012 |
Hughes JM, Lohman BK, Deckert GE, Nichols EP, Settles M, Abdo Z, Top EM. The role of clonal interference in the evolutionary dynamics of plasmid-host adaptation. Mbio. 3: e00077-12. PMID 22761390 DOI: 10.1128/Mbio.00077-12 |
0.445 |
|
| 2012 |
Stolze Y, Eikmeyer F, Wibberg D, Brandis G, Karsten C, Krahn I, Schneiker-Bekel S, Viehöver P, Barsch A, Keck M, Top EM, Niehaus K, Schlüter A. IncP-1β plasmids of Comamonas sp. and Delftia sp. strains isolated from a wastewater treatment plant mediate resistance to and decolorization of the triphenylmethane dye crystal violet. Microbiology (Reading, England). 158: 2060-72. PMID 22653947 DOI: 10.1099/Mic.0.059220-0 |
0.451 |
|
| 2012 |
Eikmeyer F, Hadiati A, Szczepanowski R, Wibberg D, Schneiker-Bekel S, Rogers LM, Brown CJ, Top EM, Pühler A, Schlüter A. The complete genome sequences of four new IncN plasmids from wastewater treatment plant effluent provide new insights into IncN plasmid diversity and evolution. Plasmid. 68: 13-24. PMID 22326849 DOI: 10.1016/J.Plasmid.2012.01.011 |
0.53 |
|
| 2012 |
Heuer H, Binh CT, Jechalke S, Kopmann C, Zimmerling U, Krögerrecklenfort E, Ledger T, González B, Top E, Smalla K. IncP-1ε Plasmids are Important Vectors of Antibiotic Resistance Genes in Agricultural Systems: Diversification Driven by Class 1 Integron Gene Cassettes. Frontiers in Microbiology. 3: 2. PMID 22279444 DOI: 10.3389/Fmicb.2012.00002 |
0.501 |
|
| 2012 |
Yano H, Deckert GE, Rogers LM, Top EM. Roles of long and short replication initiation proteins in the fate of IncP-1 plasmids. Journal of Bacteriology. 194: 1533-43. PMID 22228734 DOI: 10.1128/Jb.06395-11 |
0.459 |
|
| 2012 |
Król JE, Penrod JT, McCaslin H, Rogers LM, Yano H, Stancik AD, Dejonghe W, Brown CJ, Parales RE, Wuertz S, Top EM. Role of IncP-1β plasmids pWDL7::rfp and pNB8c in chloroaniline catabolism as determined by genomic and functional analyses. Applied and Environmental Microbiology. 78: 828-38. PMID 22101050 DOI: 10.1128/Aem.07480-11 |
0.4 |
|
| 2012 |
Zhong X, Droesch J, Fox R, Top EM, Krone SM. On the meaning and estimation of plasmid transfer rates for surface-associated and well-mixed bacterial populations. Journal of Theoretical Biology. 294: 144-52. PMID 22085738 DOI: 10.1016/J.Jtbi.2011.10.034 |
0.357 |
|
| 2011 |
Sen D, Van der Auwera GA, Rogers LM, Thomas CM, Brown CJ, Top EM. Broad-host-range plasmids from agricultural soils have IncP-1 backbones with diverse accessory genes. Applied and Environmental Microbiology. 77: 7975-83. PMID 21948829 DOI: 10.1128/Aem.05439-11 |
0.687 |
|
| 2011 |
Król JE, Nguyen HD, Rogers LM, Beyenal H, Krone SM, Top EM. Increased transfer of a multidrug resistance plasmid in Escherichia coli biofilms at the air-liquid interface. Applied and Environmental Microbiology. 77: 5079-88. PMID 21642400 DOI: 10.1128/Aem.00090-11 |
0.405 |
|
| 2011 |
Subbiah M, Top EM, Shah DH, Call DR. Selection pressure required for long-term persistence of blaCMY-2-positive IncA/C plasmids. Applied and Environmental Microbiology. 77: 4486-93. PMID 21602382 DOI: 10.1128/Aem.02788-10 |
0.496 |
|
| 2011 |
Szczepanowski R, Eikmeyer F, Harfmann J, Blom J, Rogers LM, Top EM, Schlüter A. Sequencing and comparative analysis of IncP-1α antibiotic resistance plasmids reveal a highly conserved backbone and differences within accessory regions. Journal of Biotechnology. 155: 95-103. PMID 21115076 DOI: 10.1016/J.Jbiotec.2010.11.018 |
0.446 |
|
| 2011 |
Heuer H, Kopmann C, Zimmerling U, Krögerrecklenfort E, Kleineidamm K, Schloter M, Top EM, Smalla K. Effect of Veterinary Medicines Introduced via Manure into Soil on the Abundance and Diversity of Antibiotic Resistance Genes on Their Transferability Antimicrobial Resistance in the Environment. 453-463. DOI: 10.1002/9781118156247.ch23 |
0.334 |
|
| 2010 |
Suzuki H, Yano H, Brown CJ, Top EM. Predicting plasmid promiscuity based on genomic signature. Journal of Bacteriology. 192: 6045-55. PMID 20851899 DOI: 10.1128/Jb.00277-10 |
0.435 |
|
| 2010 |
Sota M, Yano H, Hughes JM, Daughdrill GW, Abdo Z, Forney LJ, Top EM. Shifts in the host range of a promiscuous plasmid through parallel evolution of its replication initiation protein. The Isme Journal. 4: 1568-80. PMID 20520653 DOI: 10.1038/Ismej.2010.72 |
0.461 |
|
| 2010 |
Król JE, Rogers LM, Krone SM, Top EM. Dual reporter system for in situ detection of plasmid transfer under aerobic and anaerobic conditions. Applied and Environmental Microbiology. 76: 4553-6. PMID 20453134 DOI: 10.1128/Aem.00226-10 |
0.32 |
|
| 2010 |
Sen D, Yano H, Suzuki H, Król JE, Rogers L, Brown CJ, Top EM. Comparative genomics of pAKD4, the prototype IncP-1delta plasmid with a complete backbone. Plasmid. 63: 98-107. PMID 20018208 DOI: 10.1016/J.Plasmid.2009.11.005 |
0.674 |
|
| 2010 |
Zhong X, Krol JE, Top EM, Krone SM. Accounting for mating pair formation in plasmid population dynamics. Journal of Theoretical Biology. 262: 711-9. PMID 19835890 DOI: 10.1016/J.Jtbi.2009.10.013 |
0.427 |
|
| 2009 |
Van der Auwera GA, Król JE, Suzuki H, Foster B, Van Houdt R, Brown CJ, Mergeay M, Top EM. Plasmids captured in C. metallidurans CH34: defining the PromA family of broad-host-range plasmids. Antonie Van Leeuwenhoek. 96: 193-204. PMID 19259779 DOI: 10.1007/S10482-009-9316-9 |
0.49 |
|
| 2009 |
Heuer H, Kopmann C, Binh CT, Top EM, Smalla K. Spreading antibiotic resistance through spread manure: characteristics of a novel plasmid type with low %G+C content. Environmental Microbiology. 11: 937-49. PMID 19055690 DOI: 10.1111/J.1462-2920.2008.01819.X |
0.489 |
|
| 2008 |
Suzuki H, Sota M, Brown CJ, Top EM. Using Mahalanobis distance to compare genomic signatures between bacterial plasmids and chromosomes. Nucleic Acids Research. 36: e147. PMID 18953039 DOI: 10.1093/Nar/Gkn753 |
0.462 |
|
| 2008 |
Suzuki H, Brown CJ, Forney LJ, Top EM. Comparison of correspondence analysis methods for synonymous codon usage in bacteria. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 15: 357-65. PMID 18940873 DOI: 10.1093/Dnares/Dsn028 |
0.348 |
|
| 2008 |
Fox RE, Zhong X, Krone SM, Top EM. Spatial structure and nutrients promote invasion of IncP-1 plasmids in bacterial populations. The Isme Journal. 2: 1024-39. PMID 18528415 DOI: 10.1038/Ismej.2008.53 |
0.388 |
|
| 2008 |
De Gelder L, Williams JJ, Ponciano JM, Sota M, Top EM. Adaptive plasmid evolution results in host-range expansion of a broad-host-range plasmid. Genetics. 178: 2179-90. PMID 18430943 DOI: 10.1534/Genetics.107.084475 |
0.731 |
|
| 2008 |
Sota M, Top EM. Host-specific factors determine the persistence of IncP-1 plasmids World Journal of Microbiology and Biotechnology. 24: 1951-1954. DOI: 10.1007/S11274-008-9653-2 |
0.498 |
|
| 2007 |
Krone SM, Lu R, Fox R, Suzuki H, Top EM. Modelling the spatial dynamics of plasmid transfer and persistence. Microbiology (Reading, England). 153: 2803-16. PMID 17660444 DOI: 10.1099/Mic.0.2006/004531-0 |
0.424 |
|
| 2007 |
Schlüter A, Szczepanowski R, Pühler A, Top EM. Genomics of IncP-1 antibiotic resistance plasmids isolated from wastewater treatment plants provides evidence for a widely accessible drug resistance gene pool. Fems Microbiology Reviews. 31: 449-77. PMID 17553065 DOI: 10.1111/J.1574-6976.2007.00074.X |
0.468 |
|
| 2007 |
Sota M, Tsuda M, Yano H, Suzuki H, Forney LJ, Top EM. Region-specific insertion of transposons in combination with selection for high plasmid transferability and stability accounts for the structural similarity of IncP-1 plasmids. Journal of Bacteriology. 189: 3091-8. PMID 17277066 DOI: 10.1128/Jb.01906-06 |
0.402 |
|
| 2007 |
De Gelder L, Ponciano JM, Joyce P, Top EM. Stability of a promiscuous plasmid in different hosts: no guarantee for a long-term relationship. Microbiology (Reading, England). 153: 452-63. PMID 17259616 DOI: 10.1099/Mic.0.2006/001784-0 |
0.738 |
|
| 2007 |
Ponciano JM, De Gelder L, Top EM, Joyce P. The population biology of bacterial plasmids: a hidden Markov model approach. Genetics. 176: 957-68. PMID 17151258 DOI: 10.1534/Genetics.106.061937 |
0.745 |
|
| 2007 |
Heuer H, Fox RE, Top EM. Frequent conjugative transfer accelerates adaptation of a broad-host-range plasmid to an unfavorable Pseudomonas putida host. Fems Microbiology Ecology. 59: 738-48. PMID 17059480 DOI: 10.1111/J.1574-6941.2006.00223.X |
0.434 |
|
| 2006 |
Kamachi K, Sota M, Tamai Y, Nagata N, Konda T, Inoue T, Top EM, Arakawa Y. Plasmid pBP136 from Bordetella pertussis represents an ancestral form of IncP-1beta plasmids without accessory mobile elements. Microbiology (Reading, England). 152: 3477-84. PMID 17159199 DOI: 10.1099/Mic.0.29056-0 |
0.423 |
|
| 2006 |
Sota M, Yano H, Ono A, Miyazaki R, Ishii H, Genka H, Top EM, Tsuda M. Genomic and functional analysis of the IncP-9 naphthalene-catabolic plasmid NAH7 and its transposon Tn4655 suggests catabolic gene spread by a tyrosine recombinase. Journal of Bacteriology. 188: 4057-67. PMID 16707697 DOI: 10.1128/Jb.00185-06 |
0.402 |
|
| 2006 |
Hendrickx B, Dejonghe W, Faber F, Boënne W, Bastiaens L, Verstraete W, Top EM, Springael D. PCR-DGGE method to assess the diversity of BTEX mono-oxygenase genes at contaminated sites. Fems Microbiology Ecology. 55: 262-73. PMID 16420634 DOI: 10.1111/J.1574-6941.2005.00018.X |
0.42 |
|
| 2006 |
Hendrickx B, Junca H, Vosahlova J, Lindner A, Rüegg I, Bucheli-Witschel M, Faber F, Egli T, Mau M, Schlömann M, Brennerova M, Brenner V, Pieper DH, Top EM, Dejonghe W, et al. Alternative primer sets for PCR detection of genotypes involved in bacterial aerobic BTEX degradation: distribution of the genes in BTEX degrading isolates and in subsurface soils of a BTEX contaminated industrial site. Journal of Microbiological Methods. 64: 250-65. PMID 15949858 DOI: 10.1016/J.Mimet.2005.04.018 |
0.439 |
|
| 2005 |
Leys NM, Ryngaert A, Bastiaens L, Wattiau P, Top EM, Verstraete W, Springael D. Occurrence and community composition of fast-growing Mycobacterium in soils contaminated with polycyclic aromatic hydrocarbons. Fems Microbiology Ecology. 51: 375-88. PMID 16329885 DOI: 10.1016/J.Femsec.2004.09.015 |
0.391 |
|
| 2005 |
De Gelder L, Vandecasteele FP, Brown CJ, Forney LJ, Top EM. Plasmid donor affects host range of promiscuous IncP-1beta plasmid pB10 in an activated-sludge microbial community. Applied and Environmental Microbiology. 71: 5309-17. PMID 16151119 DOI: 10.1128/Aem.71.9.5309-5317.2005 |
0.761 |
|
| 2005 |
Schlüter A, Heuer H, Szczepanowski R, Poler SM, Schneiker S, Pühler A, Top EM. Plasmid pB8 is closely related to the prototype IncP-1beta plasmid R751 but transfers poorly to Escherichia coli and carries a new transposon encoding a small multidrug resistance efflux protein. Plasmid. 54: 135-48. PMID 16122561 DOI: 10.1016/J.Plasmid.2005.03.001 |
0.462 |
|
| 2005 |
Leys NM, Ryngaert A, Bastiaens L, Top EM, Verstraete W, Springael D. Culture independent detection of Sphingomonas sp. EPA 505 related strains in soils contaminated with polycyclic aromatic hydrocarbons (PAHs). Microbial Ecology. 49: 443-50. PMID 16003481 DOI: 10.1007/S00248-004-0011-0 |
0.414 |
|
| 2005 |
Hendrickx B, Dejonghe W, Boënne W, Brennerova M, Cernik M, Lederer T, Bucheli-Witschel M, Bastiaens L, Verstraete W, Top EM, Diels L, Springael D. Dynamics of an oligotrophic bacterial aquifer community during contact with a groundwater plume contaminated with benzene, toluene, ethylbenzene, and xylenes: an in situ mesocosm study. Applied and Environmental Microbiology. 71: 3815-25. PMID 16000793 DOI: 10.1128/Aem.71.7.3815-3825.2005 |
0.359 |
|
| 2005 |
Joyce P, Abdo Z, Ponciano JM, De Gelder L, Forney LJ, Top EM. Modeling the impact of periodic bottlenecks, unidirectional mutation, and observational error in experimental evolution. Journal of Mathematical Biology. 50: 645-62. PMID 15614551 DOI: 10.1007/S00285-004-0300-8 |
0.733 |
|
| 2005 |
Seghers D, Siciliano SD, Top EM, Verstraete W. Combined effect of fertilizer and herbicide applications on the abundance, community structure and performance of the soil methanotrophic community Soil Biology and Biochemistry. 37: 187-193. DOI: 10.1016/J.Soilbio.2004.05.025 |
0.31 |
|
| 2004 |
De Gelder L, Ponciano JM, Abdo Z, Joyce P, Forney LJ, Top EM. Combining mathematical models and statistical methods to understand and predict the dynamics of antibiotic-sensitive mutants in a population of resistant bacteria during experimental evolution. Genetics. 168: 1131-44. PMID 15579675 DOI: 10.1534/Genetics.104.033431 |
0.732 |
|
| 2004 |
Heuer H, Szczepanowski R, Schneiker S, Pühler A, Top EM, Schlüter A. The complete sequences of plasmids pB2 and pB3 provide evidence for a recent ancestor of the IncP-1beta group without any accessory genes. Microbiology (Reading, England). 150: 3591-9. PMID 15528648 DOI: 10.1099/Mic.0.27304-0 |
0.406 |
|
| 2004 |
Leys NM, Ryngaert A, Bastiaens L, Verstraete W, Top EM, Springael D. Occurrence and phylogenetic diversity of Sphingomonas strains in soils contaminated with polycyclic aromatic hydrocarbons. Applied and Environmental Microbiology. 70: 1944-55. PMID 15066784 DOI: 10.1128/Aem.70.4.1944-1955.2004 |
0.421 |
|
| 2004 |
Springael D, Top EM. Horizontal gene transfer and microbial adaptation to xenobiotics: new types of mobile genetic elements and lessons from ecological studies. Trends in Microbiology. 12: 53-8. PMID 15040322 DOI: 10.1016/J.Tim.2003.12.010 |
0.415 |
|
| 2004 |
Seghers D, Wittebolle L, Top EM, Verstraete W, Siciliano SD. Impact of agricultural practices on the Zea mays L. endophytic community. Applied and Environmental Microbiology. 70: 1475-82. PMID 15006768 DOI: 10.1128/Aem.70.3.1475-1482.2004 |
0.313 |
|
| 2003 |
Seghers D, Verthé K, Reheul D, Bulcke R, Siciliano SD, Verstraete W, Top EM. Effect of long-term herbicide applications on the bacterial community structure and function in an agricultural soil. Fems Microbiology Ecology. 46: 139-46. PMID 19719567 DOI: 10.1016/S0168-6496(03)00205-8 |
0.344 |
|
| 2003 |
Schlüter A, Heuer H, Szczepanowski R, Forney LJ, Thomas CM, Pühler A, Top EM. The 64 508 bp IncP-1beta antibiotic multiresistance plasmid pB10 isolated from a waste-water treatment plant provides evidence for recombination between members of different branches of the IncP-1beta group. Microbiology (Reading, England). 149: 3139-53. PMID 14600226 DOI: 10.1099/Mic.0.26570-0 |
0.416 |
|
| 2003 |
Seghers D, Top EM, Reheul D, Bulcke R, Boeckx P, Verstraete W, Siciliano SD. Long-term effects of mineral versus organic fertilizers on activity and structure of the methanotrophic community in agricultural soils. Environmental Microbiology. 5: 867-77. PMID 14510840 DOI: 10.1046/J.1462-2920.2003.00477.X |
0.305 |
|
| 2003 |
Gstalder ME, Faelen M, Mine N, Top EM, Mergeay M, Couturier M. Replication functions of new broad host range plasmids isolated from polluted soils. Research in Microbiology. 154: 499-509. PMID 14499936 DOI: 10.1016/S0923-2508(03)00143-8 |
0.329 |
|
| 2003 |
Top EM, Springael D. The role of mobile genetic elements in bacterial adaptation to xenobiotic organic compounds. Current Opinion in Biotechnology. 14: 262-9. PMID 12849778 DOI: 10.1016/S0958-1669(03)00066-1 |
0.446 |
|
| 2003 |
Dejonghe W, Berteloot E, Goris J, Boon N, Crul K, Maertens S, Höfte M, De Vos P, Verstraete W, Top EM. Synergistic degradation of linuron by a bacterial consortium and isolation of a single linuron-degrading variovorax strain. Applied and Environmental Microbiology. 69: 1532-41. PMID 12620840 DOI: 10.1128/Aem.69.3.1532-1541.2003 |
0.36 |
|
| 2003 |
Boon N, Top EM, Verstraete W, Siciliano SD. Bioaugmentation as a tool to protect the structure and function of an activated-sludge microbial community against a 3-chloroaniline shock load. Applied and Environmental Microbiology. 69: 1511-20. PMID 12620837 DOI: 10.1128/Aem.69.3.1511-1520.2003 |
0.314 |
|
| 2003 |
Govoreanu R, Seghers D, Nopens I, Clercq BD, Saveyn H, Capalozza C, Meeren PVd, Verstraete W, Top E, Vanrolleghem PA. Linking floc structure and settling properties to activated sludge population dynamics in an SBR. Water Science and Technology. 47: 9-18. DOI: 10.2166/Wst.2003.0622 |
0.329 |
|
| 2003 |
Seghers D, Bulcke R, Reheul D, Siciliano SD, Top EM, Verstraete W. Pollution induced community tolerance (PICT) and analysis of 16S rRNA genes to evaluate the long-term effects of herbicides on methanotrophic communities in soil European Journal of Soil Science. 54: 679-684. DOI: 10.1046/J.1351-0754.2003.0560.X |
0.308 |
|
| 2002 |
Dejonghe W, Goris J, Dierickx A, De Dobbeleer V, Crul K, De Vos P, Verstraete W, Top EM. Diversity of 3-chloroaniline and 3,4-dichloroaniline degrading bacteria isolated from three different soils and involvement of their plasmids in chloroaniline degradation. Fems Microbiology Ecology. 42: 315-25. PMID 19709291 DOI: 10.1111/J.1574-6941.2002.Tb01021.X |
0.389 |
|
| 2002 |
Top EM, Springael D, Boon N. Catabolic mobile genetic elements and their potential use in bioaugmentation of polluted soils and waters. Fems Microbiology Ecology. 42: 199-208. PMID 19709279 DOI: 10.1111/J.1574-6941.2002.Tb01009.X |
0.449 |
|
| 2002 |
Boon N, Windt W, Verstraete W, Top EM. Evaluation of nested PCR-DGGE (denaturing gradient gel electrophoresis) with group-specific 16S rRNA primers for the analysis of bacterial communities from different wastewater treatment plants. Fems Microbiology Ecology. 39: 101-12. PMID 19709189 DOI: 10.1111/J.1574-6941.2002.Tb00911.X |
0.362 |
|
| 2002 |
Boon N, De Gelder L, Lievens H, Siciliano SD, Top EM, Verstraete W. Bioaugmenting bioreactors for the continuous removal of 3-chloroaniline by a slow release approach. Environmental Science & Technology. 36: 4698-704. PMID 12433184 DOI: 10.1021/Es020076Q |
0.683 |
|
| 2002 |
Goris J, Dejonghe W, Falsen E, De Clerck E, Geeraerts B, Willems A, Top EM, Vandamme P, De Vos P. Diversity of transconjugants that acquired plasmid pJP4 or pEMT1 after inoculation of a donor strain in the A- and B-horizon of an agricultural soil and description of Burkholderia hospita sp. nov. and Burkholderia terricola sp. nov. Systematic and Applied Microbiology. 25: 340-52. PMID 12421072 DOI: 10.1078/0723-2020-00134 |
0.393 |
|
| 2002 |
Dejonghe W, Boon N, Seghers D, Top EM, Verstraete W. Bioaugmentation of soils by increasing microbial richness: missing links. Environmental Microbiology. 3: 649-57. PMID 11722545 DOI: 10.1046/J.1462-2920.2001.00236.X |
0.337 |
|
| 2001 |
Dewettinck T, Hulsbosch W, Hege KV, Top EM, Verstraete W. Molecular fingerprinting of bacterial populations in groundwater and bottled mineral water. Applied Microbiology and Biotechnology. 57: 412-418. PMID 11759695 DOI: 10.1007/S002530100797 |
0.303 |
|
| 2001 |
Muthumbi W, Boon N, Boterdaele R, Vreese ID, Top EM, Verstraete W. Microbial sulfate reduction with acetate: process performance and composition of the bacterial communities in the reactor at different salinity levels. Applied Microbiology and Biotechnology. 55: 787-793. PMID 11525630 DOI: 10.1007/S002530100623 |
0.326 |
|
| 2001 |
Bossier P, Top EM, Huys G, Kersters K, Boonaert CJ, Rouxhet PG, Verstraete W. Modification of the aggregation behaviour of the environmental Ralstonia eutropha-like strain AE815 is reflected by both surface hydrophobicity and amplified fragment length polymorphism (AFLP) patterns. Environmental Microbiology. 2: 51-8. PMID 11243262 DOI: 10.1046/J.1462-2920.2000.00082.X |
0.351 |
|
| 2001 |
Boon N, Goris J, De Vos P, Verstraete W, Top EM. Genetic diversity among 3-chloroaniline- and aniline-degrading strains of the Comamonadaceae. Applied and Environmental Microbiology. 67: 1107-15. PMID 11229899 DOI: 10.1128/Aem.67.3.1107-1115.2001 |
0.41 |
|
| 2001 |
Dejonghe W, Goris J, El Fantroussi S, Höfte M, De Vos P, Verstraete W, Top EM. Effect of dissemination of 2,4-dichlorophenoxyacetic acid (2,4-D) degradation plasmids on 2,4-D degradation and on bacterial community structure in two different soil horizons. Applied and Environmental Microbiology. 66: 3297-304. PMID 10919784 DOI: 10.1128/Aem.66.8.3297-3304.2000 |
0.359 |
|
| 2001 |
Rombaut G, Suantika G, Boon N, Maertens S, Dhert P, Top E, Sorgeloos P, Verstraete W. Monitoring of the evolving diversity of the microbial community present in rotifer cultures Aquaculture. 198: 237-252. DOI: 10.1016/S0044-8486(01)00594-4 |
0.378 |
|
| 2000 |
Boon N, Marle C, Top EM, Verstraete W. Comparison of the spatial homogeneity of physico-chemical parameters and bacterial 16S rRNA genes in sediment samples from a dumping site for dredging sludge. Applied Microbiology and Biotechnology. 53: 742-747. PMID 10919337 DOI: 10.1007/S002530000325 |
0.365 |
|
| 2000 |
Boon N, Goris J, De Vos P, Verstraete W, Top EM. Bioaugmentation of activated sludge by an indigenous 3-chloroaniline-degrading Comamonas testosteroni strain, I2gfp. Applied and Environmental Microbiology. 66: 2906-13. PMID 10877785 DOI: 10.1128/Aem.66.7.2906-2913.2000 |
0.398 |
|
| 1999 |
el Fantroussi S, Verschuere L, Verstraete W, Top EM. Effect of phenylurea herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprints and community-level physiological profiles. Applied and Environmental Microbiology. 65: 982-8. PMID 10049851 DOI: 10.1128/Aem.65.3.982-988.1999 |
0.354 |
|
| 1999 |
Dr�nen AK, Torsvik V, Top EM. Comparison of the plasmid types obtained by two distantly related recipients in biparental exogenous plasmid isolations from soil Fems Microbiology Letters. 176: 105-110. DOI: 10.1111/J.1574-6968.1999.Tb13649.X |
0.451 |
|
| 1999 |
Top EM, Maila MP, Clerinx M, Goris J, Vos P, Verstraete W. Methane oxidation as a method to evaluate the removal of 2,4-dichlorophenoxyactic acid (2,4-D) from soil by plasmid-mediated bioaugmentation Fems Microbiology Ecology. 28: 203-213. DOI: 10.1111/J.1574-6941.1999.Tb00576.X |
0.359 |
|
| 1999 |
El Fantroussi S, Belkacemi M, Top EM, Mahillon J, Naveau H, Agathos SN. Bioaugmentation of a Soil Bioreactor Designed for Pilot-Scale Anaerobic Bioremediation Studies Environmental Science & Technology. 33: 2992-3001. DOI: 10.1021/Es981353P |
0.347 |
|
| 1998 |
Top EM, Van Daele P, De Saeyer N, Forney LJ. Enhancement of 2,4-dichlorophenoxyacetic acid (2,4-D) degradation in soil by dissemination of catabolic plasmids. Antonie Van Leeuwenhoek. 73: 87-94. PMID 9602282 DOI: 10.1023/A:1000663619522 |
0.35 |
|
| 1998 |
Drønen AK, Torsvik V, Goksøyr J, Top EM. Effect of mercury addition on plasmid incidence and gene mobilizing capacity in bulk soil Fems Microbiology Ecology. 27: 381-394. DOI: 10.1111/J.1574-6941.1998.Tb00553.X |
0.426 |
|
| 1998 |
Limbergen HV, Top EM, Verstraete W. Bioaugmentation in activated sludge: current features and future perspectives Applied Microbiology and Biotechnology. 50: 16-23. DOI: 10.1007/S002530051250 |
0.377 |
|
| 1996 |
Top EM, Maltseva OV, Forney LJ. Capture of a catabolic plasmid that encodes only 2,4-dichlorophenoxyacetic acid:alpha-ketoglutaric acid dioxygenase (TfdA) by genetic complementation. Applied and Environmental Microbiology. 62: 2470-6. PMID 8779586 DOI: 10.1128/Aem.62.7.2470-2476.1996 |
0.486 |
|
| 1996 |
Top E, Holben W, Forney L. Capture of 2,4-dichlorophenoxyacetic acid degradative genes from soil microbial communities International Biodeterioration & Biodegradation. 37: 253. DOI: 10.1016/0964-8305(96)88319-3 |
0.351 |
|
| 1995 |
Top EM, Holben WE, Forney LJ. Characterization of diverse 2,4-dichlorophenoxyacetic acid-degradative plasmids isolated from soil by complementation. Applied and Environmental Microbiology. 61: 1691-8. PMID 7646006 DOI: 10.1128/Aem.61.5.1691-1698.1995 |
0.419 |
|
| 1995 |
Top EM, De Rore H, Collard JM, Gellens V, Slobodkina G, Verstraete W, Mergeay M. Retromobilization of heavy metal resistance genes in unpolluted and heavy metal polluted soil Fems Microbiology Ecology. 18: 191-203. DOI: 10.1016/0168-6496(95)00054-7 |
0.366 |
|
| 1994 |
Top E, De Smet I, Verstraete W, Dijkmans R, Mergeay M. Exogenous isolation of mobilizing plasmids from polluted soils and sludges. Applied and Environmental Microbiology. 60: 831-9. PMID 16349216 DOI: 10.1128/Aem.60.3.831-839.1994 |
0.396 |
|
| 1994 |
Rore H, Demolder K, Wilde K, Top E, Houwen F, Verstraete W. Transfer of the catabolic plasmid RP4::Tn4371 to indigenous soil bacteria and its effect on respiration and biphenyl breakdown Fems Microbiology Ecology. 15: 71-77. DOI: 10.1111/J.1574-6941.1994.Tb00231.X |
0.42 |
|
| 1994 |
Rore H, Top E, Houwen F, Mergeay M, Verstraete W. Evolution of heavy metal resistant transconjugants in a soil environment with a concomitant selective pressure Fems Microbiology Ecology. 14: 263-274. DOI: 10.1111/J.1574-6941.1994.Tb00112.X |
0.366 |
|
| 1993 |
Diels L, Springael D, van der Lelie N, Top E, Mergeay M. Use of DNA probes and plasmid capture in a search for new interesting environmental genes Science of the Total Environment, The. 139: 471-478. PMID 8272850 DOI: 10.1016/0048-9697(93)90044-7 |
0.443 |
|
| 1992 |
Top E, Vanrolleghem P, Mergeay M, Verstraete W. Determination of the mechanism of retrotransfer by mechanistic mathematical modeling Journal of Bacteriology. 174: 5953-5960. PMID 1522069 DOI: 10.1128/Jb.174.18.5953-5960.1992 |
0.378 |
|
| 1990 |
Top E, Mergeay M, Springael D, Verstraete W. Gene escape model: Transfer of heavy metal resistance genes from Escherichia coli to Alcaligenes eutrophus on agar plates and in soil samples Applied and Environmental Microbiology. 56: 2471-2479. PMID 2206101 DOI: 10.1128/Aem.56.8.2471-2479.1990 |
0.444 |
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