Arul Jayaraman - Publications

Affiliations: 
Texas A & M University, College Station, TX, United States 
Area:
Chemical Engineering, Microbiology Biology

74 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Han H, Davidson LA, Fan YY, Goldsby JS, Yoon G, Jin UH, Wright GA, Landrock KK, Weeks BR, Wright RC, Allred CD, Jayaraman A, Ivanov I, Roper J, Safe SH, et al. Loss of aryl hydrocarbon receptor potentiates FoxM1 signaling to enhance self-renewal of colonic stem and progenitor cells. The Embo Journal. e104319. PMID 32915464 DOI: 10.15252/Embj.2019104319  0.305
2020 Maiti S, Grivas G, Choi K, Dai W, Ding Y, Acosta DP, Hahn J, Jayaraman A. MODELING INTER-KINGDOM REGULATION OF INFLAMMATORY SIGNALING IN HUMAN INTESTINAL EPITHELIAL CELLS. Computers & Chemical Engineering. 140. PMID 32669746 DOI: 10.1016/J.Compchemeng.2020.106954  0.765
2020 Yang J, Chawla R, Rhee KY, Gupta R, Manson MD, Jayaraman A, Lele PP. Biphasic chemotaxis of to the microbiota metabolite indole. Proceedings of the National Academy of Sciences of the United States of America. PMID 32123098 DOI: 10.1073/Pnas.1916974117  0.34
2019 Park H, Jin UH, Orr AA, Echegaray SP, Davidson LA, Allred CD, Chapkin R, Jayaraman A, Lee K, Tamamis P, Safe SH. Isoflavones as Ah Receptor Agonists in Colon-Derived Cell Lines: Structure-Activity Relationships. Chemical Research in Toxicology. PMID 31621310 DOI: 10.1021/Acs.Chemrestox.9B00352  0.312
2019 Lee D, Jayaraman A, Sang-Il Kwon J. Identification of a time-varying intracellular signalling model through data clustering and parameter selection: application to NF-[inline-formula removed]B signalling pathway induced by LPS in the presence of BFA. Iet Systems Biology. 13: 169-179. PMID 31318334 DOI: 10.1049/Iet-Syb.2018.5079  0.317
2019 Ding Y, Yanagi K, Cheng C, Alaniz RC, Lee K, Jayaraman A. Interactions between gut microbiota and non-alcoholic liver disease: the role of microbiota-derived metabolites. Pharmacological Research. PMID 30660825 DOI: 10.1016/J.Phrs.2019.01.029  0.321
2018 Sinkoe A, Jayaraman A, Hahn J. Dynamic optimal experimental design yields marginal improvement over steady-state results for computational maximisation of regulatory T-cell induction in ex vivo culture. Iet Systems Biology. 12: 241-246. PMID 30472687 DOI: 10.1049/Iet-Syb.2018.5014  0.704
2018 DeLuca JA, Allred KF, Menon R, Riordan R, Weeks BR, Jayaraman A, Allred CD. Bisphenol-A alters microbiota metabolites derived from aromatic amino acids and worsens disease activity during colitis. Experimental Biology and Medicine (Maywood, N.J.). 1535370218782139. PMID 29874946 DOI: 10.1177/1535370218782139  0.305
2018 Krishnan S, Ding Y, Saedi N, Choi M, Sridharan GV, Sherr DH, Yarmush ML, Alaniz RC, Jayaraman A, Lee K. Gut Microbiota-Derived Tryptophan Metabolites Modulate Inflammatory Response in Hepatocytes and Macrophages. Cell Reports. 23: 1099-1111. PMID 29694888 DOI: 10.1016/J.Celrep.2018.03.109  0.338
2018 Jin UH, Park H, Li X, Davidson LA, Allred C, Patil B, Jayaprakasha G, Orr AA, Mao L, Chapkin RS, Jayaraman A, Tamamis P, Safe S. Structure-Dependent Modulation of Aryl Hydrocarbon Receptor-Mediated Activities by Flavones. Toxicological Sciences : An Official Journal of the Society of Toxicology. PMID 29584932 DOI: 10.1093/Toxsci/Kfy075  0.304
2018 Sule N, Penarete-Acosta D, Englert DL, Jayaraman A. A Static Microfluidic Device for Investigating the Chemotaxis Response to Stable, Non-linear Gradients. Methods in Molecular Biology (Clifton, N.J.). 1729: 47-59. PMID 29429081 DOI: 10.1007/978-1-4939-7577-8_5  0.767
2018 Olson ML, Jayaraman A, Kao KC. Relative abundance of Candida albicans and Candida glabrata in in vitro co-culture biofilms impacts biofilm structure and formation. Applied and Environmental Microbiology. PMID 29427422 DOI: 10.1128/Aem.02769-17  0.355
2018 Kohli N, Crisp Z, Riordan R, Li M, Alaniz RC, Jayaraman A. The microbiota metabolite indole inhibits Salmonella virulence: Involvement of the PhoPQ two-component system. Plos One. 13: e0190613. PMID 29342189 DOI: 10.1371/Journal.Pone.0190613  0.397
2017 Jani S, Seely AL, Peabody V GL, Jayaraman A, Manson MD. Chemotaxis to self-generated AI-2 promotes biofilm formation in Escherichia coli. Microbiology (Reading, England). PMID 29125461 DOI: 10.1099/Mic.0.000567  0.417
2017 Pasupuleti S, Sule N, Manson MD, Jayaraman A. Conversion of Norepinephrine to 3,4-Dihdroxymandelic Acid in Escherichia coli Requires the QseBC Quorum-Sensing System and the FeaR Transcription Factor. Journal of Bacteriology. PMID 29038253 DOI: 10.1128/Jb.00564-17  0.405
2017 Sule N, Pasupuleti S, Kohli N, Menon R, Dangott LJ, Manson MD, Jayaraman A. The Norepinephrine Metabolite 3,4-Dihydroxymandelic Acid Is Produced by the Commensal Microbiota and Promotes Chemotaxis and Virulence Gene Expression in Enterohemorrhagic Escherichia coli. Infection and Immunity. PMID 28717028 DOI: 10.1128/Iai.00431-17  0.365
2017 Steinmeyer S, Howsmon DP, Alaniz RC, Hahn J, Jayaraman A. Empirical Modeling of T cell Activation Predicts Interplay of Host Cytokines and Bacterial Indole. Biotechnology and Bioengineering. PMID 28667749 DOI: 10.1002/Bit.26371  0.722
2016 Cheng Y, Jin UH, Davidson LA, Chapkin RS, Jayaraman A, Tamamis P, Orr A, Allred C, Denison MS, Soshilov A, Weaver E, Safe S. Microbial-Derived 1,4-Dihydroxy-2-naphthoic Acid and Related Compounds as Aryl Hydrocarbon Receptor Agonists/Antagonists: Structure-Activity Relationships and Receptor Modeling. Toxicological Sciences : An Official Journal of the Society of Toxicology. PMID 27837168 DOI: 10.1093/Toxsci/Kfw230  0.318
2016 Whitfield-Cargile CM, Cohen ND, Chapkin RS, Weeks BR, Davidson LA, Goldsby JS, Hunt CL, Steinmeyer SH, Menon R, Suchodolski JS, Jayaraman A, Alaniz RC. The microbiota-derived metabolite indole decreases mucosal inflammation and injury in a murine model of NSAID enteropathy. Gut Microbes. 0. PMID 27007819 DOI: 10.1080/19490976.2016.1156827  0.324
2016 Oh JK, Kohli N, Zhang Y, Min Y, Jayaraman A, Cisneros-Zevallos L, Akbulut M. Nanoporous aerogel as a bacteria repelling hygienic material for healthcare environment. Nanotechnology. 27: 085705. PMID 26821348 DOI: 10.1088/0957-4484/27/8/085705  0.321
2015 Steinmeyer S, Lee K, Jayaraman A, Alaniz RC. Microbiota Metabolite Regulation of Host Immune Homeostasis: A Mechanistic Missing Link. Current Allergy and Asthma Reports. 15: 524. PMID 26139332 DOI: 10.1007/S11882-015-0524-2  0.331
2014 Sridharan GV, Choi K, Klemashevich C, Wu C, Prabakaran D, Pan LB, Steinmeyer S, Mueller C, Yousofshahi M, Alaniz RC, Lee K, Jayaraman A. Prediction and quantification of bioactive microbiota metabolites in the mouse gut. Nature Communications. 5: 5492. PMID 25411059 DOI: 10.1038/Ncomms6492  0.765
2014 Pasupuleti S, Sule N, Cohn WB, MacKenzie DS, Jayaraman A, Manson MD. Chemotaxis of Escherichia coli to norepinephrine (NE) requires conversion of NE to 3,4-dihydroxymandelic acid. Journal of Bacteriology. 196: 3992-4000. PMID 25182492 DOI: 10.1128/Jb.02065-14  0.351
2014 Wang H, Kim J, Jayaraman A, Han A. Microfluidic geometric metering-based multi-reagent mixture generator for robust live cell screening array. Biomedical Microdevices. 16: 887-96. PMID 25112181 DOI: 10.1007/S10544-014-9893-X  0.301
2014 Choi K, Ghaddar B, Moya C, Shi H, Sridharan GV, Lee K, Jayaraman A. Analysis of transcription factor network underlying 3T3-L1 adipocyte differentiation. Plos One. 9: e100177. PMID 25075860 DOI: 10.1371/Journal.Pone.0100177  0.76
2014 Klemashevich C, Wu C, Howsmon D, Alaniz RC, Lee K, Jayaraman A. Rational identification of diet-derived postbiotics for improving intestinal microbiota function. Current Opinion in Biotechnology. 26: 85-90. PMID 24679263 DOI: 10.1016/J.Copbio.2013.10.006  0.304
2014 Jin UH, Lee SO, Sridharan G, Lee K, Davidson LA, Jayaraman A, Chapkin RS, Alaniz R, Safe S. Microbiome-derived tryptophan metabolites and their aryl hydrocarbon receptor-dependent agonist and antagonist activities. Molecular Pharmacology. 85: 777-88. PMID 24563545 DOI: 10.1124/Mol.113.091165  0.336
2014 Maiti S, Dai W, Alaniz R, Hahn J, Jayaraman A. Mathematical Modeling of Pro- and Anti-Inflammatory Signaling in Macrophages Processes. 3: 1-18. DOI: 10.3390/PR3010001  0.56
2013 Manteiga S, Choi K, Jayaraman A, Lee K. Systems biology of adipose tissue metabolism: regulation of growth, signaling and inflammation. Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 5: 425-47. PMID 23408581 DOI: 10.1002/Wsbm.1213  0.778
2013 Bansal L, Nelson R, Yang E, Jayaraman A, Hahn J. Experimental design of systems involving multiple fluorescent protein reporters Chemical Engineering Science. 101: 191-198. DOI: 10.1016/J.Ces.2013.06.021  0.696
2012 Bansal T, Kim DN, Slininger T, Wood TK, Jayaraman A. Human intestinal epithelial cell-derived molecule(s) increase enterohemorrhagic Escherichia coli virulence. Fems Immunology and Medical Microbiology. 66: 399-410. PMID 23163871 DOI: 10.1111/1574-695X.12004  0.677
2012 Newton BW, Russell WK, Russell DH, Ramaiah SK, Jayaraman A. Proteomic methods for biomarker discovery in a rat model of alcohol steatosis. Methods in Molecular Biology (Clifton, N.J.). 909: 259-77. PMID 22903721 DOI: 10.1007/978-1-61779-959-4_17  0.602
2012 Sheng L, Pu M, Hegde M, Zhang Y, Jayaraman A, Wood TK. Interkingdom adenosine signal reduces Pseudomonas aeruginosa pathogenicity. Microbial Biotechnology. 5: 560-72. PMID 22414222 DOI: 10.1111/J.1751-7915.2012.00338.X  0.726
2012 Kim J, Hegde M, Kim SH, Wood TK, Jayaraman A. A microfluidic device for high throughput bacterial biofilm studies. Lab On a Chip. 12: 1157-63. PMID 22318368 DOI: 10.1039/C2Lc20800H  0.742
2012 Hong SH, Hegde M, Kim J, Wang X, Jayaraman A, Wood TK. Synthetic quorum-sensing circuit to control consortial biofilm formation and dispersal in a microfluidic device. Nature Communications. 3: 613. PMID 22215088 DOI: 10.1038/Ncomms1616  0.785
2012 Bansal T, Alaniz R, Jayaraman A. Role for the bacterial signal indole in promoting epithelial cell barrier function Journal of Epithelial Biology and Pharmacology. 5: 32-38. DOI: 10.2174/1875044301205010032  0.632
2011 Newton BW, Cologna SM, Moya C, Russell DH, Russell WK, Jayaraman A. Proteomic analysis of 3T3-L1 adipocyte mitochondria during differentiation and enlargement. Journal of Proteome Research. 10: 4692-702. PMID 21815628 DOI: 10.1021/Pr200491H  0.614
2011 Moya C, Huang Z, Cheng P, Jayaraman A, Hahn J. Investigation of IL-6 and IL-10 signalling via mathematical modelling. Iet Systems Biology. 5: 15. PMID 21261398 DOI: 10.1049/Iet-Syb.2009.0060  0.711
2011 Vikram A, Jesudhasan PR, Jayaprakasha GK, Pillai SD, Jayaraman A, Patil BS. Citrus flavonoid represses Salmonella pathogenicity island 1 and motility in S. Typhimurium LT2. International Journal of Food Microbiology. 145: 28-36. PMID 21168230 DOI: 10.1016/J.Ijfoodmicro.2010.11.013  0.396
2011 Hegde M, Englert DL, Schrock S, Cohn WB, Vogt C, Wood TK, Manson MD, Jayaraman A. Chemotaxis to the quorum-sensing signal AI-2 requires the Tsr chemoreceptor and the periplasmic LsrB AI-2-binding protein. Journal of Bacteriology. 193: 768-73. PMID 21097621 DOI: 10.1128/Jb.01196-10  0.765
2010 Huang Z, Moya C, Jayaraman A, Hahn J. Using the Tet-On system to develop a procedure for extracting transcription factor activation dynamics. Molecular Biosystems. 6: 1883-9. PMID 20552111 DOI: 10.1039/C003229H  0.701
2010 Englert DL, Manson MD, Jayaraman A. Investigation of bacterial chemotaxis in flow-based microfluidic devices. Nature Protocols. 5: 864-72. PMID 20431532 DOI: 10.1038/Nprot.2010.18  0.772
2010 Kim J, Hegde M, Jayaraman A. Microfluidic co-culture of epithelial cells and bacteria for investigating soluble signal-mediated interactions. Journal of Visualized Experiments : Jove. PMID 20407418 DOI: 10.3791/1749  0.68
2010 Englert DL, Manson MD, Jayaraman A. A microfluidic device for quantifying bacterial chemotaxis in stable concentration gradients. Journal of Visualized Experiments : Jove. PMID 20404797 DOI: 10.3791/1779  0.766
2010 Englert DL, Adase CA, Jayaraman A, Manson MD. Repellent taxis in response to nickel ion requires neither Ni2+ transport nor the periplasmic NikA binding protein. Journal of Bacteriology. 192: 2633-7. PMID 20233931 DOI: 10.1128/Jb.00854-09  0.739
2010 Kim J, Hegde M, Jayaraman A. Co-culture of epithelial cells and bacteria for investigating host-pathogen interactions. Lab On a Chip. 10: 43-50. PMID 20024049 DOI: 10.1039/B911367C  0.69
2010 Bansal T, Alaniz RC, Wood TK, Jayaraman A. The bacterial signal indole increases epithelial-cell tight-junction resistance and attenuates indicators of inflammation. Proceedings of the National Academy of Sciences of the United States of America. 107: 228-33. PMID 19966295 DOI: 10.1073/Pnas.0906112107  0.711
2009 Englert DL, Jayaraman A, Manson MD. Microfluidic techniques for the analysis of bacterial chemotaxis. Methods in Molecular Biology (Clifton, N.J.). 571: 1-23. PMID 19763956 DOI: 10.1007/978-1-60761-198-1_1  0.776
2009 Newton BW, Russell WK, Russell DH, Ramaiah SK, Jayaraman A. Liver proteome analysis in a rodent model of alcoholic steatosis. Journal of Proteome Research. 8: 1663-71. PMID 19714808 DOI: 10.1021/Pr800905W  0.601
2009 Hegde M, Wood TK, Jayaraman A. The neuroendocrine hormone norepinephrine increases Pseudomonas aeruginosa PA14 virulence through the las quorum-sensing pathway. Applied Microbiology and Biotechnology. 84: 763-76. PMID 19517106 DOI: 10.1007/S00253-009-2045-1  0.719
2009 Englert DL, Manson MD, Jayaraman A. Flow-based microfluidic device for quantifying bacterial chemotaxis in stable, competing gradients. Applied and Environmental Microbiology. 75: 4557-64. PMID 19411425 DOI: 10.1128/Aem.02952-08  0.793
2009 Janakiraman V, Englert D, Jayaraman A, Baskaran H. Modeling growth and quorum sensing in biofilms grown in microfluidic chambers. Annals of Biomedical Engineering. 37: 1206-16. PMID 19291402 DOI: 10.1007/S10439-009-9671-8  0.775
2008 Jayaraman A, Wood TK. Bacterial quorum sensing: signals, circuits, and implications for biofilms and disease. Annual Review of Biomedical Engineering. 10: 145-67. PMID 18647113 DOI: 10.1146/Annurev.Bioeng.10.061807.160536  0.565
2008 Huang Z, Senocak F, Jayaraman A, Hahn J. Integrated modeling and experimental approach for determining transcription factor profiles from fluorescent reporter data. Bmc Systems Biology. 2: 64. PMID 18637177 DOI: 10.1186/1752-0509-2-64  0.724
2008 Lee J, Zhang XS, Hegde M, Bentley WE, Jayaraman A, Wood TK. Indole cell signaling occurs primarily at low temperatures in Escherichia coli. The Isme Journal. 2: 1007-23. PMID 18528414 DOI: 10.1038/Ismej.2008.54  0.75
2008 Soni KA, Jesudhasan PR, Cepeda M, Williams B, Hume M, Russell WK, Jayaraman A, Pillai SD. Autoinducer AI-2 is involved in regulating a variety of cellular processes in Salmonella Typhimurium. Foodborne Pathogens and Disease. 5: 147-53. PMID 18361683 DOI: 10.1089/Fpd.2007.0050  0.328
2008 Bansal T, Jesudhasan P, Pillai S, Wood TK, Jayaraman A. Temporal regulation of enterohemorrhagic Escherichia coli virulence mediated by autoinducer-2. Applied Microbiology and Biotechnology. 78: 811-9. PMID 18256823 DOI: 10.1007/S00253-008-1359-8  0.692
2007 Chu Y, Jayaraman A, Hahn J. Parameter sensitivity analysis of IL-6 signalling pathways. Iet Systems Biology. 1: 342-52. PMID 18203580 DOI: 10.1049/Iet-Syb:20060053  0.717
2007 Soni K, Jesudhasan P, Cepeda M, Williams B, Hume M, Russell WK, Jayaraman A, Pillai SD. Proteomic analysis to identify the role of LuxS/AI-2 mediated protein expression in Escherichia coli O157:H7. Foodborne Pathogens and Disease. 4: 463-71. PMID 18041955 DOI: 10.1089/Fpd.2007.0034  0.349
2007 Bansal T, Englert D, Lee J, Hegde M, Wood TK, Jayaraman A. Differential effects of epinephrine, norepinephrine, and indole on Escherichia coli O157:H7 chemotaxis, colonization, and gene expression. Infection and Immunity. 75: 4597-607. PMID 17591798 DOI: 10.1128/Iai.00630-07  0.775
2007 Lee J, Jayaraman A, Wood TK. Indole is an inter-species biofilm signal mediated by SdiA. Bmc Microbiology. 7: 42. PMID 17511876 DOI: 10.1186/1471-2180-7-42  0.663
2007 Lee J, Bansal T, Jayaraman A, Bentley WE, Wood TK. Enterohemorrhagic Escherichia coli biofilms are inhibited by 7-hydroxyindole and stimulated by isatin. Applied and Environmental Microbiology. 73: 4100-9. PMID 17483266 DOI: 10.1128/Aem.00360-07  0.746
2007 Si Y, Palani S, Jayaraman A, Lee K. Effects of forced uncoupling protein 1 expression in 3T3-L1 cells on mitochondrial function and lipid metabolism. Journal of Lipid Research. 48: 826-36. PMID 17202129 DOI: 10.1194/Jlr.M600343-Jlr200  0.303
2007 King KR, Wang S, Irimia D, Jayaraman A, Toner M, Yarmush ML. A high-throughput microfluidic real-time gene expression living cell array. Lab On a Chip. 7: 77-85. PMID 17180208 DOI: 10.1039/B612516F  0.302
2006 Singh A, Jayaraman A, Hahn J. Modeling regulatory mechanisms in IL-6 signal transduction in hepatocytes. Biotechnology and Bioengineering. 95: 850-62. PMID 16752369 DOI: 10.1002/Bit.21026  0.728
2005 Wieder KJ, King KR, Thompson DM, Zia C, Yarmush ML, Jayaraman A. Optimization of reporter cells for expression profiling in a microfluidic device. Biomedical Microdevices. 7: 213-22. PMID 16133809 DOI: 10.1007/S10544-005-3028-3  0.333
2005 Jayaraman A, Yarmush ML, Roth CM. Evaluation of an in vitro model of hepatic inflammatory response by gene expression profiling. Tissue Engineering. 11: 50-63. PMID 15738661 DOI: 10.1089/Ten.2005.11.50  0.333
2004 Thompson DM, King KR, Wieder KJ, Toner M, Yarmush ML, Jayaraman A. Dynamic gene expression profiling using a microfabricated living cell array. Analytical Chemistry. 76: 4098-103. PMID 15253648 DOI: 10.1021/Ac0354241  0.338
2000 Jayaraman A, Yarmush ML, Roth CM. Dynamics of gene expression in rat hepatocytes under stress Metabolic Engineering. 2: 239-251. PMID 11056066 DOI: 10.1006/Mben.2000.0153  0.318
1999 Jayaraman A, Mansfeld FB, Wood TK. Inhibiting sulfate-reducing bacteria in biofilms by expressing the antimicrobial peptides indolicidin and bactenecin Journal of Industrial Microbiology and Biotechnology. 22: 167-175. DOI: 10.1038/Sj.Jim.2900627  0.523
1998 Jayaraman A, Sun AK, Wood TK. Characterization of axenic Pseudomonas fragi and Escherichia coli biofilms that inhibit corrosion of SAE 1018 steel. Journal of Applied Microbiology. 84: 485-92. PMID 9633647 DOI: 10.1046/J.1365-2672.1998.00359.X  0.538
1997 Jayaraman A, Cheng ET, Earthman JC, Wood TK. Axenic aerobic biofilms inhibit corrosion of SAE 1018 steel through oxygen depletion Applied Microbiology and Biotechnology. 48: 11-17. PMID 9274042 DOI: 10.1007/S002530051007  0.488
1997 Jayaraman A, Cheng ET, Earthman JC, Wood TK. Importance of biofilm formation for corrosion inhibition of SAE 1018 steel by axenic aerobic biofilms Journal of Industrial Microbiology and Biotechnology. 18: 396-401. PMID 9248069 DOI: 10.1038/Sj.Jim.2900396  0.51
1997 Jayaraman A, Earthman JC, Wood TK. Corrosion inhibition by aerobic biofilms on SAE 1018 steel Applied Microbiology and Biotechnology. 47: 62-68. DOI: 10.1007/S002530050889  0.511
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