Lesa J. Beamer - Related publications

Affiliations: 
University of Missouri - Columbia, Columbia, MO, United States 
Area:
Biochemistry
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Maryam A, Khalid RR, Vedithi SC, Ece A, Çınaroğlu SS, Siddiqi AR, Blundell TL. Exploring the structural basis of conformational heterogeneity and autoinhibition of human cGMP-specific protein kinase Iα through computational modelling and molecular dynamics simulations. Computational and Structural Biotechnology Journal. 18: 1625-1638. PMID 32670503 DOI: 10.1016/j.csbj.2020.06.016   
2020 Manne K, Chattopadhyay D, Agarwal V, Blom AM, Khare B, Chakravarthy S, Chang C, Ton-That H, Narayana SVL. Novel structure of the N-terminal helical domain of BibA, a group B streptococcus immunogenic bacterial adhesin. Acta Crystallographica. Section D, Structural Biology. 76: 759-770. PMID 32744258 DOI: 10.1107/S2059798320008116   
2020 Kumar R, Maksudov F, Kononova O, Marx KA, Barsegov V, Singh BR. Botulinum Endopeptidase: SAXS Experiments and MD Simulations Reveal Extended Solution Structures That Account for Its Biochemical Properties. The Journal of Physical Chemistry. B. PMID 32543194 DOI: 10.1021/acs.jpcb.0c02817   
2020 Piepoli S, Alt AO, Atilgan C, Mancini EJ, Erman B. Structural analysis of the PATZ1 BTB domain homodimer. Acta Crystallographica. Section D, Structural Biology. 76: 581-593. PMID 32496219 DOI: 10.1107/S2059798320005355   
2020 Potter ZE, Lau HT, Chakraborty S, Fang L, Guttman M, Ong SE, Fowler DM, Maly DJ. Parallel Chemoselective Profiling for Mapping Protein Structure. Cell Chemical Biology. PMID 32649906 DOI: 10.1016/j.chembiol.2020.06.014   
2020 Visconti L, Toto A, Jarvis JA, Troilo F, Malagrinò F, De Simone A, Gianni S. Demonstration of Binding Induced Structural Plasticity in a SH2 Domain. Frontiers in Molecular Biosciences. 7: 89. PMID 32528972 DOI: 10.3389/fmolb.2020.00089   
2020 Tomiczek B, Delewski W, Nierzwicki L, Stolarska M, Grochowina I, Schilke B, Dutkiewicz R, Uzarska MA, Ciesielski SJ, Czub J, Craig EA, Marszalek J. Two-step mechanism of J-domain action in driving Hsp70 function. Plos Computational Biology. 16: e1007913. PMID 32479549 DOI: 10.1371/journal.pcbi.1007913   
2020 Panchamia B, Raimalani V, Prashar V, Kumar M, Ratna Prabha C. Structural and Functional Characterisation of the Domains of Ubiquitin-Activating Enzyme (E1) of Saccharomyces cerevisiae. Cell Biochemistry and Biophysics. PMID 32583128 DOI: 10.1007/s12013-020-00924-3   
2020 Campbell AC, Stiers KM, Martin Del Campo JS, Mehra-Chaudhary R, Sobrado P, Tanner JJ. Trapping conformational states of a flavin-dependent N-monooxygenase in crystallo reveals protein and flavin dynamics. The Journal of Biological Chemistry. PMID 32723870 DOI: 10.1074/jbc.RA120.014750   
2020 Chang TH, Hsieh FL, Smallwood PM, Gabelli SB, Nathans J. Structure of the RECK CC domain, an evolutionary anomaly. Proceedings of the National Academy of Sciences of the United States of America. PMID 32541044 DOI: 10.1073/pnas.2006332117   
2020 Zhu M, Ou D, Khan MH, Zhao S, Zhu Z, Niu L. Structural insights into the formation of oligomeric state by a type I Hsp40 chaperone. Biochimie. PMID 32621942 DOI: 10.1016/j.biochi.2020.06.009   
2020 Kaynak BT, Bahar I, Doruker P. Essential site scanning analysis: A new approach for detecting sites that modulate the dispersion of protein global motions. Computational and Structural Biotechnology Journal. 18: 1577-1586. PMID 32637054 DOI: 10.1016/j.csbj.2020.06.020   
2020 Xu B, Liu D, Wang Z, Tian R, Zuo Y. Multi-substrate selectivity based on key loops and non-homologous domains: new insight into ALKBH family. Cellular and Molecular Life Sciences : Cmls. PMID 32642789 DOI: 10.1007/s00018-020-03594-9   
2020 Abideen ZU, Ahmad A, Usman M, Majaz S, Ali W, Noreen S, Mahmood T, Nouroz F. Dynamics and conformational propensities of staphylococcal CntA. Journal of Biomolecular Structure & Dynamics. 1-13. PMID 32573341 DOI: 10.1080/07391102.2020.1782263   
2020 Le CA, Harvey DS, Aller SG. Structural definition of polyspecific compensatory ligand recognition by P-glycoprotein. Iucrj. 7: 663-672. PMID 32695413 DOI: 10.1107/S2052252520005709   
2020 Tamirat MZ, Kurppa KJ, Elenius K, Johnson MS. Deciphering the Structural Effects of Activating EGFR Somatic Mutations with Molecular Dynamics Simulation. Journal of Visualized Experiments : Jove. PMID 32510498 DOI: 10.3791/61125   
2020 Nebl S, Alwan WS, Williams ML, Sharma G, Taylor A, Doak BC, Wilde KL, McMahon RM, Halili MA, Martin JL, Capuano B, Fenwick RB, Mohanty B, Scanlon MJ. NMR fragment screening reveals a novel small molecule binding site near the catalytic surface of the disulfide-dithiol oxidoreductase enzyme DsbA from Burkholderia pseudomallei. Journal of Biomolecular Nmr. PMID 32761504 DOI: 10.1007/s10858-020-00339-5   
2020 Liu Z, Wang C, Yang J, Chen Y, Zhou B, Abbott DW, Xiao TS. Caspase-1 Engages Full-Length Gasdermin D through Two Distinct Interfaces That Mediate Caspase Recruitment and Substrate Cleavage. Immunity. PMID 32553275 DOI: 10.1016/j.immuni.2020.06.007   
2020 Chan-Yao-Chong M, Marsin S, Quevillon-Cheruel S, Durand D, Ha-Duong T. Structural ensemble and biological activity of DciA intrinsically disordered region. Journal of Structural Biology. 107573. PMID 32679070 DOI: 10.1016/j.jsb.2020.107573   
2020 Yamamoto F, Morisaka H, Ueda M, Watanabe K. Molecular characterization of a prolyl endopeptidase from a feather-degrading thermophile Meiothermus ruber H328. Journal of Biochemistry. PMID 32597969 DOI: 10.1093/jb/mvaa069   
2020 Dutoit R, Brandt N, Van Gompel T, Van Elder D, Van Dyck J, Sobott F, Droogmans L. M42 aminopeptidase catalytic site: the structural and functional role of a strictly conserved aspartate residue. Proteins. PMID 32673419 DOI: 10.1002/prot.25982   
2020 Hosford CJ, Adams MC, Niu Y, Chappie JS. The N-terminal domain of Staphylothermus marinus McrB shares structural homology with PUA-like RNA binding proteins Journal of Structural Biology. PMID 32652237 DOI: 10.1016/j.jsb.2020.107572   
2020 Lüthje S, Ramanathan K. In Silico Analysis of Class III Peroxidases: Hypothetical Structure, Ligand Binding Sites, Posttranslational Modifications, and Interaction with Substrates. Methods in Molecular Biology (Clifton, N.J.). 2139: 325-339. PMID 32462597 DOI: 10.1007/978-1-0716-0528-8_24   
2020 Min K, Yoon HJ, Park JY, Baidya M, Dwivedi-Agnihotri H, Maharana J, Chaturvedi M, Chung KY, Shukla AK, Lee HH. Crystal Structure of β-Arrestin 2 in Complex with CXCR7 Phosphopeptide. Structure (London, England : 1993). PMID 32579945 DOI: 10.1016/j.str.2020.06.002   
2020 Lou JW, Mazhab-Jafari MT. Steric occlusion regulates proximal interactions of acyl carrier protein domain in fungal fatty acid synthase. Communications Biology. 3: 274. PMID 32471977 DOI: 10.1038/s42003-020-0997-y   
2020 Kilgore H, Latham AP, Ressler VT, Zhang B, Raines RT. Structure and Dynamics of -Glycosylated Human Ribonuclease 1. Biochemistry. PMID 32544330 DOI: 10.1021/acs.biochem.0c00191   
2020 Nutho B, Pengthaisong S, Tankrathok A, Lee VS, Ketudat Cairns JR, Rungrotmongkol T, Hannongbua S. Structural Basis of Specific Glucoimidazole and Mannoimidazole Binding by Os3BGlu7. Biomolecules. 10. PMID 32549280 DOI: 10.3390/biom10060907   
2020 Sheetz JB, Mathea S, Karvonen H, Malhotra K, Chatterjee D, Niininen W, Perttilä R, Preuss F, Suresh K, Stayrook SE, Tsutsui Y, Radhakrishnan R, Ungureanu D, Knapp S, Lemmon MA. Structural Insights into Pseudokinase Domains of Receptor Tyrosine Kinases. Molecular Cell. PMID 32619402 DOI: 10.1016/j.molcel.2020.06.018   
2020 Geiger JH, Ghanbarpour A, Santos EM, Pinger CH, Assar Z, Nasr SH, Vasileiou C, Spence D, Borhan BH. Human Cellular Retinol Binding Protein II Forms a Domain-Swapped Trimer Representing a Novel Fold and a New Template for Protein Engineering. Chembiochem : a European Journal of Chemical Biology. PMID 32608180 DOI: 10.1002/cbic.202000405   
2020 Vignesh R, Aradhyam GK. Change in domain cooperativity drives function of calnuc. Biochemistry. PMID 32543177 DOI: 10.1021/acs.biochem.0c00207   
2020 Xue J, Xie T, Zeng W, Jiang Y, Bai XC. Cryo-EM structures of human ZnT8 in both outward- and inward-facing conformations. Elife. 9. PMID 32723473 DOI: 10.7554/eLife.58823   
2020 Ha Y, Jang M, Lee S, Lee JY, Lee WC, Bae S, Kang J, Han M, Kim Y. Identification of inhibitor binding hotspots in Acinetobacter baumannii β-ketoacyl acyl carrier protein synthase III using molecular dynamics simulation. Journal of Molecular Graphics & Modelling. 100: 107669. PMID 32659632 DOI: 10.1016/j.jmgm.2020.107669   
2020 Stelzl LL, Mavridou DAI, Saridakis E, Gonzalez D, Baldwin AJ, Ferguson SJ, Sansom MS, Redfield C. Local frustration determines loop opening during the catalytic cycle of an oxidoreductase. Elife. 9. PMID 32568066 DOI: 10.7554/eLife.54661   
2020 Lee BG, Merkel F, Allegretti M, Hassler M, Cawood C, Lecomte L, O'Reilly FJ, Sinn LR, Gutierrez-Escribano P, Kschonsak M, Bravo S, Nakane T, Rappsilber J, Aragon L, Beck M, et al. Cryo-EM structures of holo condensin reveal a subunit flip-flop mechanism. Nature Structural & Molecular Biology. PMID 32661420 DOI: 10.1038/s41594-020-0457-x   
2020 Butt BG, Scourfield EJ, Graham SC. Non-native fold of the putative VPS39 zinc finger domain. Wellcome Open Research. 5: 154. PMID 32724865 DOI: 10.12688/wellcomeopenres.16078.1   
2020 Murphy P, Xu Y, Rouse SL, Jaffray EG, Plechanovová A, Matthews SJ, Carlos Penedo J, Hay RT. Functional 3D architecture in an intrinsically disordered E3 ligase domain facilitates ubiquitin transfer. Nature Communications. 11: 3807. PMID 32733036 DOI: 10.1038/s41467-020-17647-x   
2020 Medina E, Villalobos P, Hamilton GL, Komives EA, Sanabria H, Ramírez-Sarmiento CA, Babul J. Intrinsically disordered regions of the DNA-binding domain of human FoxP1 facilitate domain swapping. Journal of Molecular Biology. PMID 32735805 DOI: 10.1016/j.jmb.2020.07.017   
2020 Marasco M, Carlomagno T. Specificity and regulation of phosphotyrosine signaling through SH2 domains. Journal of Structural Biology: X. 4: 100026. PMID 32647828 DOI: 10.1016/j.yjsbx.2020.100026   
2020 Pinter TBJ, Manickas EC, Koebke KJ, Tolbert AE, Deb A, Penner-Hahn JE, Pecoraro VL. Making or breaking metal-dependent catalytic activity: The role of stammers in designed three-stranded coiled coils. Angewandte Chemie (International Ed. in English). PMID 32748510 DOI: 10.1002/anie.202008356   
2020 Bhat AS, Kinch LN, Grishin NV. β-Strand-mediated interactions of protein domains. Proteins. PMID 32543729 DOI: 10.1002/prot.25970   
2020 Ye Q, West AMV, Silletti S, Corbett KD. Architecture and self-assembly of the SARS-CoV-2 nucleocapsid protein. Protein Science : a Publication of the Protein Society. PMID 32654247 DOI: 10.1002/pro.3909   
2020 Gaziova I, Moncrief T, Christian CJ, Villarreal M, Powell S, Lee H, Qadota H, White MA, Benian GM, Oberhauser AF. Mutational Analysis of the Structure and Function of the Chaperoning Domain of UNC-45B. Biophysical Journal. PMID 32755562 DOI: 10.1016/j.bpj.2020.07.012   
2020 Lara J, Diacovich L, Trajtenberg F, Larrieux N, Malchiodi EL, Fernández MM, Gago G, Gramajo H, Buschiazzo A. Mycobacterium tuberculosis FasR senses long fatty acyl-CoA through a tunnel and a hydrophobic transmission spine. Nature Communications. 11: 3703. PMID 32710080 DOI: 10.1038/s41467-020-17504-x   
2020 Na I, Choi S, Son SH, Uversky VN, Kim CG. Drug Discovery Targeting the Disorder-To-Order Transition Regions through the Conformational Diversity Mimicking and Statistical Analysis. International Journal of Molecular Sciences. 21. PMID 32722024 DOI: 10.3390/ijms21155248   
2020 Bahun M, Hartman K, Poklar Ulrih N. Periplasmic production of pernisine in Escherichia coli and determinants for its high thermostability. Applied Microbiology and Biotechnology. PMID 32734388 DOI: 10.1007/s00253-020-10791-w   
2020 Zimanyi CM, Guo M, Mahmood A, Hendrickson WA, Hirsh D, Cheung J. Structure of the Regulatory Cytosolic Domain of a Eukaryotic Potassium-Chloride Cotransporter. Structure (London, England : 1993). PMID 32679039 DOI: 10.1016/j.str.2020.06.009   
2020 Arora Verasztó H, Logotheti M, Albrecht R, Leitner A, Zhu H, Hartmann MD. Architecture and functional dynamics of the pentafunctional AROM complex. Nature Chemical Biology. PMID 32632294 DOI: 10.1038/s41589-020-0587-9   
2020 Hao DL, Yang SY, Liu SX, Zhou JY, Huang YN, Véry AA, Sentenac H, Su YH. Functional Characterization of the Ammonium Transporter AtAMT1;3 With the Emphasis on Structural Determinants of Substrate Binding and Permeation Properties. Frontiers in Plant Science. 11: 571. PMID 32528489 DOI: 10.3389/fpls.2020.00571   
2020 Thakur A, Sharma K, Jaiswal K, Goyal A. Structure and dynamics analysis of a family 43 glycoside hydrolase α-L-arabinofuranosidase (PsGH43_12) from Pseudopedobacter saltans by computational modeling and small-angle X-ray scattering. International Journal of Biological Macromolecules. 163: 582-592. PMID 32640320 DOI: 10.1016/j.ijbiomac.2020.07.007   
2020 Davies JR, Britton A, Liu SM, Acharya KR. High resolution crystal structures of the botulinum neurotoxin binding domains from subtypes A5 and A6. Febs Open Bio. PMID 32654405 DOI: 10.1002/2211-5463.12931