Dev P. Arya - Publications

Chemistry Clemson University, Clemson, SC, United States 
Analytical Chemistry, Physical Chemistry

47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Ranjan N, Andreasen KF, Arora Y, Xue L, Arya DP. Surface Dependent Dual Recognition of a G-quadruplex DNA With Neomycin-Intercalator Conjugates. Frontiers in Chemistry. 8: 60. PMID 32117884 DOI: 10.3389/fchem.2020.00060  0.4
2016 Jin Y, Watkins D, Degtyareva NN, Green KD, Spano MN, Garneau-Tsodikova S, Arya DP. Arginine-linked neomycin B dimers: synthesis, rRNA binding, and resistance enzyme activity. Medchemcomm. 7: 164-169. PMID 26811742 DOI: 10.1039/C5MD00427F  1
2016 Kumar S, Ranjan N, Kellish P, Gong C, Watkins D, Arya DP. Multivalency in the recognition and antagonism of a HIV TAR RNA-TAT assembly using an aminoglycoside benzimidazole scaffold. Organic & Biomolecular Chemistry. 14: 2052-6. PMID 26765486 DOI: 10.1039/c5ob02016f  0.56
2015 Watkins D, Jiang L, Nahar S, Maiti S, Arya DP. A pH Sensitive High-Throughput Assay for miRNA Binding of a Peptide-Aminoglycoside (PA) Library. Plos One. 10: e0144251. PMID 26656788 DOI: 10.1371/journal.pone.0144251  1
2015 Kumar S, Spano MN, Arya DP. Influence of linker length in shape recognition of B(∗) DNA by dimeric aminoglycosides. Bioorganic & Medicinal Chemistry. 23: 3105-9. PMID 26025072 DOI: 10.1016/j.bmc.2015.04.082  0.56
2015 Watkins D, Kumar S, Green KD, Arya DP, Garneau-Tsodikova S. Influence of Linker Length and Composition on Enzymatic Activity and Ribosomal Binding of Neomycin Dimers. Antimicrobial Agents and Chemotherapy. 59: 3899-905. PMID 25896697 DOI: 10.1128/AAC.00861-15  1
2015 Jiang L, Watkins D, Jin Y, Gong C, King A, Washington AZ, Green KD, Garneau-Tsodikova S, Oyelere AK, Arya DP. Rapid synthesis, RNA binding, and antibacterial screening of a peptidic-aminosugar (PA) library. Acs Chemical Biology. 10: 1278-89. PMID 25706406 DOI: 10.1021/cb5010367  1
2015 Nahar S, Ranjan N, Ray A, Arya DP, Maiti S. Potent inhibition of miR-27a by neomycin-bisbenzimidazole conjugates Chemical Science. 6: 5837-5846. DOI: 10.1039/c5sc01969a  1
2014 Kellish PC, Kumar S, Mack TS, Spano MN, Hennig M, Arya DP. Multivalent Amino Sugars to Recognize Different TAR RNA Conformations. Medchemcomm. 5: 1235-1246. PMID 27076899 DOI: 10.1039/C4MD00165F  0.56
2014 Woo CM, Ranjan N, Arya DP, Herzon SB. Analysis of diazofluorene DNA binding and damaging activity: DNA cleavage by a synthetic monomeric diazofluorene. Angewandte Chemie (International Ed. in English). 53: 9325-8. PMID 25044348 DOI: 10.1002/anie.201404137  1
2014 Kumar S, Newby Spano M, Arya DP. Shape readout of AT-rich DNA by carbohydrates. Biopolymers. 101: 720-32. PMID 24281844 DOI: 10.1002/bip.22448  0.56
2013 Watkins D, Ranjan N, Kumar S, Gong C, Arya DP. An assay for human telomeric G-quadruplex DNA binding drugs. Bioorganic & Medicinal Chemistry Letters. 23: 6695-9. PMID 24246738 DOI: 10.1016/j.bmcl.2013.10.030  0.56
2013 Ranjan N, Kumar S, Watkins D, Wang D, Appella DH, Arya DP. Recognition of HIV-TAR RNA using neomycin-benzimidazole conjugates. Bioorganic & Medicinal Chemistry Letters. 23: 5689-93. PMID 24012122 DOI: 10.1016/j.bmcl.2013.08.014  1
2013 King A, Watkins D, Kumar S, Ranjan N, Gong C, Whitlock J, Arya DP. Characterization of ribosomal binding and antibacterial activities using two orthogonal high-throughput screens. Antimicrobial Agents and Chemotherapy. 57: 4717-26. PMID 23856777 DOI: 10.1128/AAC.00671-13  0.56
2013 Ranjan N, Davis E, Xue L, Arya DP. Dual recognition of the human telomeric G-quadruplex by a neomycin-anthraquinone conjugate. Chemical Communications (Cambridge, England). 49: 5796-8. PMID 23698792 DOI: 10.1039/c3cc42721h  0.4
2013 Watkins D, Norris FA, Kumar S, Arya DP. A fluorescence-based screen for ribosome binding antibiotics. Analytical Biochemistry. 434: 300-7. PMID 23262284 DOI: 10.1016/j.ab.2012.12.003  0.56
2012 Charles I, Davis E, Arya DP. Efficient stabilization of phosphodiester (PO), phosphorothioate (PS), and 2'-O-methoxy (2'-OMe) DNA·RNA hybrid duplexes by amino sugars. Biochemistry. 51: 5496-505. PMID 22639785 DOI: 10.1021/bi3004507  0.44
2012 Kumar S, Kellish P, Robinson WE, Wang D, Appella DH, Arya DP. Click dimers to target HIV TAR RNA conformation. Biochemistry. 51: 2331-47. PMID 22339203 DOI: 10.1021/bi201657k  0.56
2012 Hamilton PL, Arya DP. Natural product DNA major groove binders. Natural Product Reports. 29: 134-43. PMID 22183179 DOI: 10.1039/c1np00054c  1
2011 Xi H, Davis E, Ranjan N, Xue L, Hyde-Volpe D, Arya DP. Thermodynamics of nucleic acid "shape readout" by an aminosugar. Biochemistry. 50: 9088-113. PMID 21863895 DOI: 10.1021/bi201077h  1
2011 Kumar S, Arya DP. Recognition of HIV TAR RNA by triazole linked neomycin dimers. Bioorganic & Medicinal Chemistry Letters. 21: 4788-92. PMID 21757341 DOI: 10.1016/j.bmcl.2011.06.058  0.56
2011 Kumar S, Xue L, Arya DP. Neomycin-neomycin dimer: an all-carbohydrate scaffold with high affinity for AT-rich DNA duplexes. Journal of the American Chemical Society. 133: 7361-75. PMID 21524066 DOI: 10.1021/ja108118v  0.56
2011 Xue L, Ranjan N, Arya DP. Synthesis and spectroscopic studies of the aminoglycoside (neomycin)--perylene conjugate binding to human telomeric DNA. Biochemistry. 50: 2838-49. PMID 21329360 DOI: 10.1021/bi1017304  0.4
2010 Ranjan N, Andreasen KF, Kumar S, Hyde-Volpe D, Arya DP. Aminoglycoside binding to Oxytricha nova telomeric DNA. Biochemistry. 49: 9891-903. PMID 20886815 DOI: 10.1021/bi101517e  0.56
2010 Xue L, Xi H, Kumar S, Gray D, Davis E, Hamilton P, Skriba M, Arya DP. Probing the recognition surface of a DNA triplex: binding studies with intercalator-neomycin conjugates. Biochemistry. 49: 5540-52. PMID 20499878 DOI: 10.1021/bi100071j  1
2010 Xi H, Kumar S, Dosen-Micovic L, Arya DP. Calorimetric and spectroscopic studies of aminoglycoside binding to AT-rich DNA triple helices. Biochimie. 92: 514-29. PMID 20167243 DOI: 10.1016/j.biochi.2010.02.004  1
2009 Xi H, Gray D, Kumar S, Arya DP. Molecular recognition of single-stranded RNA: neomycin binding to poly(A). Febs Letters. 583: 2269-75. PMID 19520078 DOI: 10.1016/j.febslet.2009.06.007  1
2008 Shaw NN, Xi H, Arya DP. Molecular recognition of a DNA:RNA hybrid: sub-nanomolar binding by a neomycin-methidium conjugate. Bioorganic & Medicinal Chemistry Letters. 18: 4142-5. PMID 18573660 DOI: 10.1016/j.bmcl.2008.05.090  1
2008 Shaw NN, Arya DP. Recognition of the unique structure of DNA:RNA hybrids. Biochimie. 90: 1026-39. PMID 18486626 DOI: 10.1016/j.biochi.2008.04.011  1
2007 Charles I, Xi H, Arya DP. Sequence-specific targeting of RNA with an oligonucleotide-neomycin conjugate. Bioconjugate Chemistry. 18: 160-9. PMID 17226969 DOI: 10.1021/bc060249r  1
2007 Arya DP, Shaw N, Xi H. Novel Targets for Aminoglycosides Aminoglycoside Antibiotics: From Chemical Biology to Drug Discovery. 289-314. DOI: 10.1002/9780470149676.ch11  1
2005 Xi H, Arya DP. Recognition of triple helical nucleic acids by aminoglycosides. Current Medicinal Chemistry. Anti-Cancer Agents. 5: 327-38. PMID 16101485 DOI: 10.2174/1568011054222328  1
2005 Napoli S, Carbone GM, Catapano CV, Shaw N, Arya DP. Neomycin improves cationic lipid-mediated transfection of DNA in human cells. Bioorganic & Medicinal Chemistry Letters. 15: 3467-9. PMID 15950473 DOI: 10.1016/j.bmcl.2005.04.038  0.56
2004 Arya DP, Coffee RL, Xue L. From triplex to B-form duplex stabilization: reversal of target selectivity by aminoglycoside dimers. Bioorganic & Medicinal Chemistry Letters. 14: 4643-6. PMID 15324880 DOI: 10.1016/j.bmcl.2004.07.002  0.4
2003 Arya DP, Xue L, Willis B. Aminoglycoside (neomycin) preference is for A-form nucleic acids, not just RNA: results from a competition dialysis study. Journal of the American Chemical Society. 125: 10148-9. PMID 12926918 DOI: 10.1021/ja035117c  0.4
2003 Davis WC, Venzie JL, Willis B, Coffee RL, Arya DP, Marcus RK. Particle beam glow discharge mass spectrometry: spectral characteristics of nucleobases. Rapid Communications in Mass Spectrometry : Rcm. 17: 1749-58. PMID 12872280 DOI: 10.1002/rcm.1117  1
2003 Arya DP, Xue L, Tennant P. Combining the best in triplex recognition: synthesis and nucleic acid binding of a BQQ-neomycin conjugate. Journal of the American Chemical Society. 125: 8070-1. PMID 12837054 DOI: 10.1021/ja034241t  1
2003 Arya DP, Micovic L, Charles I, Coffee RL, Willis B, Xue L. Neomycin binding to Watson-Hoogsteen (W-H) DNA triplex groove: a model. Journal of the American Chemical Society. 125: 3733-44. PMID 12656603 DOI: 10.1021/ja027765m  0.44
2002 Xue L, Charles I, Arya DP. Pyrene-neomycin conjugate: dual recognition of a DNA triple helix. Chemical Communications (Cambridge, England). 70-1. PMID 12120315  0.44
2002 Charles I, Xue L, Arya DP. Synthesis of aminoglycoside-DNA conjugates. Bioorganic & Medicinal Chemistry Letters. 12: 1259-62. PMID 11965366  0.44
2001 Arya DP, Coffee RL, Charles I. Neomycin-induced hybrid triplex formation. Journal of the American Chemical Society. 123: 11093-4. PMID 11686727  0.44
2001 Arya DP, Coffee RL, Willis B, Abramovitch AI. Aminoglycoside-nucleic acid interactions: remarkable stabilization of DNA and RNA triple helices by neomycin. Journal of the American Chemical Society. 123: 5385-95. PMID 11389616 DOI: 10.1021/ja003052x  1
2000 Arya DP, Bruice TC. Solid-phase synthesis of oligomeric deoxynucleic-thiourea (DNT) and deoxynucleic S-methylthiourea (DNmt): a neutral/polycationic analogue of DNA. Bioorganic & Medicinal Chemistry Letters. 10: 691-3. PMID 10782665 DOI: 10.1016/S0960-894X(00)00085-8  1
1999 Arya DP, Bruice TC. Triple-helix formation of DNA oligomers with methylthiourea-linked nucleosides (DNmt): a kinetic and thermodynamic analysis. Proceedings of the National Academy of Sciences of the United States of America. 96: 4384-9. PMID 10200271 DOI: 10.1073/pnas.96.8.4384  1
1999 Arya DP, Bruice TC. Fidelity of deoxynucleic S-methythiourea (DNmt) binding to DNA oligomers: Influence of C mismatches Journal of the American Chemical Society. 121: 10680-10684. DOI: 10.1021/ja992871i  1
1998 Arya DP, Bruice TC. Positively charged deoxynucleic methylthioureas: Synthesis and binding properties of pentameric thymidyl methylthiourea Journal of the American Chemical Society. 120: 12419-12427. DOI: 10.1021/ja9829416  1
1998 Arya DP, Bruice TC. Replacement of the negative phosphodiester linkages of DNA by positive S-methylthiourea tinkers: A novel approach to putative antisense agents Journal of the American Chemical Society. 120: 6619-6620. DOI: 10.1021/ja980629q  1
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