Dev P. Arya - Publications

Affiliations: 
Chemistry Clemson University, Clemson, SC, United States 
Area:
Analytical Chemistry, Physical Chemistry

83 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Story S, Bhaduri S, Ganguly S, Dakarapu R, Wicks SL, Bhadra J, Kwange S, Arya DP. Understanding Antisense Oligonucleotide Efficiency in Inhibiting Prokaryotic Gene Expression. Acs Infectious Diseases. PMID 38385613 DOI: 10.1021/acsinfecdis.3c00645  0.301
2023 Ranjan N, Arya DP. Parallel G-quadruplex recognition by neomycin. Frontiers in Chemistry. 11: 1232514. PMID 37671393 DOI: 10.3389/fchem.2023.1232514  0.718
2023 Conner AN, Fuller MT, Kellish PC, Arya DP. Thermodynamics of d(GGGGCCCC) Binding to Neomycin-Class Aminoglycosides. Biochemistry. PMID 37172221 DOI: 10.1021/acs.biochem.3c00049  0.393
2022 Ghosh A, Ranjan N, Jiang L, Ansari AH, Degyatoreva N, Ahluwalia S, Arya DP, Maiti S. Fine-tuning miR-21 expression and inhibition of EMT in breast cancer cells using aromatic-neomycin derivatives. Molecular Therapy. Nucleic Acids. 27: 685-698. PMID 35070496 DOI: 10.1016/j.omtn.2021.12.027  0.628
2020 Ranjan N, Andreasen KF, Arora Y, Xue L, Arya DP. Surface Dependent Dual Recognition of a G-quadruplex DNA With Neomycin-Intercalator Conjugates. Frontiers in Chemistry. 8: 60. PMID 32117884 DOI: 10.3389/Fchem.2020.00060  0.759
2019 Chamberlin J, Story S, Ranjan N, Chesser G, Arya DP. Gram-negative synergy and mechanism of action of alkynyl bisbenzimidazoles. Scientific Reports. 9: 14171. PMID 31578425 DOI: 10.1038/S41598-019-48898-4  0.686
2019 Ranjan N, Arya DP. A fluorescent aminosugar to rapidly screen and study RNA binders. Methods in Enzymology. 623: 291-314. PMID 31239051 DOI: 10.1016/Bs.Mie.2019.05.027  0.756
2019 Watkins D, Maiti K, Arya DP. Aminoglycoside Functionalization as a Tool for Targeting Nucleic Acids. Methods in Molecular Biology (Clifton, N.J.). 1973: 147-162. PMID 31016700 DOI: 10.1007/978-1-4939-9216-4_9  0.362
2018 Story S, Skriba MJ, Maiti K, Nihar Ranjan, Degtyareva NN, Green KD, Khodaverdian V, Oyelere AK, Garneau-Tsodikova S, Arya DP. Synthesis, antimicrobial activity, attenuation of aminoglycoside resistance in MRSA, and ribosomal A-site binding of pyrene-neomycin conjugates. European Journal of Medicinal Chemistry. 163: 381-393. PMID 30530174 DOI: 10.1016/J.Ejmech.2018.11.022  0.362
2018 Ghosh A, Degyatoreva N, Kukielski C, Story S, Bhaduri S, Maiti K, Nahar S, Ray A, Arya DP, Maiti S. Targeting miRNA by tunable small molecule binders: peptidic aminosugar mediated interference in miR-21 biogenesis reverts epithelial to mesenchymal transition. Medchemcomm. 9: 1147-1154. PMID 30109002 DOI: 10.1039/C8Md00092A  0.308
2018 Bhaduri S, Ranjan N, Arya DP. An overview of recent advances in duplex DNA recognition by small molecules. Beilstein Journal of Organic Chemistry. 14: 1051-1086. PMID 29977379 DOI: 10.3762/Bjoc.14.93  0.751
2018 Kukielski C, Maiti K, Bhaduri S, Story S, Arya DP. Rapid solid-phase syntheses of a peptidic-aminoglycoside library Tetrahedron. 74: 4418-4428. DOI: 10.1016/J.Tet.2018.07.012  0.313
2017 Kamphan A, Gong C, Maiti K, Sur S, Traiphol R, Arya DP. Utilization of chromic polydiacetylene assemblies as a platform to probe specific binding between drug and RNA. Rsc Advances. 7: 41435-41443. PMID 29276583 DOI: 10.1039/C7Ra07178G  0.452
2017 Thamban Chandrika N, Shrestha SK, Ranjan N, Sharma A, Arya DP, Garneau-Tsodikova S. New Application of Neomycin B-Bisbenzimidazole Hybrids as Antifungal Agents. Acs Infectious Diseases. PMID 29227087 DOI: 10.1021/Acsinfecdis.7B00254  0.672
2017 Ranjan N, Kellish P, King A, Arya DP. Impact of Linker Length and Composition on Fragment Binding and Cell Permeation: Story of a Bisbenzimidazole Dye Fragment. Biochemistry. PMID 29131946 DOI: 10.1021/Acs.Biochem.7B00929  0.742
2017 Gómez Ramos LM, Degtyareva NN, Kovacs NA, Holguin SY, Jiang L, Petrov AS, Biesiada M, Hu MY, Purzycka KJ, Arya DP, Williams LD. Eukaryotic Ribosomal Expansion Segments as Antimicrobial Targets. Biochemistry. PMID 28895721 DOI: 10.1021/Acs.Biochem.7B00703  0.442
2017 Ranjan N, Story S, Fulcrand G, Leng F, Ahmad M, King A, Sur S, Wang W, Tse-Dinh YC, Arya DP. Selective Inhibition of E. coli RNA and DNA Topoisomerase I by Hoechst 33258 Derived Mono and Bisbenzimidazoles. Journal of Medicinal Chemistry. PMID 28513176 DOI: 10.1021/Acs.Jmedchem.7B00191  0.753
2017 Degtyareva NN, Gong C, Story S, Levinson N, Oyelere AK, Green KD, Garneau-Tsodikova S, Arya DP. Antimicrobial Activity, AME Resistance and Translation Inhibition Studies of Anthraquinone-Neomycin Conjugates. Acs Infectious Diseases. PMID 28103015 DOI: 10.1021/Acsinfecdis.6B00176  0.353
2016 Watkins D, Gong C, Kellish P, Arya DP. Probing A-form DNA: A fluorescent aminosugar probe and dual recognition by anthraquinone-neomycin conjugates. Bioorganic & Medicinal Chemistry. PMID 28129992 DOI: 10.1016/J.Bmc.2016.11.003  0.527
2016 Ranjan N, Arya DP. Linker dependent intercalation of bisbenzimidazole-aminosugars in an RNA duplex; selectivity in RNA vs. DNA binding. Bioorganic & Medicinal Chemistry Letters. PMID 27884695 DOI: 10.1016/J.Bmcl.2016.10.076  0.768
2016 Jin Y, Watkins D, Degtyareva NN, Green KD, Spano MN, Garneau-Tsodikova S, Arya DP. Arginine-linked neomycin B dimers: synthesis, rRNA binding, and resistance enzyme activity. Medchemcomm. 7: 164-169. PMID 26811742 DOI: 10.1039/C5Md00427F  0.735
2016 Kumar S, Ranjan N, Kellish P, Gong C, Watkins D, Arya DP. Multivalency in the recognition and antagonism of a HIV TAR RNA-TAT assembly using an aminoglycoside benzimidazole scaffold. Organic & Biomolecular Chemistry. 14: 2052-6. PMID 26765486 DOI: 10.1039/C5Ob02016F  0.735
2015 Nahar S, Ranjan N, Ray A, Arya DP, Maiti S. Potent inhibition of miR-27a by neomycin-bisbenzimidazole conjugates. Chemical Science. 6: 5837-5846. PMID 29861909 DOI: 10.1039/C5Sc01969A  0.697
2015 Watkins D, Jiang L, Nahar S, Maiti S, Arya DP. A pH Sensitive High-Throughput Assay for miRNA Binding of a Peptide-Aminoglycoside (PA) Library. Plos One. 10: e0144251. PMID 26656788 DOI: 10.1371/Journal.Pone.0144251  0.335
2015 Kumar S, Spano MN, Arya DP. Influence of linker length in shape recognition of B(∗) DNA by dimeric aminoglycosides. Bioorganic & Medicinal Chemistry. 23: 3105-9. PMID 26025072 DOI: 10.1016/J.Bmc.2015.04.082  0.76
2015 Watkins D, Kumar S, Green KD, Arya DP, Garneau-Tsodikova S. Influence of Linker Length and Composition on Enzymatic Activity and Ribosomal Binding of Neomycin Dimers. Antimicrobial Agents and Chemotherapy. 59: 3899-905. PMID 25896697 DOI: 10.1128/Aac.00861-15  0.415
2015 Jiang L, Watkins D, Jin Y, Gong C, King A, Washington AZ, Green KD, Garneau-Tsodikova S, Oyelere AK, Arya DP. Rapid synthesis, RNA binding, and antibacterial screening of a peptidic-aminosugar (PA) library. Acs Chemical Biology. 10: 1278-89. PMID 25706406 DOI: 10.1021/Cb5010367  0.409
2014 Kellish PC, Kumar S, Mack TS, Spano MN, Hennig M, Arya DP. Multivalent Amino Sugars to Recognize Different TAR RNA Conformations. Medchemcomm. 5: 1235-1246. PMID 27076899 DOI: 10.1039/C4Md00165F  0.748
2014 Ranjan N, Fulcrand G, King A, Brown J, Jiang X, Leng F, Arya DP. Selective Inhibition of Bacterial Topoisomerase I by alkynyl-bisbenzimidazoles. Medchemcomm. 5: 816-825. PMID 25083189 DOI: 10.1039/C4Md00140K  0.703
2014 Woo CM, Ranjan N, Arya DP, Herzon SB. Analysis of diazofluorene DNA binding and damaging activity: DNA cleavage by a synthetic monomeric diazofluorene. Angewandte Chemie (International Ed. in English). 53: 9325-8. PMID 25044348 DOI: 10.1002/Anie.201404137  0.738
2014 Willis B, Arya DP. Recognition of RNA duplex by a neomycin-Hoechst 33258 conjugate. Bioorganic & Medicinal Chemistry. 22: 2327-32. PMID 24630691 DOI: 10.1016/J.Bmc.2014.02.003  0.547
2014 Kumar S, Newby Spano M, Arya DP. Shape readout of AT-rich DNA by carbohydrates. Biopolymers. 101: 720-32. PMID 24281844 DOI: 10.1002/Bip.22448  0.526
2013 Ranjan N, Arya DP. Targeting C-myc G-quadruplex: dual recognition by aminosugar-bisbenzimidazoles with varying linker lengths. Molecules (Basel, Switzerland). 18: 14228-40. PMID 24252993 DOI: 10.3390/Molecules181114228  0.722
2013 Watkins D, Ranjan N, Kumar S, Gong C, Arya DP. An assay for human telomeric G-quadruplex DNA binding drugs. Bioorganic & Medicinal Chemistry Letters. 23: 6695-9. PMID 24246738 DOI: 10.1016/J.Bmcl.2013.10.030  0.752
2013 Ranjan N, Kumar S, Watkins D, Wang D, Appella DH, Arya DP. Recognition of HIV-TAR RNA using neomycin-benzimidazole conjugates. Bioorganic & Medicinal Chemistry Letters. 23: 5689-93. PMID 24012122 DOI: 10.1016/J.Bmcl.2013.08.014  0.75
2013 King A, Watkins D, Kumar S, Ranjan N, Gong C, Whitlock J, Arya DP. Characterization of ribosomal binding and antibacterial activities using two orthogonal high-throughput screens. Antimicrobial Agents and Chemotherapy. 57: 4717-26. PMID 23856777 DOI: 10.1128/Aac.00671-13  0.728
2013 Ranjan N, Davis E, Xue L, Arya DP. Dual recognition of the human telomeric G-quadruplex by a neomycin-anthraquinone conjugate. Chemical Communications (Cambridge, England). 49: 5796-8. PMID 23698792 DOI: 10.1039/C3Cc42721H  0.736
2013 Watkins D, Norris FA, Kumar S, Arya DP. A fluorescence-based screen for ribosome binding antibiotics. Analytical Biochemistry. 434: 300-7. PMID 23262284 DOI: 10.1016/J.Ab.2012.12.003  0.421
2013 Kumar S, Kellish P, Robinson WE, Wang D, Appella DH, Arya DP. Correction to Click Dimers To Target HIV TAR RNA Conformation Biochemistry. 52: 7159-7159. DOI: 10.1021/Bi401088N  0.341
2012 Charles I, Davis E, Arya DP. Efficient stabilization of phosphodiester (PO), phosphorothioate (PS), and 2'-O-methoxy (2'-OMe) DNA·RNA hybrid duplexes by amino sugars. Biochemistry. 51: 5496-505. PMID 22639785 DOI: 10.1021/Bi3004507  0.355
2012 Kumar S, Kellish P, Robinson WE, Wang D, Appella DH, Arya DP. Click dimers to target HIV TAR RNA conformation. Biochemistry. 51: 2331-47. PMID 22339203 DOI: 10.1021/Bi201657K  0.422
2012 Hamilton PL, Arya DP. Natural product DNA major groove binders. Natural Product Reports. 29: 134-43. PMID 22183179 DOI: 10.1039/C1Np00054C  0.483
2011 Xi H, Davis E, Ranjan N, Xue L, Hyde-Volpe D, Arya DP. Thermodynamics of nucleic acid "shape readout" by an aminosugar. Biochemistry. 50: 9088-113. PMID 21863895 DOI: 10.1021/Bi201077H  0.777
2011 Kumar S, Arya DP. Recognition of HIV TAR RNA by triazole linked neomycin dimers. Bioorganic & Medicinal Chemistry Letters. 21: 4788-92. PMID 21757341 DOI: 10.1016/J.Bmcl.2011.06.058  0.386
2011 Kumar S, Xue L, Arya DP. Neomycin-neomycin dimer: an all-carbohydrate scaffold with high affinity for AT-rich DNA duplexes. Journal of the American Chemical Society. 133: 7361-75. PMID 21524066 DOI: 10.1021/Ja108118V  0.51
2011 Xue L, Ranjan N, Arya DP. Synthesis and spectroscopic studies of the aminoglycoside (neomycin)--perylene conjugate binding to human telomeric DNA. Biochemistry. 50: 2838-49. PMID 21329360 DOI: 10.1021/Bi1017304  0.791
2011 Arya DP. New approaches toward recognition of nucleic acid triple helices. Accounts of Chemical Research. 44: 134-46. PMID 21073199 DOI: 10.1021/Ar100113Q  0.465
2010 Ranjan N, Andreasen KF, Kumar S, Hyde-Volpe D, Arya DP. Aminoglycoside binding to Oxytricha nova telomeric DNA. Biochemistry. 49: 9891-903. PMID 20886815 DOI: 10.1021/Bi101517E  0.779
2010 Xue L, Xi H, Kumar S, Gray D, Davis E, Hamilton P, Skriba M, Arya DP. Probing the recognition surface of a DNA triplex: binding studies with intercalator-neomycin conjugates. Biochemistry. 49: 5540-52. PMID 20499878 DOI: 10.1021/Bi100071J  0.633
2010 Xi H, Kumar S, Dosen-Micovic L, Arya DP. Calorimetric and spectroscopic studies of aminoglycoside binding to AT-rich DNA triple helices. Biochimie. 92: 514-29. PMID 20167243 DOI: 10.1016/J.Biochi.2010.02.004  0.636
2010 Willis B, Arya DP. Triple recognition of B-DNA by a neomycin-Hoechst 33258-pyrene conjugate. Biochemistry. 49: 452-69. PMID 20000367 DOI: 10.1021/Bi9016796  0.555
2010 ARYA DP, WARNER PM, JEBARATNAM DJ. ChemInform Abstract: Development of New DNA-Binding and Cleaving Molecules: Design, Synthesis and Activity of a Bisdiazonium Salt. Cheminform. 25: no-no. DOI: 10.1002/chin.199414184  0.353
2009 Willis B, Arya DP. Triple recognition of B-DNA. Bioorganic & Medicinal Chemistry Letters. 19: 4974-9. PMID 19651510 DOI: 10.1016/J.Bmcl.2009.07.079  0.515
2009 Xi H, Gray D, Kumar S, Arya DP. Molecular recognition of single-stranded RNA: neomycin binding to poly(A). Febs Letters. 583: 2269-75. PMID 19520078 DOI: 10.1016/J.Febslet.2009.06.007  0.644
2008 Shaw NN, Xi H, Arya DP. Molecular recognition of a DNA:RNA hybrid: sub-nanomolar binding by a neomycin-methidium conjugate. Bioorganic & Medicinal Chemistry Letters. 18: 4142-5. PMID 18573660 DOI: 10.1016/J.Bmcl.2008.05.090  0.815
2008 Shaw NN, Arya DP. Recognition of the unique structure of DNA:RNA hybrids. Biochimie. 90: 1026-39. PMID 18486626 DOI: 10.1016/J.Biochi.2008.04.011  0.814
2007 Charles I, Xi H, Arya DP. Sequence-specific targeting of RNA with an oligonucleotide-neomycin conjugate. Bioconjugate Chemistry. 18: 160-9. PMID 17226969 DOI: 10.1021/Bc060249R  0.67
2007 Arya DP, Shaw N, Xi H. Novel Targets for Aminoglycosides Aminoglycoside Antibiotics: From Chemical Biology to Drug Discovery. 289-314. DOI: 10.1002/9780470149676.ch11  0.743
2006 Willis B, Arya DP. Recognition of B-DNA by neomycin--Hoechst 33258 conjugates. Biochemistry. 45: 10217-32. PMID 16922497 DOI: 10.1021/Bi0609265  0.544
2006 Willis B, Arya DP. An expanding view of aminoglycoside-nucleic acid recognition. Advances in Carbohydrate Chemistry and Biochemistry. 60: 251-302. PMID 16750445 DOI: 10.1016/S0065-2318(06)60006-1  0.353
2005 Xi H, Arya DP. Recognition of triple helical nucleic acids by aminoglycosides. Current Medicinal Chemistry. Anti-Cancer Agents. 5: 327-38. PMID 16101485 DOI: 10.2174/1568011054222328  0.61
2005 Napoli S, Carbone GM, Catapano CV, Shaw N, Arya DP. Neomycin improves cationic lipid-mediated transfection of DNA in human cells. Bioorganic & Medicinal Chemistry Letters. 15: 3467-9. PMID 15950473 DOI: 10.1016/J.Bmcl.2005.04.038  0.768
2005 Charles I, Arya DP. Synthesis of Neomycin‐DNA/Peptide Nucleic Acid Conjugates Journal of Carbohydrate Chemistry. 24: 145-160. DOI: 10.1081/Car-200059973  0.393
2004 Arya DP, Coffee RL, Xue L. From triplex to B-form duplex stabilization: reversal of target selectivity by aminoglycoside dimers. Bioorganic & Medicinal Chemistry Letters. 14: 4643-6. PMID 15324880 DOI: 10.1016/J.Bmcl.2004.07.002  0.479
2003 Arya DP, Willis B. Reaching into the major groove of B-DNA: synthesis and nucleic acid binding of a neomycin-hoechst 33258 conjugate. Journal of the American Chemical Society. 125: 12398-9. PMID 14531669 DOI: 10.1021/Ja036742K  0.517
2003 Arya DP, Xue L, Willis B. Aminoglycoside (neomycin) preference is for A-form nucleic acids, not just RNA: results from a competition dialysis study. Journal of the American Chemical Society. 125: 10148-9. PMID 12926918 DOI: 10.1021/Ja035117C  0.445
2003 Davis WC, Venzie JL, Willis B, Coffee RL, Arya DP, Marcus RK. Particle beam glow discharge mass spectrometry: spectral characteristics of nucleobases. Rapid Communications in Mass Spectrometry : Rcm. 17: 1749-58. PMID 12872280 DOI: 10.1002/Rcm.1117  0.313
2003 Arya DP, Xue L, Tennant P. Combining the best in triplex recognition: synthesis and nucleic acid binding of a BQQ-neomycin conjugate. Journal of the American Chemical Society. 125: 8070-1. PMID 12837054 DOI: 10.1021/Ja034241T  0.535
2003 Arya DP, Micovic L, Charles I, Coffee RL, Willis B, Xue L. Neomycin binding to Watson-Hoogsteen (W-H) DNA triplex groove: a model. Journal of the American Chemical Society. 125: 3733-44. PMID 12656603 DOI: 10.1021/Ja027765M  0.499
2002 Xue L, Charles I, Arya DP. Pyrene-neomycin conjugate: dual recognition of a DNA triple helix. Chemical Communications (Cambridge, England). 70-1. PMID 12120315 DOI: 10.1039/B108171C  0.498
2002 Charles I, Xue L, Arya DP. Synthesis of aminoglycoside-DNA conjugates. Bioorganic & Medicinal Chemistry Letters. 12: 1259-62. PMID 11965366 DOI: 10.1016/S0960-894X(02)00157-9  0.464
2001 Arya DP, Coffee RL, Willis B, Abramovitch AI. Aminoglycoside-nucleic acid interactions: remarkable stabilization of DNA and RNA triple helices by neomycin. Journal of the American Chemical Society. 123: 5385-95. PMID 11389616 DOI: 10.1021/Ja003052X  0.48
2000 Arya DP, Coffee RL. DNA triple helix stabilization by aminoglycoside antibiotics. Bioorganic & Medicinal Chemistry Letters. 10: 1897-9. PMID 10987412 DOI: 10.1016/S0960-894X(00)00372-3  0.412
2000 Arya DP, Bruice TC. Solid-phase synthesis of oligomeric deoxynucleic-thiourea (DNT) and deoxynucleic S-methylthiourea (DNmt): a neutral/polycationic analogue of DNA. Bioorganic & Medicinal Chemistry Letters. 10: 691-3. PMID 10782665 DOI: 10.1016/S0960-894X(00)00085-8  0.535
1999 Arya DP, Bruice TC. Triple-helix formation of DNA oligomers with methylthiourea-linked nucleosides (DNmt): a kinetic and thermodynamic analysis. Proceedings of the National Academy of Sciences of the United States of America. 96: 4384-9. PMID 10200271 DOI: 10.1073/Pnas.96.8.4384  0.545
1999 Arya DP, Bruice TC. Fidelity of deoxynucleic S-methythiourea (DNmt) binding to DNA oligomers: Influence of C mismatches Journal of the American Chemical Society. 121: 10680-10684. DOI: 10.1021/Ja992871I  0.54
1998 Arya DP, Bruice TC. Positively charged deoxynucleic methylthioureas: Synthesis and binding properties of pentameric thymidyl methylthiourea Journal of the American Chemical Society. 120: 12419-12427. DOI: 10.1021/Ja9829416  0.494
1998 Arya DP, Bruice TC. Replacement of the negative phosphodiester linkages of DNA by positive S-methylthiourea tinkers: A novel approach to putative antisense agents Journal of the American Chemical Society. 120: 6619-6620. DOI: 10.1021/Ja980629Q  0.514
1995 Arya DP, Jebaratnam DJ. DNA Cleaving Ability of 9-Diazofluorenes and Diaryl Diazomethanes: Implications for the Mode of Action of the Kinamycin Antibiotics The Journal of Organic Chemistry. 60: 3268-3269. DOI: 10.1021/Jo00116A002  0.356
1995 Jebaratnam DJ, Arya DP, Chen H, Kugabalasooriar S, Vo D. A single precursor approach to new DNA cleaving and crosslinking agents Bioorganic & Medicinal Chemistry Letters. 5: 1191-1196. DOI: 10.1016/0960-894X(95)00193-W  0.456
1995 Arya DP, Jebaratnam DJ. Towards the development of non-enediyne approaches for mimicking enediyne chemistry: Design, synthesis and activity of a 1,4-bisdiazonium compound Tetrahedron Letters. 36: 4369-4372. DOI: 10.1016/0040-4039(95)00815-T  0.386
1995 Jebaratnam DJ, Kugabalasooriar S, Chen H, Arya DP. Azoester compounds for inducing DNA cleavage under physiological conditions Tetrahedron Letters. 36: 3123-3126. DOI: 10.1016/0040-4039(95)00480-Z  0.405
1993 Arya DP, Warner PM, Jebaratnam DJ. Development of new DNA-binding and cleaving molecules: Design, synthesis and activity of a bisdiazonium salt Tetrahedron Letters. 34: 7823-7826. DOI: 10.1016/S0040-4039(00)61485-5  0.512
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