Daniele Fabris - Publications

Affiliations: 
Chemistry University of Maryland, Baltimore County 
Area:
Analytical Chemistry

44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Myers CA, D'Esposito RJ, Fabris D, Ranganathan SV, Chen AA. CoSIMS: An Optimized Trajectory Based Collision Simulator for Ion Mobility Spectrometry. The Journal of Physical Chemistry. B. PMID 31042389 DOI: 10.1021/acs.jpcb.9b01018  0.36
2018 Wang R, Ranganathan SV, Haruehanroengra P, Mao S, Scalabrin M, Fabris D, Chen A, Liu H, Hassan AEA, Gan J, Sheng J. Construction and Structure Studies of DNA-bipyridine Complexes as Versatile Scaffolds for Site-Specific Incorporation of Metal Ions into DNA. Journal of Biomolecular Structure & Dynamics. 1-56. PMID 29447072 DOI: 10.1080/07391102.2018.1441071  0.36
2016 Garabedian A, Butcher D, Lippens JL, Miksovska J, Chapagain PP, Fabris D, Ridgeway ME, Park MA, Fernandez-Lima F. Structures of the kinetically trapped i-motif DNA intermediates. Physical Chemistry Chemical Physics : Pccp. 18: 26691-26702. PMID 27711445 DOI: 10.1039/c6cp04418b  0.36
2016 Lippens JL, Ranganathan SV, D'Esposito RJ, Fabris D. Modular calibrant sets for the structural analysis of nucleic acids by ion mobility spectrometry mass spectrometry. The Analyst. PMID 27152369 DOI: 10.1039/c6an00453a  0.36
2016 Rose RE, Pazos MA, Curcio MJ, Fabris D. Global Epitranscriptomics Profiling of RNA Post-Transcriptional Modifications as an Effective Tool for Investigating the Epitranscriptomics of Stress Response. Molecular & Cellular Proteomics : McP. 15: 932-44. PMID 26733207 DOI: 10.1074/mcp.M115.054718  0.6
2016 Lippens JL, Mangrum JB, McIntyre W, Redick B, Fabris D. A simple heated-capillary modification improves the analysis of non-covalent complexes by Z-spray electrospray ionization Rapid Communications in Mass Spectrometry. 30: 773-783. DOI: 10.1002/rcm.7490  0.6
2015 Rose RE, Quinn R, Sayre JL, Fabris D. Profiling ribonucleotide modifications at full-transcriptome level: a step toward MS-based epitranscriptomics. Rna (New York, N.Y.). 21: 1361-74. PMID 25995446 DOI: 10.1261/rna.049429.114  0.6
2014 Asare-Okai PN, Agustin E, Fabris D, Royzen M. Site-specific fluorescence labelling of RNA using bio-orthogonal reaction of trans-cyclooctene and tetrazine. Chemical Communications (Cambridge, England). 50: 7844-7. PMID 24909672 DOI: 10.1039/c4cc02435d  0.6
2014 Scalabrin M, Siu Y, Asare-Okai PN, Fabris D. Structure-specific ribonucleases for MS-based elucidation of higher-order RNA structure. Journal of the American Society For Mass Spectrometry. 25: 1136-45. PMID 24845355 DOI: 10.1007/s13361-014-0911-2  0.6
2013 Stephenson W, Asare-Okai PN, Chen AA, Keller S, Santiago R, Tenenbaum SA, Garcia AE, Fabris D, Li PT. The essential role of stacking adenines in a two-base-pair RNA kissing complex. Journal of the American Chemical Society. 135: 5602-11. PMID 23517345 DOI: 10.1021/ja310820h  0.6
2012 Fabris D, Kellersberger KA, Wilhide JA. Higher-order structure of nucleic acids in the gas phase: top-down analysis of base-pairing interactions. International Journal of Mass Spectrometry. 312: 155-162. PMID 24027423 DOI: 10.1016/j.ijms.2011.07.014  0.6
2011 Cantara WA, Crain PF, Rozenski J, McCloskey JA, Harris KA, Zhang X, Vendeix FA, Fabris D, Agris PF. The RNA Modification Database, RNAMDB: 2011 update. Nucleic Acids Research. 39: D195-201. PMID 21071406 DOI: 10.1093/nar/gkq1028  0.6
2010 Fabris D, Yu ET. Elucidating the higher-order structure of biopolymers by structural probing and mass spectrometry: MS3D. Journal of Mass Spectrometry : Jms. 45: 841-60. PMID 20648672 DOI: 10.1002/jms.1762  0.6
2009 Fabris D, Marino JP, Le Grice SF. Revisiting plus-strand DNA synthesis in retroviruses and long terminal repeat retrotransposons: dynamics of enzyme: substrate interactions. Viruses. 1: 657-77. PMID 21994564 DOI: 10.3390/v1030657  0.6
2009 Turner KB, Yi-Brunozzi HY, Brinson RG, Marino JP, Fabris D, Le Grice SF. SHAMS: combining chemical modification of RNA with mass spectrometry to examine polypurine tract-containing RNA/DNA hybrids. Rna (New York, N.Y.). 15: 1605-13. PMID 19535461 DOI: 10.1261/rna.1615409  0.6
2009 Brinson RG, Turner KB, Yi-Brunozzi HY, Le Grice SF, Fabris D, Marino JP. Probing anomalous structural features in polypurine tract-containing RNA-DNA hybrids with neomycin B. Biochemistry. 48: 6988-97. PMID 19449839 DOI: 10.1021/bi900357j  0.6
2009 Gapeev A, Berton A, Fabris D. Current-controlled nanospray ionization mass spectrometry. Journal of the American Society For Mass Spectrometry. 20: 1334-41. PMID 19359196 DOI: 10.1016/j.jasms.2009.03.007  0.6
2009 Turner KB, Kohlway AS, Hagan NA, Fabris D. Noncovalent probes for the investigation of structure and dynamics of protein-nucleic acid assemblies: the case of NC-mediated dimerization of genomic RNA in HIV-1. Biopolymers. 91: 283-96. PMID 18946871 DOI: 10.1002/bip.21107  0.6
2008 Yu ET, Hawkins A, Kuntz ID, Rahn LA, Rothfuss A, Sale K, Young MM, Yang CL, Pancerella CM, Fabris D. The collaboratory for MS3D: a new cyberinfrastructure for the structural elucidation of biological macromolecules and their assemblies using mass spectrometry-based approaches. Journal of Proteome Research. 7: 4848-57. PMID 18817429 DOI: 10.1021/pr800443f  0.6
2008 Zhang Q, Crosland E, Fabris D. Nested Arg-specific bifunctional crosslinkers for MS-based structural analysis of proteins and protein assemblies. Analytica Chimica Acta. 627: 117-28. PMID 18790135 DOI: 10.1016/j.aca.2008.05.074  0.8
2008 Turner KB, Monti SA, Fabris D. Like polarity ion/ion reactions enable the investigation of specific metal interactions in nucleic acids and their noncovalent assemblies. Journal of the American Chemical Society. 130: 13353-63. PMID 18785739 DOI: 10.1021/ja8045734  0.6
2008 Legiewicz M, Badorrek CS, Turner KB, Fabris D, Hamm TE, Rekosh D, Hammarskjöld ML, Le Grice SF. Resistance to RevM10 inhibition reflects a conformational switch in the HIV-1 Rev response element. Proceedings of the National Academy of Sciences of the United States of America. 105: 14365-70. PMID 18776047 DOI: 10.1073/pnas.0804461105  0.6
2008 Holland R, Hawkins AE, Eggler AL, Mesecar AD, Fabris D, Fishbein JC. Prospective type 1 and type 2 disulfides of Keap1 protein. Chemical Research in Toxicology. 21: 2051-60. PMID 18729328 DOI: 10.1021/tx800226m  0.6
2008 Yu ET, Hawkins A, Eaton J, Fabris D. MS3D structural elucidation of the HIV-1 packaging signal. Proceedings of the National Academy of Sciences of the United States of America. 105: 12248-53. PMID 18713870 DOI: 10.1073/pnas.0800509105  0.6
2008 Turner KB, Brinson RG, Yi-Brunozzi HY, Rausch JW, Miller JT, Le Grice SF, Marino JP, Fabris D. Structural probing of the HIV-1 polypurine tract RNA:DNA hybrid using classic nucleic acid ligands. Nucleic Acids Research. 36: 2799-810. PMID 18400780 DOI: 10.1093/nar/gkn129  0.6
2007 Stephen AG, Datta SA, Worthy KM, Bindu L, Fivash MJ, Turner KB, Fabris D, Rein A, Fisher RJ. Measuring the binding stoichiometry of HIV-1 Gag to very-low-density oligonucleotide surfaces using surface plasmon resonance spectroscopy. Journal of Biomolecular Techniques : Jbt. 18: 259-66. PMID 17916799  0.6
2007 Turner KB, Hagan NA, Fabris D. Understanding the isomerization of the HIV-1 dimerization initiation domain by the nucleocapsid protein. Journal of Molecular Biology. 369: 812-28. PMID 17466332 DOI: 10.1016/j.jmb.2007.03.065  0.6
2006 Zhang Q, Yu ET, Kellersberger KA, Crosland E, Fabris D. Toward building a database of bifunctional probes for the MS3D investigation of nucleic acids structures. Journal of the American Society For Mass Spectrometry. 17: 1570-81. PMID 16875836 DOI: 10.1016/j.jasms.2006.06.002  0.6
2006 Turner KB, Hagan NA, Kohlway AS, Fabris D. Mapping noncovalent ligand binding to stemloop domains of the HIV-1 packaging signal by tandem mass spectrometry. Journal of the American Society For Mass Spectrometry. 17: 1401-11. PMID 16872834 DOI: 10.1016/j.jasms.2006.06.009  0.6
2006 Turner KB, Hagan NA, Fabris D. Inhibitory effects of archetypical nucleic acid ligands on the interactions of HIV-1 nucleocapsid protein with elements of Psi-RNA. Nucleic Acids Research. 34: 1305-16. PMID 16522643 DOI: 10.1093/nar/gkl004  0.6
2006 Fisher RJ, Fivash MJ, Stephen AG, Hagan NA, Shenoy SR, Medaglia MV, Smith LR, Worthy KM, Simpson JT, Shoemaker R, McNitt KL, Johnson DG, Hixson CV, Gorelick RJ, Fabris D, et al. Complex interactions of HIV-1 nucleocapsid protein with oligonucleotides. Nucleic Acids Research. 34: 472-84. PMID 16434700 DOI: 10.1093/nar/gkj442  0.6
2006 Rait VK, Zhang Q, Fabris D, Mason JT, O'Leary TJ. Conversions of formaldehyde-modified 2'-deoxyadenosine 5'-monophosphate in conditions modeling formalin-fixed tissue dehydration. The Journal of Histochemistry and Cytochemistry : Official Journal of the Histochemistry Society. 54: 301-10. PMID 16116034 DOI: 10.1369/jhc.5A6725.2005  0.6
2005 Akinsiku OT, Yu ET, Fabris D. Mass spectrometric investigation of protein alkylation by the RNA footprinting probe kethoxal. Journal of Mass Spectrometry : Jms. 40: 1372-81. PMID 16237662 DOI: 10.1002/jms.932  0.6
2005 Kellersberger KA, Yu ET, Merenbloom SI, Fabris D. Atmospheric pressure MALDI-FTMS of normal and chemically modified RNA. Journal of the American Society For Mass Spectrometry. 16: 199-207. PMID 15694770 DOI: 10.1016/j.jasms.2004.10.008  0.6
2005 Yu ET, Zhang Q, Fabris D. Untying the FIV frameshifting pseudoknot structure by MS3D. Journal of Molecular Biology. 345: 69-80. PMID 15567411 DOI: 10.1016/j.jmb.2004.10.014  0.8
2004 Maddaford SP, Motamed M, Turner KB, Choi MS, Ramnauth J, Rakhit S, Hudgins RR, Fabris D, Johnson PE. Identification of a novel non-carbohydrate molecule that binds to the ribosomal A-site RNA. Bioorganic & Medicinal Chemistry Letters. 14: 5987-90. PMID 15546714 DOI: 10.1016/j.bmcl.2004.09.088  0.6
2004 Kellersberger KA, Tan PV, Laiko VV, Doroshenko VM, Fabris D. Atmospheric pressure MALDI-fourier transform mass spectrometry. Analytical Chemistry. 76: 3930-4. PMID 15253626 DOI: 10.1021/ac0498415  0.6
2004 Kellersberger KA, Yu E, Kruppa GH, Young MM, Fabris D. Top-down characterization of nucleic acids modified by structural probes using high-resolution tandem mass spectrometry and automated data interpretation. Analytical Chemistry. 76: 2438-45. PMID 15117181 DOI: 10.1021/ac0355045  0.6
2003 Gelhaus SL, LaCourse WR, Hagan NA, Amarasinghe GK, Fabris D. Rapid purification of RNA secondary structures. Nucleic Acids Research. 31: e135. PMID 14576335  0.6
2002 Zhang Q, Ding Z, Creighton DJ, Ganem B, Fabris D. Alkylation of nucleic acids by the antitumor agent COMC. Organic Letters. 4: 1459-62. PMID 11975603 DOI: 10.1021/ol025612y  0.6
2002 Cai M, Shi X, Sidorov V, Fabris D, Lam YF, Davis JT. Cation-directed self-assembly of lipophilic nucleosides: The cation's central role in the structure and dynamics of a hydrogen-bonded assembly Tetrahedron. 58: 661-671. DOI: 10.1016/S0040-4020(01)01101-2  0.6
1996 Fabris D, Zaia J, Hathout Y, Fenselau C. Retention of thiol protons in two classes of protein zinc ion coordination centers Journal of the American Chemical Society. 118: 12242-12243. DOI: 10.1021/ja962863r  0.6
1995 Fabris D, Wu Z, Fenselau CC. Massive cluster impact ionization on a four sector tandem mass spectrometer Journal of Mass Spectrometry. 30: 140-143. DOI: 10.1002/jms.1190300121  0.6
1995 Kaltashov IA, Fabris D, Fenselau CC. Assessment of gas phase basicities of protonated peptides by the kinetic method Journal of Physical Chemistry. 99: 10046-10051.  0.6
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