James D. Baleja - Publications

Affiliations: 
Biochemistry Sackler School of Graduate Biomedical Sciences (Tufts University) 
Area:
Biochemistry

63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Zhang P, Leger AJ, Baleja JD, Rana R, Corlin T, Nguyen N, Koukos G, Bohm A, Covic L, Kuliopulos A. Allosteric Activation of a G Protein-coupled Receptor with Cell-penetrating Receptor Mimetics. The Journal of Biological Chemistry. 290: 15785-98. PMID 25934391 DOI: 10.1074/Jbc.M115.636316  0.323
2014 Quartararo JS, Eshelman MR, Peraro L, Yu H, Baleja JD, Lin YS, Kritzer JA. A bicyclic peptide scaffold promotes phosphotyrosine mimicry and cellular uptake. Bioorganic & Medicinal Chemistry. 22: 6387-91. PMID 25438762 DOI: 10.1016/J.Bmc.2014.09.050  0.406
2014 Kamens AJ, Eisert RJ, Corlin T, Baleja JD, Kritzer JA. Structured cyclic peptides that bind the EH domain of EHD1. Biochemistry. 53: 4758-60. PMID 25014215 DOI: 10.1021/Bi500744Q  0.417
2013 Cherry JJ, Rietz A, Malinkevich A, Liu Y, Xie M, Bartolowits M, Davisson VJ, Baleja JD, Androphy EJ. Structure based identification and characterization of flavonoids that disrupt human papillomavirus-16 E6 function. Plos One. 8: e84506. PMID 24376816 DOI: 10.1371/Journal.Pone.0084506  0.311
2013 Liberman R, Cotter K, Baleja JD, Forgac M. Structural analysis of the N-terminal domain of subunit a of the yeast vacuolar ATPase (V-ATPase) using accessibility of single cysteine substitutions to chemical modification. The Journal of Biological Chemistry. 288: 22798-808. PMID 23740254 DOI: 10.1074/Jbc.M113.460295  0.386
2013 Krishnamurthy VM, Raman VS, Mowery RA, Hentz M, Baleja JD, Shaw BF, Kumar K. Ligand-induced protein mobility in complexes of carbonic anhydrase II and benzenesulfonamides with oligoglycine chains. Plos One. 8: e57629. PMID 23472094 DOI: 10.1371/Journal.Pone.0057629  0.344
2013 Nuzzio KM, Cullinan DB, Novakovic VA, Boettcher JM, Rienstra CM, Gilbert GE, Baleja JD. Backbone resonance assignments of the C2 domain of coagulation factor VIII. Biomolecular Nmr Assignments. 7: 31-4. PMID 22392338 DOI: 10.1007/S12104-012-9370-5  0.401
2012 Clark GA, Baleja JD, Kumar K. Cross-strand interactions of fluorinated amino acids in β-hairpin constructs. Journal of the American Chemical Society. 134: 17912-21. PMID 23078597 DOI: 10.1021/Ja212080F  0.37
2012 Nuzzio K, Cullinan D, Novakovic V, Boettcher J, Rienstra C, Gilbert G, Baleja J. FVIII C2 Domain Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr17829  0.321
2011 Badway JA, Baleja JD. Reps2: A cellular signaling and molecular trafficking nexus The International Journal of Biochemistry & Cell Biology. 43: 1660-1663. PMID 21907823 DOI: 10.1016/J.Biocel.2011.08.014  0.303
2011 Bose K, Meinke G, Bohm A, Baleja JD. Design and characterization of an enhanced repressor of human papillomavirus E2 protein. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 25: 2354-61. PMID 21482558 DOI: 10.1096/Fj.10-176461  0.382
2011 Novakovic VA, Cullinan DB, Wakabayashi H, Fay PJ, Baleja JD, Gilbert GE. Membrane-binding properties of the Factor VIII C2 domain. The Biochemical Journal. 435: 187-96. PMID 21210768 DOI: 10.1042/Bj20101797  0.379
2010 Henry GD, Corrigan DJ, Dineen JV, Baleja JD. Charge effects in the selection of NPF motifs by the EH domain of EHD1. Biochemistry. 49: 3381-92. PMID 20329706 DOI: 10.1021/Bi100065R  0.418
2009 Liu Y, Cherry JJ, Dineen JV, Androphy EJ, Baleja JD. Determinants of stability for the E6 protein of papillomavirus type 16. Journal of Molecular Biology. 386: 1123-37. PMID 19244625 DOI: 10.1016/J.Jmb.2009.01.018  0.446
2009 Wei J, Liu Y, Bose K, Henry GD, Baleja JD. Disorder and structure in the Rab11 binding domain of Rab11 family interacting protein 2. Biochemistry. 48: 549-57. PMID 19119858 DOI: 10.1021/Bi8020197  0.46
2009 Henry GD, Dineen JV, Baleja JD. The Importance of Electrostatic Effects in the Recognition of NPF Motifs by the EH Domains of Mammalian EHD Proteins Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.3117  0.449
2008 Morstadt L, Bohm A, Yüksel D, Kumar K, Stollar BD, Baleja JD. Engineering and characterization of a single chain surrogate light chain variable domain. Protein Science : a Publication of the Protein Society. 17: 458-65. PMID 18287279 DOI: 10.1110/Ps.073269808  0.348
2008 Liu Y, Baleja JD. Structure and function of the papillomavirus E6 protein and its interacting proteins. Frontiers in Bioscience : a Journal and Virtual Library. 13: 121-34. PMID 17981532 DOI: 10.2741/2664  0.409
2007 Liu Y, Henry GD, Hegde RS, Baleja JD. Solution structure of the hDlg/SAP97 PDZ2 domain and its mechanism of interaction with HPV-18 papillomavirus E6 protein. Biochemistry. 46: 10864-74. PMID 17713926 DOI: 10.1021/Bi700879K  0.377
2007 Bose K, Yoder NC, Kumar K, Baleja JD. The role of conserved histidines in the structure and stability of human papillomavirus type 16 E2 DNA-binding domain. Biochemistry. 46: 1402-11. PMID 17260970 DOI: 10.1021/Bi0611255  0.399
2006 Wei J, Fain S, Harrison C, Feig LA, Baleja JD. Molecular dissection of Rab11 binding from coiled-coil formation in the Rab11-FIP2 C-terminal domain. Biochemistry. 45: 6826-34. PMID 16734419 DOI: 10.1021/Bi052655O  0.468
2006 Baleja JD, Cherry JJ, Liu Z, Gao H, Nicklaus MC, Voigt JH, Chen JJ, Androphy EJ. Identification of inhibitors to papillomavirus type 16 E6 protein based on three-dimensional structures of interacting proteins. Antiviral Research. 72: 49-59. PMID 16690141 DOI: 10.1016/J.Antiviral.2006.03.014  0.37
2005 Mukhopadhyay S, Langsetmo K, Stafford WF, Henry GD, Baleja JD, Sarkar S. Identification of a region of fast skeletal troponin T required for stabilization of the coiled-coil formation with troponin I. The Journal of Biological Chemistry. 280: 538-47. PMID 15507453 DOI: 10.1074/Jbc.M409537200  0.41
2004 Liu Y, Liu Z, Androphy E, Chen J, Baleja JD. Design and characterization of helical peptides that inhibit the E6 protein of papillomavirus. Biochemistry. 43: 7421-31. PMID 15182185 DOI: 10.1021/Bi049552A  0.439
2003 Seeley S, Covic L, Jacques SL, Sudmeier J, Baleja JD, Kuliopulos A. Structural basis for thrombin activation of a protease-activated receptor: inhibition of intramolecular liganding. Chemistry & Biology. 10: 1033-41. PMID 14652070 DOI: 10.1016/J.Chembiol.2003.10.014  0.368
2002 Cullis DN, Philip B, Baleja JD, Feig LA. Rab11-FIP2, an adaptor protein connecting cellular components involved in internalization and recycling of epidermal growth factor receptors. The Journal of Biological Chemistry. 277: 49158-66. PMID 12364336 DOI: 10.1074/Jbc.M206316200  0.33
2002 Arata Y, Baleja JD, Forgac M. Localization of subunits D, E, and G in the yeast V-ATPase complex using cysteine-mediated cross-linking to subunit B. Biochemistry. 41: 11301-7. PMID 12220197 DOI: 10.1021/Bi0262449  0.314
2002 Kim S, Zagozdzon R, Meisler A, Baleja JD, Fu Y, Avraham S, Avraham H. Csk homologous kinase (CHK) and ErbB-2 interactions are directly coupled with CHK negative growth regulatory function in breast cancer. The Journal of Biological Chemistry. 277: 36465-70. PMID 12122014 DOI: 10.1074/Jbc.M206018200  0.381
2002 Arata Y, Baleja JD, Forgac M. Cysteine-directed cross-linking to subunit B suggests that subunit E forms part of the peripheral stalk of the vacuolar H+-ATPase. The Journal of Biological Chemistry. 277: 3357-63. PMID 11724797 DOI: 10.1074/Jbc.M109967200  0.338
2001 Kim S, Cullis DN, Feig LA, Baleja JD. Solution structure of the Reps1 EH domain and characterization of its binding to NPF target sequences Biochemistry. 40: 6776-6785. PMID 11389591 DOI: 10.1021/Bi002700M  0.43
2001 Be X, Hong Y, Wei J, Androphy EJ, Chen JJ, Baleja JD. Solution structure determination and mutational analysis of the papillomavirus E6 interacting peptide of E6AP. Biochemistry. 40: 1293-9. PMID 11170455 DOI: 10.1021/Bi0019592  0.449
2001 Baleja JD. Structure Determination of Membrane-Associated Proteins from Nuclear Magnetic Resonance Data Analytical Biochemistry. 288: 1-15. PMID 11141300 DOI: 10.1006/Abio.2000.4815  0.35
2000 Kim S, Dubelman AM, Goonesekera S, Feig LA, Baleja JD. Letter to the editor: 1H, 15N, and 13C NMR resonance assignments for the Epsl5 homology domain of Reps1 [4] Journal of Biomolecular Nmr. 18: 367-368. PMID 11200534 DOI: 10.1023/A:1026799229232  0.341
2000 Vasilyeva E, Liu Q, MacLeod KJ, Baleja JD, Forgac M. Cysteine scanning mutagenesis of the noncatalytic nucleotide binding site of the yeast V-ATPase Journal of Biological Chemistry. 275: 255-260. PMID 10617613 DOI: 10.1074/Jbc.275.1.255  0.346
1999 Veeraraghavan S, Mello CC, Androphy EJ, Baleja JD. Structural correlates for enhanced stability in the E2 DNA-binding domain from bovine papillomavirus. Biochemistry. 38: 16115-24. PMID 10587434 DOI: 10.1021/Bi991633X  0.478
1999 Volkert TL, Baleja JD, Kumamoto CA. A highly mobile C-terminal tail of the Escherichia coli protein export chaperone SecB. Biochemical and Biophysical Research Communications. 264: 949-54. PMID 10544036 DOI: 10.1006/Bbrc.1999.1590  0.421
1999 Rigby AC, Lucas-Meunier E, Kalume DE, Czerwiec E, Hambe B, Dahlqvist I, Fossier P, Baux G, Roepstorff P, Baleja JD, Furie BC, Furie B, Stenflo J. A conotoxin from Conus textile with unusual posttranslational modifications reduces presynaptic Ca2+ influx Proceedings of the National Academy of Sciences of the United States of America. 96: 5758-5763. PMID 10318957 DOI: 10.1073/Pnas.96.10.5758  0.359
1998 Veeraraghavan S, Mello CC, Lee KM, Androphy EJ, Baleja JD. 1H, 15N, and 13C NMR resonance assignments for the DNA-binding domain of the BPV-1 E2 protein. Journal of Biomolecular Nmr. 11: 457-8. PMID 9691287 DOI: 10.1023/A:1008237029912  0.412
1998 Veeraraghavan S, Baleja JD, Gilbert GE. Structure and topography of the membrane-binding C2 domain of factor VIII in the presence of dodecylphosphocholine micelles. Biochemical Journal. 332: 549-555. PMID 9601086 DOI: 10.1042/Bj3320549  0.44
1998 Chen JJ, Hong Y, Rustamzadeh E, Baleja JD, Androphy EJ. Identification of an α helical motif sufficient for association with papillomavirus E6 Journal of Biological Chemistry. 273: 13537-13544. PMID 9593689 DOI: 10.1074/Jbc.273.22.13537  0.424
1998 Roy RS, Kim S, Baleja JD, Walsh CT. Role of the microcin B17 propeptide in substrate recognition: solution structure and mutational analysis of McbA1-26. Chemistry & Biology. 5: 217-28. PMID 9545435 DOI: 10.1016/S1074-5521(98)90635-4  0.352
1998 MacLeod KJ, Vasilyeva E, Baleja JD, Forgac M. Mutational analysis of the nucleotide binding sites of the yeast vacuolar proton-translocating ATPase Journal of Biological Chemistry. 273: 150-156. PMID 9417059 DOI: 10.1074/Jbc.273.1.150  0.355
1998 Chen JJ, Hong Y, Baleja J, Androphy EJ. Identification and structure of the E6BP peptide that binds the papillomavirus E6 proteins Journal of Dermatological Science. 16. DOI: 10.1016/S0923-1811(98)83073-9  0.404
1997 Baleja JD, Thanabal V, Wagner G. Refined solution structure of the DNA-binding domain of GAL4 and use of 3J(113Cd,1H) in structure determination. Journal of Biomolecular Nmr. 10: 397-401. PMID 9460244 DOI: 10.1023/A:1018332327565  0.328
1997 Rigby AC, Baleja JD, Li L, Pedersen LG, Furie BC, Furie B. Role of gamma-carboxyglutamic acid in the calcium-induced structural transition of conantokin G, a conotoxin from the marine snail Conus geographus. Biochemistry. 36: 15677-84. PMID 9398296 DOI: 10.1021/Bi9718550  0.352
1997 Rigby AC, Baleja JD, Furie BC, Furie B. Three-dimensional structure of a gamma-carboxyglutamic acid-containing conotoxin, conantokin G, from the marine snail Conus geographus: the metal-free conformer. Biochemistry. 36: 6906-6914. PMID 9188685 DOI: 10.1021/Bi970321W  0.389
1997 Li L, Darden TA, Freedman SJ, Furie BC, Furie B, Baleja JD, Smith H, Hiskey RG, Pedersen LG. Refinement of the NMR solution structure of the gamma-carboxyglutamic acid domain of coagulation factor IX using molecular dynamics simulation with initial Ca2+ positions determined by a genetic algorithm. Biochemistry. 36: 2132-8. PMID 9047312 DOI: 10.1021/Bi962250R  0.323
1996 Freedman SJ, Sanford DG, Bachovchin WW, Furie BC, Baleja JD, Furie B. Structure and function of the epidermal growth factor domain of P-selectin. Biochemistry. 35: 13733-44. PMID 8901515 DOI: 10.1021/Bi9610257  0.447
1996 Freedman SJ, Blostein MD, Baleja JD, Jacobs M, Furie BC, Furie B. Identification of the phospholipid binding site in the vitamin K-dependent blood coagulation protein factor IX. The Journal of Biological Chemistry. 271: 16227-36. PMID 8663165 DOI: 10.1074/Jbc.271.27.16227  0.438
1996 Baleja JD, Freedman SJ, Furie BC, Furie B. NMR structures for the membrane binding gla domain of blood coagulation factor IX Techniques in Protein Chemistry. 7: 131-138. DOI: 10.1016/S1080-8914(96)80017-2  0.407
1995 Gilbert GE, Baleja JD. Membrane-binding peptide from the C2 domain of factor VIII forms an amphipathic structure as determined by NMR spectroscopy. Biochemistry. 34: 3022-3031. PMID 7893714 DOI: 10.1021/Bi00009A033  0.434
1995 Lee KM, Androphy EJ, Baleja JD. A novel method for selective isotope labeling of bacterially expressed proteins. Journal of Biomolecular Nmr. 5: 93-96. PMID 7881274 DOI: 10.1007/Bf00227474  0.33
1995 Baleja JD, Sykes BD. A nuclear magnetic resonance study of the DNA-binding affinity of Cro repressor protein stabilized by a disulfide bond. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 72: 95-108. PMID 7818854 DOI: 10.1139/O94-016  0.393
1995 Freedman SJ, Furie BC, Furie B, Baleja JD. Structure of the metal-free gamma-carboxyglutamic acid-rich membrane binding region of factor IX by two-dimensional NMR spectroscopy. The Journal of Biological Chemistry. 270: 7980-7. PMID 7713897 DOI: 10.1074/Jbc.270.14.7980  0.434
1995 Freedman SJ, Furie BC, Furie B, Baleja JD. Structure of the calcium ion-bound gamma-carboxyglutamic acid-rich domain of factor IX. Biochemistry. 34: 12126-37. PMID 7547952 DOI: 10.1021/Bi00038A005  0.43
1994 Baleja JD, Mau T, Wagner G. Recognition of DNA by GAL4 in solution: use of a monomeric protein-DNA complex for study by NMR. Biochemistry. 33: 3071-3078. PMID 8130221 DOI: 10.1021/Bi00176A041  0.376
1993 Baleja JD, Buchko GW, Weinfeld M, Sykes BD. Characterization of gamma-radiation induced decomposition products of thymidine-containing dinucleoside monophosphates by nuclear magnetic resonance spectroscopy. Journal of Biomolecular Structure & Dynamics. 10: 747-62. PMID 8466677 DOI: 10.1080/07391102.1993.10508004  0.301
1992 Baleja JD, Marmorstein R, Harrison SC, Wagner G. Solution structure of the DNA-binding domain of Cd2-GAL4 from S. cerevisiae. Nature. 356: 450-3. PMID 1557130 DOI: 10.1038/356450A0  0.429
1992 Mau T, Baleja JD, Wagner G. Effects of DNA binding and metal substitution on the dynamics of the GAL4 DNA-binding domain as studied by amide proton exchange. Protein Science. 1: 1403-1412. PMID 1303761 DOI: 10.1002/Pro.5560011102  0.37
1992 Baleja JD. NOE-based structure determination without the use of NMR-derived interproton distances Journal of Magnetic Resonance. 96: 619-623. DOI: 10.1016/0022-2364(92)90349-C  0.314
1991 Baleja JD, Sykes BD. Comparison of the structures of operator DNA free and in complex with lambda repressor. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 69: 202-5. PMID 2031722 DOI: 10.1139/O91-030  0.341
1990 Baleja JD, Germann MW, Van de Sande JH, Sykes BD. Solution conformation of purine-pyrimidine DNA octamers using nuclear magnetic resonance, restrained molecular dynamics and NOE-based refinement Journal of Molecular Biology. 215: 411-428. PMID 2231713 DOI: 10.1016/S0022-2836(05)80361-4  0.339
1990 Baleja JD, Pon RT, Sykes BD. Solution structure of phage lambda half-operator DNA by use of NMR, restrained molecular dynamics, and NOE-based refinement. Biochemistry. 29: 4828-39. PMID 2141998 DOI: 10.1021/Bi00472A012  0.354
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