Yuanpeng J. Huang, Ph.D. - Publications

Affiliations: 
2001 Rutgers University, New Brunswick, United States 
Area:
Biochemistry, Computer Science, Biomedical Engineering

42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Aramini JM, Vorobiev SM, Tuberty LM, Janjua H, Campbell ET, Seetharaman J, Su M, Huang YJ, Acton TB, Xiao R, Tong L, Montelione GT. The RAS-Binding Domain of Human BRAF Protein Serine/Threonine Kinase Exhibits Allosteric Conformational Changes upon Binding HRAS. Structure (London, England : 1993). 23: 1382-93. PMID 26165597 DOI: 10.1016/j.str.2015.06.003  0.8
2015 Tang Y, Huang YJ, Hopf TA, Sander C, Marks DS, Montelione GT. Protein structure determination by combining sparse NMR data with evolutionary couplings. Nature Methods. PMID 26121406 DOI: 10.1038/nmeth.3455  0.6
2015 Huang YJ, Mao B, Xu F, Montelione GT. Guiding automated NMR structure determination using a global optimization metric, the NMR DP score. Journal of Biomolecular Nmr. 62: 439-51. PMID 26081575 DOI: 10.1007/s10858-015-9955-2  0.6
2015 Pulavarti SV, Eletsky A, Huang YJ, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T. Polypeptide backbone, C(β) and methyl group resonance assignments of the 24 kDa plectin repeat domain 6 from human protein plectin. Biomolecular Nmr Assignments. 9: 135-8. PMID 24722902 DOI: 10.1007/s12104-014-9559-x  0.8
2014 Pulavarti SV, Huang YJ, Pederson K, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Szyperski T. Solution NMR structures of immunoglobulin-like domains 7 and 12 from obscurin-like protein 1 contribute to the structural coverage of the Human Cancer Protein Interaction Network. Journal of Structural and Functional Genomics. 15: 209-14. PMID 24989974 DOI: 10.1007/s10969-014-9185-y  0.6
2014 Xu X, Pulavarti SV, Eletsky A, Huang YJ, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T. Solution NMR structures of homeodomains from human proteins ALX4, ZHX1, and CASP8AP2 contribute to the structural coverage of the Human Cancer Protein Interaction Network. Journal of Structural and Functional Genomics. 15: 201-7. PMID 24941917 DOI: 10.1007/s10969-014-9184-z  0.8
2014 Snyder DA, Grullon J, Huang YJ, Tejero R, Montelione GT. The expanded FindCore method for identification of a core atom set for assessment of protein structure prediction. Proteins. 82: 219-30. PMID 24327305 DOI: 10.1002/prot.24490  0.6
2014 Huang YJ, Mao B, Aramini JM, Montelione GT. Assessment of template-based protein structure predictions in CASP10. Proteins. 82: 43-56. PMID 24323734 DOI: 10.1002/prot.24488  0.8
2014 Huang YJ, Acton TB, Montelione GT. DisMeta: a meta server for construct design and optimization. Methods in Molecular Biology (Clifton, N.J.). 1091: 3-16. PMID 24203321 DOI: 10.1007/978-1-62703-691-7_1  0.8
2014 Taylor TJ, Tai CH, Huang YJ, Block J, Bai H, Kryshtafovych A, Montelione GT, Lee B. Definition and classification of evaluation units for CASP10. Proteins. 82: 14-25. PMID 24123179 DOI: 10.1002/prot.24434  0.6
2013 Kim DM, Zheng H, Huang YJ, Montelione GT, Hunt JF. ATPase active-site electrostatic interactions control the global conformation of the 100 kDa SecA translocase. Journal of the American Chemical Society. 135: 2999-3010. PMID 23167435 DOI: 10.1021/ja306361q  0.6
2012 Aziz A, Hess JF, Budamagunta MS, Voss JC, Kuzin AP, Huang YJ, Xiao R, Montelione GT, FitzGerald PG, Hunt JF. The structure of vimentin linker 1 and rod 1B domains characterized by site-directed spin-labeling electron paramagnetic resonance (SDSL-EPR) and X-ray crystallography. The Journal of Biological Chemistry. 287: 28349-61. PMID 22740688 DOI: 10.1074/jbc.M111.334011  0.6
2012 Huang YJ, Rosato A, Singh G, Montelione GT. RPF: a quality assessment tool for protein NMR structures. Nucleic Acids Research. 40: W542-6. PMID 22570414 DOI: 10.1093/nar/gks373  0.8
2012 Snyder DA, Aramini JM, Yu B, Huang YJ, Xiao R, Cort JR, Shastry R, Ma LC, Liu J, Rost B, Acton TB, Kennedy MA, Montelione GT. Solution NMR structure of the ribosomal protein RP-L35Ae from Pyrococcus furiosus. Proteins. 80: 1901-6. PMID 22422653 DOI: 10.1002/prot.24071  0.6
2012 Rosato A, Aramini JM, Arrowsmith C, Bagaria A, Baker D, Cavalli A, Doreleijers JF, Eletsky A, Giachetti A, Guerry P, Gutmanas A, Güntert P, He Y, Herrmann T, Huang YJ, et al. Blind testing of routine, fully automated determination of protein structures from NMR data. Structure (London, England : 1993). 20: 227-36. PMID 22325772 DOI: 10.1016/j.str.2012.01.002  0.6
2012 Bagaria A, Jaravine V, Huang YJ, Montelione GT, Güntert P. Protein structure validation by generalized linear model root-mean-square deviation prediction. Protein Science : a Publication of the Protein Society. 21: 229-38. PMID 22113924 DOI: 10.1002/pro.2007  0.8
2012 Vorobiev SM, Huang YJ, Seetharaman J, Xiao R, Acton TB, Montelione GT, Tong L. Human retinoblastoma binding protein 9, a serine hydrolase implicated in pancreatic cancers. Protein and Peptide Letters. 19: 194-7. PMID 21933118  0.8
2011 Zhang H, Constantine R, Vorobiev S, Chen Y, Seetharaman J, Huang YJ, Xiao R, Montelione GT, Gerstner CD, Davis MW, Inana G, Whitby FG, Jorgensen EM, Hill CP, Tong L, et al. UNC119 is required for G protein trafficking in sensory neurons. Nature Neuroscience. 14: 874-80. PMID 21642972 DOI: 10.1038/nn.2835  0.6
2011 Acton TB, Xiao R, Anderson S, Aramini J, Buchwald WA, Ciccosanti C, Conover K, Everett J, Hamilton K, Huang YJ, Janjua H, Kornhaber G, Lau J, Lee DY, Liu G, et al. Preparation of protein samples for NMR structure, function, and small-molecule screening studies. Methods in Enzymology. 493: 21-60. PMID 21371586 DOI: 10.1016/B978-0-12-381274-2.00002-9  0.6
2010 Xiao R, Anderson S, Aramini J, Belote R, Buchwald WA, Ciccosanti C, Conover K, Everett JK, Hamilton K, Huang YJ, Janjua H, Jiang M, Kornhaber GJ, Lee DY, Locke JY, et al. The high-throughput protein sample production platform of the Northeast Structural Genomics Consortium. Journal of Structural Biology. 172: 21-33. PMID 20688167 DOI: 10.1016/j.jsb.2010.07.011  0.6
2010 Liu G, Huang YJ, Xiao R, Wang D, Acton TB, Montelione GT. Solution NMR structure of the ARID domain of human AT-rich interactive domain-containing protein 3A: a human cancer protein interaction network target. Proteins. 78: 2170-5. PMID 20455271 DOI: 10.1002/prot.22718  0.8
2010 Liu G, Huang YJ, Xiao R, Wang D, Acton TB, Montelione GT. NMR structure of F-actin-binding domain of Arg/Abl2 from Homo sapiens. Proteins. 78: 1326-30. PMID 20077570 DOI: 10.1002/prot.22656  0.8
2010 Raman S, Huang YJ, Mao B, Rossi P, Aramini JM, Liu G, Montelione GT, Baker D. Accurate automated protein NMR structure determination using unassigned NOESY data. Journal of the American Chemical Society. 132: 202-7. PMID 20000319 DOI: 10.1021/ja905934c  0.8
2010 Rossi P, Swapna GV, Huang YJ, Aramini JM, Anklin C, Conover K, Hamilton K, Xiao R, Acton TB, Ertekin A, Everett JK, Montelione GT. A microscale protein NMR sample screening pipeline. Journal of Biomolecular Nmr. 46: 11-22. PMID 19915800 DOI: 10.1007/s10858-009-9386-z  0.6
2009 Rosato A, Bagaria A, Baker D, Bardiaux B, Cavalli A, Doreleijers JF, Giachetti A, Guerry P, Güntert P, Herrmann T, Huang YJ, Jonker HR, Mao B, Malliavin TE, Montelione GT, et al. CASD-NMR: critical assessment of automated structure determination by NMR. Nature Methods. 6: 625-6. PMID 19718014 DOI: 10.1038/nmeth0909-625  0.6
2009 Sharma S, Zheng H, Huang YJ, Ertekin A, Hamuro Y, Rossi P, Tejero R, Acton TB, Xiao R, Jiang M, Zhao L, Ma LC, Swapna GV, Aramini JM, Montelione GT. Construct optimization for protein NMR structure analysis using amide hydrogen/deuterium exchange mass spectrometry. Proteins. 76: 882-94. PMID 19306341 DOI: 10.1002/prot.22394  0.8
2009 Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, Dunbrack RL, Fidelis K, Fiser A, Godzik A, Huang YJ, et al. Outcome of a workshop on applications of protein models in biomedical research. Structure (London, England : 1993). 17: 151-9. PMID 19217386 DOI: 10.1016/j.str.2008.12.014  0.6
2009 Liu G, Forouhar F, Eletsky A, Atreya HS, Aramini JM, Xiao R, Huang YJ, Abashidze M, Seetharaman J, Liu J, Rost B, Acton T, Montelione GT, Hunt JF, Szyperski T. NMR and X-RAY structures of human E2-like ubiquitin-fold modifier conjugating enzyme 1 (UFC1) reveal structural and functional conservation in the metazoan UFM1-UBA5-UFC1 ubiquination pathway. Journal of Structural and Functional Genomics. 10: 127-36. PMID 19101823 DOI: 10.1007/s10969-008-9054-7  0.6
2009 Vorobiev SM, Su M, Seetharaman J, Huang YJ, Chen CX, Maglaqui M, Janjua H, Proudfoot M, Yakunin A, Xiao R, Acton TB, Montelione GT, Tong L. Crystal structure of human retinoblastoma binding protein 9. Proteins. 74: 526-9. PMID 19004028 DOI: 10.1002/prot.22278  0.8
2008 Aramini JM, Rossi P, Huang YJ, Zhao L, Jiang M, Maglaqui M, Xiao R, Locke J, Nair R, Rost B, Acton TB, Inouye M, Montelione GT. Solution NMR structure of the NlpC/P60 domain of lipoprotein Spr from Escherichia coli: structural evidence for a novel cysteine peptidase catalytic triad. Biochemistry. 47: 9715-7. PMID 18715016 DOI: 10.1021/bi8010779  0.6
2008 Aramini JM, Sharma S, Huang YJ, Swapna GV, Ho CK, Shetty K, Cunningham K, Ma LC, Zhao L, Owens LA, Jiang M, Xiao R, Liu J, Baran MC, Acton TB, et al. Solution NMR structure of the SOS response protein YnzC from Bacillus subtilis. Proteins. 72: 526-30. PMID 18431750 DOI: 10.1002/prot.22064  0.6
2008 Wu B, Yee A, Huang YJ, Ramelot TA, Cort JR, Semesi A, Jung JW, Lee W, Montelione GT, Kennedy MA, Arrowsmith CH. The solution structure of ribosomal protein S17E from Methanobacterium thermoautotrophicum: a structural homolog of the FF domain. Protein Science : a Publication of the Protein Society. 17: 583-8. PMID 18218711 DOI: 10.1110/ps.073272208  0.8
2007 Lu LJ, Sboner A, Huang YJ, Lu HX, Gianoulis TA, Yip KY, Kim PM, Montelione GT, Gerstein MB. Comparing classical pathways and modern networks: towards the development of an edge ontology. Trends in Biochemical Sciences. 32: 320-31. PMID 17583513 DOI: 10.1016/j.tibs.2007.06.003  0.6
2007 Aramini JM, Huang YJ, Swapna GV, Cort JR, Rajan PK, Xiao R, Shastry R, Acton TB, Liu J, Rost B, Kennedy MA, Montelione GT. Solution NMR structure of Escherichia coli ytfP expands the structural coverage of the UPF0131 protein domain family. Proteins. 68: 789-95. PMID 17523190 DOI: 10.1002/prot.21450  0.6
2005 Aramini JM, Swapna GV, Huang YJ, Rajan PK, Xiao R, Shastry R, Acton TB, Cort JR, Kennedy MA, Montelione GT. 1H, 13C, and 15N resonance assignments for Escherichia coli ytfP, a member of the broadly conserved UPF0131 protein domain family. Journal of Biomolecular Nmr. 33: 197. PMID 16331424 DOI: 10.1007/s10858-005-2597-z  0.8
2005 Huang YJ, Montelione GT. Structural biology: proteins flex to function. Nature. 438: 36-7. PMID 16267540 DOI: 10.1038/438036a  0.8
2005 Powers R, Mirkovic N, Goldsmith-Fischman S, Acton TB, Chiang Y, Huang YJ, Ma L, Rajan PK, Cort JR, Kennedy MA, Liu J, Rost B, Honig B, Murray D, Montelione GT. Solution structure of Archaeglobus fulgidis peptidyl-tRNA hydrolase (Pth2) provides evidence for an extensive conserved family of Pth2 enzymes in archea, bacteria, and eukaryotes. Protein Science : a Publication of the Protein Society. 14: 2849-61. PMID 16251366 DOI: 10.1110/ps.051666705  0.8
2005 Snyder DA, Bhattacharya A, Huang YJ, Montelione GT. Assessing precision and accuracy of protein structures derived from NMR data. Proteins. 59: 655-61. PMID 15822105 DOI: 10.1002/prot.20499  0.8
2005 Huang YJ, Powers R, Montelione GT. Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics. Journal of the American Chemical Society. 127: 1665-74. PMID 15701001 DOI: 10.1021/ja047109h  0.8
2004 Baran MC, Huang YJ, Moseley HN, Montelione GT. Automated analysis of protein NMR assignments and structures. Chemical Reviews. 104: 3541-56. PMID 15303826 DOI: 10.1021/cr030408p  0.8
2003 Aramini JM, Huang YJ, Cort JR, Goldsmith-Fischman S, Xiao R, Shih LY, Ho CK, Liu J, Rost B, Honig B, Kennedy MA, Acton TB, Montelione GT. Solution NMR structure of the 30S ribosomal protein S28E from Pyrococcus horikoshii. Protein Science : a Publication of the Protein Society. 12: 2823-30. PMID 14627742 DOI: 10.1110/ps.03359003  0.8
2003 Zheng D, Huang YJ, Moseley HN, Xiao R, Aramini J, Swapna GV, Montelione GT. Automated protein fold determination using a minimal NMR constraint strategy. Protein Science : a Publication of the Protein Society. 12: 1232-46. PMID 12761394 DOI: 10.1110/ps.0300203  0.8
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