Year |
Citation |
Score |
2021 |
Cohen I, Bar C, Liu H, Valdes VJ, Zhao D, Galbo PM, Silva JM, Koseki H, Zheng D, Ezhkova E. Polycomb complexes redundantly maintain epidermal stem cell identity during development. Genes & Development. PMID 33602871 DOI: 10.1101/gad.345363.120 |
0.301 |
|
2020 |
Adam RC, Yang H, Ge Y, Infarinato NR, Gur-Cohen S, Miao Y, Wang P, Zhao Y, Lu CP, Kim JE, Ko JY, Paik SS, Gronostajski RM, Kim J, Krueger JG, ... Zheng D, et al. NFI transcription factors provide chromatin access to maintain stem cell identity while preventing unintended lineage fate choices. Nature Cell Biology. PMID 32393888 DOI: 10.1038/S41556-020-0513-0 |
0.391 |
|
2020 |
Liu H, Barnes J, Pedrosa E, Herman NS, Salas F, Wang P, Zheng D, Lachman HM. Transcriptome analysis of neural progenitor cells derived from Lowe syndrome induced pluripotent stem cells: identification of candidate genes for the neurodevelopmental and eye manifestations. Journal of Neurodevelopmental Disorders. 12: 14. PMID 32393163 DOI: 10.1186/S11689-020-09317-2 |
0.346 |
|
2019 |
Martynova E, Zhao Y, Xie Q, Zheng D, Cvekl A. Transcriptomic analysis and novel insights into lens fibre cell differentiation regulated by Gata3. Open Biology. 9: 190220. PMID 31847788 DOI: 10.1098/Rsob.190220 |
0.397 |
|
2019 |
Ji Z, Kiparaki M, Folgado V, Kumar A, Blanco J, Rimesso G, Chuen J, Liu Y, Zheng D, Baker NE. Drosophila RpS12 controls translation, growth, and cell competition through Xrp1. Plos Genetics. 15: e1008513. PMID 31841522 DOI: 10.1371/Journal.Pgen.1008513 |
0.377 |
|
2019 |
Ito K, Lee J, Chrysanthou S, Zhao Y, Josephs K, Sato H, Teruya-Feldstein J, Zheng D, Dawlaty MM, Ito K. Non-catalytic Roles of Tet2 Are Essential to Regulate Hematopoietic Stem and Progenitor Cell Homeostasis. Cell Reports. 28: 2480-2490.e4. PMID 31484061 DOI: 10.1016/J.Celrep.2019.07.094 |
0.352 |
|
2019 |
Ravichandran M, Lei R, Tang Q, Zhao Y, Lee J, Ma L, Chrysanthou S, Lorton BM, Cvekl A, Shechter D, Zheng D, Dawlaty MM. Rinf Regulates Pluripotency Network Genes and Tet Enzymes in Embryonic Stem Cells. Cell Reports. 28: 1993-2003.e5. PMID 31433977 DOI: 10.1016/J.Celrep.2019.07.080 |
0.421 |
|
2019 |
Ren Z, Ahn JH, Liu H, Tsai YH, Bhanu NV, Koss B, Allison DF, Ma A, Storey AJ, Wang P, Mackintosh SG, Edmondson RD, Groen RWJ, Martens AC, Garcia BA, ... ... Zheng D, et al. PHF19 promotes multiple myeloma tumorigenicity through PRC2 activation. Blood. PMID 31383640 DOI: 10.1182/Blood.2019000578 |
0.388 |
|
2019 |
Liu Y, Lu P, Wang Y, Morrow BE, Zhou B, Zheng D. Spatiotemporal Gene Coexpression and Regulation in Mouse Cardiomyocytes of Early Cardiac Morphogenesis. Journal of the American Heart Association. 8: e012941. PMID 31322043 DOI: 10.1161/Jaha.119.012941 |
0.38 |
|
2019 |
Bar C, Cohen I, Zhao D, Pothula V, Litskevitch A, Koseki H, Zheng D, Ezhkova E. Polycomb Repressive Complex 1 Controls Maintenance of Fungiform Papillae by Repressing Sonic Hedgehog Expression. Cell Reports. 28: 257-266.e5. PMID 31269445 DOI: 10.1016/J.Celrep.2019.06.011 |
0.384 |
|
2019 |
Zhao Y, Zheng D, Cvekl A. Profiling of chromatin accessibility and identification of general cis-regulatory mechanisms that control two ocular lens differentiation pathways. Epigenetics & Chromatin. 12: 27. PMID 31053165 DOI: 10.1186/S13072-019-0272-Y |
0.404 |
|
2019 |
Limi S, Zhao Y, Guo P, Lopez-Jones M, Zheng D, Singer RH, Skoultchi AI, Cvekl A. Bidirectional Analysis of Cryba4-Crybb1 Nascent Transcription and Nuclear Accumulation of Crybb3 mRNAs in Lens Fibers. Investigative Ophthalmology & Visual Science. 60: 234-244. PMID 30646012 DOI: 10.1167/Iovs.18-25921 |
0.387 |
|
2019 |
Lee E, Wongvipat J, Choi D, Wang P, Lee YS, Zheng D, Watson PA, Gopalan A, Sawyers CL. amplifies androgen receptor output in human prostate cancer and contributes to antiandrogen resistance. Elife. 8. PMID 30644358 DOI: 10.7554/Elife.41913 |
0.328 |
|
2019 |
Wang P, Mokhtari R, Pedrosa E, Zheng D, Lachman H. Transcriptome Analysis Of Wnt7A-Mediated Gene Expression In Human Neural Progenitor Cells Derived From Control And Chd8 Haploinsufficient Induced Pluripotent Stem Cells European Neuropsychopharmacology. 29. DOI: 10.1016/J.Euroneuro.2017.08.203 |
0.407 |
|
2018 |
Cohen I, Zhao D, Menon G, Nakayama M, Koseki H, Zheng D, Ezhkova E. PRC1 preserves epidermal tissue integrity independently of PRC2. Genes & Development. PMID 30567998 DOI: 10.1101/Gad.319939.118 |
0.372 |
|
2018 |
Diacou R, Zhao Y, Zheng D, Cvekl A, Liu W. Six3 and Six6 Are Jointly Required for the Maintenance of Multipotent Retinal Progenitors through Both Positive and Negative Regulation. Cell Reports. 25: 2510-2523.e4. PMID 30485816 DOI: 10.1016/J.Celrep.2018.10.106 |
0.363 |
|
2018 |
Zhao Y, Wilmarth PA, Cheng C, Limi S, Fowler VM, Zheng D, David LL, Cvekl A. Proteome-transcriptome analysis and proteome remodeling in mouse lens epithelium and fibers. Experimental Eye Research. PMID 30359574 DOI: 10.1016/J.Exer.2018.10.011 |
0.336 |
|
2018 |
Zhao Y, Zheng D, Cvekl A. A comprehensive spatial-temporal transcriptomic analysis of differentiating nascent mouse lens epithelial and fiber cells. Experimental Eye Research. PMID 29883638 DOI: 10.1016/J.Exer.2018.06.004 |
0.37 |
|
2018 |
Cohen I, Zhao D, Bar C, Valdes VJ, Dauber-Decker KL, Nguyen MB, Nakayama M, Rendl M, Bickmore WA, Koseki H, Zheng D, Ezhkova E. PRC1 Fine-tunes Gene Repression and Activation to Safeguard Skin Development and Stem Cell Specification. Cell Stem Cell. 22: 726-739.e7. PMID 29727681 DOI: 10.1016/J.Stem.2018.04.005 |
0.391 |
|
2018 |
Xu B, Cai L, Butler JM, Chen D, Lu X, Allison DF, Lu R, Rafii S, Parker JS, Zheng D, Wang GG. The Chromatin Remodeler BPTF Activates a Stemness Gene-Expression Program Essential for the Maintenance of Adult Hematopoietic Stem Cells. Stem Cell Reports. PMID 29456179 DOI: 10.1016/J.Stemcr.2018.01.020 |
0.386 |
|
2018 |
Adam RC, Yang H, Ge Y, Lien WH, Wang P, Zhao Y, Polak L, Levorse J, Baksh SC, Zheng D, Fuchs E. Temporal Layering of Signaling Effectors Drives Chromatin Remodeling during Hair Follicle Stem Cell Lineage Progression. Cell Stem Cell. PMID 29337183 DOI: 10.1016/J.Stem.2017.12.004 |
0.351 |
|
2018 |
Wang P, Zhao D, Lachman HM, Zheng D. Enriched expression of genes associated with autism spectrum disorders in human inhibitory neurons. Translational Psychiatry. 8: 13. PMID 29317598 DOI: 10.1038/S41398-017-0058-6 |
0.321 |
|
2018 |
Ran L, Chen Y, Wong WPE, Li D, Cao Z, Shukla S, Xie Y, Zheng D, Koche RP, Antonescu CR, Chen Y, Chi P. Abstract 3358: FOXF1 defines the core-regulatory circuitry in gastrointestinal stromal tumor (GIST) Cancer Research. 78: 3358-3358. DOI: 10.1158/1538-7445.Am2018-3358 |
0.341 |
|
2018 |
Cohen I, Zhao D, Zheng D, Ezhkova E. 1358 PRC1 fine-tunes gene repression and activation to safeguard skin epithelium development and stem cell specification Journal of Investigative Dermatology. 138. DOI: 10.1016/J.Jid.2018.03.1375 |
0.356 |
|
2017 |
Zhang D, Wang Y, Lu P, Wang P, Yuan X, Yan J, Cai C, Chang CP, Zheng D, Wu B, Zhou B. REST regulates the cell cycle for cardiac development and regeneration. Nature Communications. 8: 1979. PMID 29215012 DOI: 10.1038/S41467-017-02210-Y |
0.337 |
|
2017 |
Ran L, Chen Y, Sher J, Wong WPE, Murphy D, Zhang JQ, Li D, Deniz K, Sirota I, Cao Z, Wang S, Guan Y, Shukla S, Li KY, Chramiec A, ... ... Zheng D, et al. FOXF1 defines the core-regulatory circuitry in gastrointestinal stromal tumor (GIST). Cancer Discovery. PMID 29162563 DOI: 10.1158/2159-8290.Cd-17-0468 |
0.352 |
|
2017 |
Zhao D, Lin M, Pedrosa E, Lachman HM, Zheng D. Characteristics of allelic gene expression in human brain cells from single-cell RNA-seq data analysis. Bmc Genomics. 18: 860. PMID 29126398 DOI: 10.1186/S12864-017-4261-X |
0.359 |
|
2017 |
Seki Y, Suzuki M, Guo X, Glenn AS, Vuguin PM, Fiallo A, Du Q, Ko YA, Yu Y, Susztak K, Zheng D, Greally JM, Katz EB, Charron MJ. In Utero Exposure to a High-Fat Diet Programs Hepatic Hypermethylation and Gene Dysregulation and Development of Metabolic Syndrome in Male Mice. Endocrinology. 158: 2860-2872. PMID 28911167 DOI: 10.1210/En.2017-00334 |
0.344 |
|
2017 |
Cvekl A, Zhao Y, McGreal R, Xie Q, Gu X, Zheng D. Evolutionary Origins of Pax6 Control of Crystallin Genes. Genome Biology and Evolution. 9: 2075-2092. PMID 28903537 DOI: 10.1093/Gbe/Evx153 |
0.372 |
|
2017 |
Cavalheiro GR, Matos-Rodrigues GE, Zhao Y, Gomes AL, Anand D, Predes D, de Lima S, Abreu JG, Zheng D, Lachke SA, Cvekl A, Martins RAP. N-myc regulates growth and fiber cell differentiation in lens development. Developmental Biology. PMID 28716713 DOI: 10.1016/J.Ydbio.2017.07.002 |
0.358 |
|
2017 |
Bose R, Karthaus WR, Armenia J, Abida W, Iaquinta PJ, Zhang Z, Wongvipat J, Wasmuth EV, Shah N, Sullivan PS, Doran MG, Wang P, Patruno A, Zhao Y, ... Zheng D, et al. ERF mutations reveal a balance of ETS factors controlling prostate oncogenesis. Nature. PMID 28614298 DOI: 10.1038/Nature22820 |
0.329 |
|
2017 |
Zhao D, Mokhtari R, Pedrosa E, Birnbaum R, Zheng D, Lachman HM. Transcriptome analysis of microglia in a mouse model of Rett syndrome: differential expression of genes associated with microglia/macrophage activation and cellular stress. Molecular Autism. 8: 17. PMID 28367307 DOI: 10.1186/S13229-017-0134-Z |
0.37 |
|
2017 |
Racedo SE, Hasten E, Lin M, Devakanmalai GS, Guo T, Ozbudak EM, Cai CL, Zheng D, Morrow BE. Reduced dosage of β-catenin provides significant rescue of cardiac outflow tract anomalies in a Tbx1 conditional null mouse model of 22q11.2 deletion syndrome. Plos Genetics. 13: e1006687. PMID 28346476 DOI: 10.1371/Journal.Pgen.1006687 |
0.316 |
|
2017 |
Wang P, Mokhtari R, Pedrosa E, Kirschenbaum M, Bayrak C, Zheng D, Lachman HM. CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in cerebral organoids derived from iPS cells. Molecular Autism. 8: 11. PMID 28321286 DOI: 10.1186/S13229-017-0124-1 |
0.409 |
|
2017 |
Shen Y, Stanislauskas M, Li G, Zheng D, Liu L. Epigenetic and genetic dissections of UV-induced global gene dysregulation in skin cells through multi-omics analyses. Scientific Reports. 7: 42646. PMID 28211524 DOI: 10.1038/Srep42646 |
0.354 |
|
2017 |
Cvekl A, Limi S, Zhao Y, McGreal R, Zheng D. Transcriptional dynamics, denucleation, and gene regulation in embryonic lens development Acta Ophthalmologica. 95. DOI: 10.1111/J.1755-3768.2017.01165 |
0.377 |
|
2017 |
Cohen I, Valdes J, Dauber K, Bar C, Zhao D, Zheng D, Bickmore W, Koseki H, Ezhkova E. 864 Catalytic-dependent and -independent activities of Polycomb repressive complex 1 differentially regulate skin stem cell specification Journal of Investigative Dermatology. 137. DOI: 10.1016/J.Jid.2017.02.890 |
0.328 |
|
2016 |
Zhang D, Wu B, Wang P, Wang Y, Lu P, Nechiporuk T, Floss T, Greally JM, Zheng D, Zhou B. Non-CpG methylation by DNMT3B facilitates REST binding and gene silencing in developing mouse hearts. Nucleic Acids Research. PMID 27956497 DOI: 10.1093/Nar/Gkw1258 |
0.37 |
|
2016 |
Zhu Z, Li C, Zeng Y, Ding J, Qu Z, Gu J, Ge L, Tang F, Huang X, Zhou C, Wang P, Zheng D, Jin Y. PHB Associates with the HIRA Complex to Control an Epigenetic-Metabolic Circuit in Human ESCs. Cell Stem Cell. PMID 27939217 DOI: 10.1016/J.Stem.2016.11.002 |
0.383 |
|
2016 |
Lin M, Pedrosa E, Hrabovsky A, Chen J, Puliafito BR, Gilbert SR, Zheng D, Lachman HM. Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion. Bmc Systems Biology. 10: 105. PMID 27846841 DOI: 10.1186/S12918-016-0366-0 |
0.32 |
|
2016 |
Sun J, Zhao Y, McGreal R, Cohen-Tayar Y, Rockowitz S, Wilczek C, Ashery-Padan R, Shechter D, Zheng D, Cvekl A. Pax6 associates with H3K4-specific histone methyltransferases Mll1, Mll2, and Set1a and regulates H3K4 methylation at promoters and enhancers. Epigenetics & Chromatin. 9: 37. PMID 27617035 DOI: 10.1186/S13072-016-0087-Z |
0.347 |
|
2016 |
Choo SW, Rayko M, Tan TK, Hari R, Komissarov A, Wee WY, Yurchenko A, Kliver S, Tamazian G, Antunes A, Wilson RK, Warren WC, Koepfli KP, Minx P, Krasheninnikova K, ... ... Zheng D, et al. Pangolin genomes and the evolution of mammalian scales and immunity. Genome Research. PMID 27510566 DOI: 10.1101/Gr.203521.115 |
0.3 |
|
2016 |
Perdigoto CN, Dauber KL, Bar C, Tsai PC, Valdes VJ, Cohen I, Santoriello FJ, Zhao D, Zheng D, Hsu YC, Ezhkova E. Polycomb-Mediated Repression and Sonic Hedgehog Signaling Interact to Regulate Merkel Cell Specification during Skin Development. Plos Genetics. 12: e1006151. PMID 27414999 DOI: 10.1371/Journal.Pgen.1006151 |
0.368 |
|
2016 |
Lu R, Wang P, Parton T, Zhou Y, Chrysovergis K, Rockowitz S, Chen WY, Abdel-Wahab O, Wade PA, Zheng D, Wang GG. Epigenetic Perturbations by Arg882-Mutated DNMT3A Potentiate Aberrant Stem Cell Gene-Expression Program and Acute Leukemia Development. Cancer Cell. PMID 27344947 DOI: 10.1016/J.Ccell.2016.05.008 |
0.374 |
|
2016 |
Yuan Z, Claros CS, Suzuki M, Maggi EC, Kaner JD, Kinstlinger N, Gorecka J, Quinn TJ, Geha R, Corn A, Pastoriza J, Jing Q, Adem A, Wu H, Alemu G, ... ... Zheng D, et al. Loss of MEN1 activates DNMT1 implicating DNA hypermethylation as a driver of MEN1 tumorigenesis. Oncotarget. PMID 26871472 DOI: 10.18632/Oncotarget.7279 |
0.319 |
|
2016 |
Nebel RA, Zhao D, Pedrosa E, Kirschen J, Lachman HM, Zheng D, Abrahams BS. Reduced CYFIP1 in Human Neural Progenitors Results in Dysregulation of Schizophrenia and Epilepsy Gene Networks. Plos One. 11: e0148039. PMID 26824476 DOI: 10.1371/Journal.Pone.0148039 |
0.353 |
|
2016 |
Yang H, Schramek D, Adam R, Levorse J, Keyes B, Wang P, Zheng D, Fuchs E. Abstract 881: Dissecting chromatin dynamics in malignant progression Cancer Research. 76: 881-881. DOI: 10.1158/1538-7445.Am2016-881 |
0.416 |
|
2016 |
Cvekl A, Limi S, Zhao Y, McGreal R, Xie Q, Zheng D. The α
A-crystallin gene expression in differentiating lens fiber cells, FGF signaling, and transcriptional factories Acta Ophthalmologica. 94. DOI: 10.1111/J.1755-3768.2016.0393 |
0.34 |
|
2015 |
Lin M, Lachman HM, Zheng D. Transcriptomics analysis of iPSC-derived neurons and modeling of neuropsychiatric disorders. Molecular and Cellular Neurosciences. PMID 26631648 DOI: 10.1016/J.Mcn.2015.11.009 |
0.373 |
|
2015 |
Yang H, Schramek D, Adam RC, Keyes BE, Wang P, Zheng D, Fuchs E. ETS family transcriptional regulators drive chromatin dynamics and malignancy in squamous cell carcinomas. Elife. 4. PMID 26590320 DOI: 10.7554/Elife.10870 |
0.405 |
|
2015 |
White RR, Milholland B, MacRae SL, Lin M, Zheng D, Vijg J. Comprehensive transcriptional landscape of aging mouse liver. Bmc Genomics. 16: 899. PMID 26541291 DOI: 10.1186/S12864-015-2061-8 |
0.308 |
|
2015 |
Wang P, Lin M, Pedrosa E, Hrabovsky A, Zhang Z, Guo W, Lachman HM, Zheng D. CRISPR/Cas9-mediated heterozygous knockout of the autism gene CHD8 and characterization of its transcriptional networks in neurodevelopment. Molecular Autism. 6: 55. PMID 26491539 DOI: 10.1186/S13229-015-0048-6 |
0.415 |
|
2015 |
Wiesner T, Lee W, Obenauf AC, Ran L, Murali R, Zhang QF, Wong EW, Hu W, Scott SN, Shah RH, Landa I, Button J, Lailler N, Sboner A, Gao D, ... ... Zheng D, et al. Alternative transcription initiation leads to expression of a novel ALK isoform in cancer. Nature. PMID 26444240 DOI: 10.1038/Nature15258 |
0.365 |
|
2015 |
Sun J, Rockowitz S, Xie Q, Ashery-Padan R, Zheng D, Cvekl A. Identification of in vivo DNA-binding mechanisms of Pax6 and reconstruction of Pax6-dependent gene regulatory networks during forebrain and lens development. Nucleic Acids Research. 43: 6827-46. PMID 26138486 DOI: 10.1093/Nar/Gkv589 |
0.394 |
|
2015 |
Rockowitz S, Zheng D. Significant expansion of the REST/NRSF cistrome in human versus mouse embryonic stem cells: potential implications for neural development. Nucleic Acids Research. 43: 5730-43. PMID 25990720 DOI: 10.1093/Nar/Gkv514 |
0.404 |
|
2015 |
Chen J, Lin M, Hrabovsky A, Pedrosa E, Dean J, Jain S, Zheng D, Lachman HM. ZNF804A Transcriptional Networks in Differentiating Neurons Derived from Induced Pluripotent Stem Cells of Human Origin. Plos One. 10: e0124597. PMID 25905630 DOI: 10.1371/Journal.Pone.0124597 |
0.43 |
|
2015 |
Adam RC, Yang H, Rockowitz S, Larsen SB, Nikolova M, Oristian DS, Polak L, Kadaja M, Asare A, Zheng D, Fuchs E. Pioneer factors govern super-enhancer dynamics in stem cell plasticity and lineage choice. Nature. 521: 366-70. PMID 25799994 DOI: 10.1038/Nature14289 |
0.351 |
|
2015 |
Xu B, On DM, Ma A, Parton T, Konze KD, Pattenden SG, Allison DF, Cai L, Rockowitz S, Liu S, Liu Y, Li F, Vedadi M, Frye SV, Garcia BA, ... Zheng D, et al. Selective inhibition of EZH2 and EZH1 enzymatic activity by a small molecule suppresses MLL-rearranged leukemia. Blood. 125: 346-57. PMID 25395428 DOI: 10.1182/Blood-2014-06-581082 |
0.353 |
|
2015 |
Lu R, Wang P, Parton T, Zheng D, Wang GG. Epigenetic Reprogramming of Cis-Regulatory Sites By R882-Mutated DNMT3A Potentiates Aberrant Stem Cell Gene Program and Acute Leukemia Development Blood. 126: 2430-2430. DOI: 10.1182/Blood.V126.23.2430.2430 |
0.371 |
|
2014 |
Lee W, Teckie S, Wiesner T, Ran L, Prieto Granada CN, Lin M, Zhu S, Cao Z, Liang Y, Sboner A, Tap WD, Fletcher JA, Huberman KH, Qin LX, Viale A, ... ... Zheng D, et al. PRC2 is recurrently inactivated through EED or SUZ12 loss in malignant peripheral nerve sheath tumors. Nature Genetics. 46: 1227-32. PMID 25240281 DOI: 10.1038/Ng.3095 |
0.313 |
|
2014 |
Chamberlain AA, Lin M, Lister RL, Maslov AA, Wang Y, Suzuki M, Wu B, Greally JM, Zheng D, Zhou B. DNA methylation is developmentally regulated for genes essential for cardiogenesis. Journal of the American Heart Association. 3: e000976. PMID 24947998 DOI: 10.1161/Jaha.114.000976 |
0.345 |
|
2014 |
Rockowitz S, Lien WH, Pedrosa E, Wei G, Lin M, Zhao K, Lachman HM, Fuchs E, Zheng D. Comparison of REST cistromes across human cell types reveals common and context-specific functions. Plos Computational Biology. 10: e1003671. PMID 24922058 DOI: 10.1371/Journal.Pcbi.1003671 |
0.405 |
|
2014 |
Castellanos R, Xie Q, Zheng D, Cvekl A, Morrow BE. Mammalian TBX1 preferentially binds and regulates downstream targets via a tandem T-site repeat. Plos One. 9: e95151. PMID 24797903 DOI: 10.1371/Journal.Pone.0095151 |
0.366 |
|
2014 |
Lin M, Zhao D, Hrabovsky A, Pedrosa E, Zheng D, Lachman HM. Heat shock alters the expression of schizophrenia and autism candidate genes in an induced pluripotent stem cell model of the human telencephalon. Plos One. 9: e94968. PMID 24736721 DOI: 10.1371/Journal.Pone.0094968 |
0.372 |
|
2014 |
Kong P, Racedo SE, Macchiarulo S, Hu Z, Carpenter C, Guo T, Wang T, Zheng D, Morrow BE. Tbx1 is required autonomously for cell survival and fate in the pharyngeal core mesoderm to form the muscles of mastication. Human Molecular Genetics. 23: 4215-31. PMID 24705356 DOI: 10.1093/Hmg/Ddu140 |
0.348 |
|
2014 |
Guo X, Lin M, Rockowitz S, Lachman HM, Zheng D. Characterization of human pseudogene-derived non-coding RNAs for functional potential. Plos One. 9: e93972. PMID 24699680 DOI: 10.1371/Journal.Pone.0093972 |
0.408 |
|
2014 |
Bell RD, Long X, Lin M, Bergmann JH, Nanda V, Cowan SL, Zhou Q, Han Y, Spector DL, Zheng D, Miano JM. Identification and initial functional characterization of a human vascular cell-enriched long noncoding RNA. Arteriosclerosis, Thrombosis, and Vascular Biology. 34: 1249-59. PMID 24578380 DOI: 10.1161/Atvbaha.114.303240 |
0.351 |
|
2014 |
Kadaja M, Keyes BE, Lin M, Pasolli HA, Genander M, Polak L, Stokes N, Zheng D, Fuchs E. SOX9: a stem cell transcriptional regulator of secreted niche signaling factors. Genes & Development. 28: 328-41. PMID 24532713 DOI: 10.1101/Gad.233247.113 |
0.377 |
|
2014 |
Lien WH, Polak L, Lin M, Lay K, Zheng D, Fuchs E. In vivo transcriptional governance of hair follicle stem cells by canonical Wnt regulators. Nature Cell Biology. 16: 179-90. PMID 24463605 DOI: 10.1038/Ncb2903 |
0.377 |
|
2013 |
Keyes BE, Segal JP, Heller E, Lien WH, Chang CY, Guo X, Oristian DS, Zheng D, Fuchs E. Nfatc1 orchestrates aging in hair follicle stem cells. Proceedings of the National Academy of Sciences of the United States of America. 110: E4950-9. PMID 24282298 DOI: 10.1073/Pnas.1320301110 |
0.315 |
|
2013 |
Chen J, Lin M, Foxe JJ, Pedrosa E, Hrabovsky A, Carroll R, Zheng D, Lachman HM. Transcriptome comparison of human neurons generated using induced pluripotent stem cells derived from dental pulp and skin fibroblasts. Plos One. 8: e75682. PMID 24098394 DOI: 10.1371/Journal.Pone.0075682 |
0.376 |
|
2013 |
Banaszynski LA, Wen D, Dewell S, Whitcomb SJ, Lin M, Diaz N, Elsässer SJ, Chapgier A, Goldberg AD, Canaani E, Rafii S, Zheng D, Allis CD. Hira-dependent histone H3.3 deposition facilitates PRC2 recruitment at developmental loci in ES cells. Cell. 155: 107-20. PMID 24074864 DOI: 10.1016/J.Cell.2013.08.061 |
0.35 |
|
2013 |
Folgueras AR, Guo X, Pasolli HA, Stokes N, Polak L, Zheng D, Fuchs E. Architectural niche organization by LHX2 is linked to hair follicle stem cell function. Cell Stem Cell. 13: 314-27. PMID 24012369 DOI: 10.1016/J.Stem.2013.06.018 |
0.35 |
|
2013 |
Baker LA, Ueberheide BM, Dewell S, Chait BT, Zheng D, Allis CD. The yeast Snt2 protein coordinates the transcriptional response to hydrogen peroxide-mediated oxidative stress. Molecular and Cellular Biology. 33: 3735-48. PMID 23878396 DOI: 10.1128/Mcb.00025-13 |
0.35 |
|
2013 |
Xie Q, Yang Y, Huang J, Ninkovic J, Walcher T, Wolf L, Vitenzon A, Zheng D, Götz M, Beebe DC, Zavadil J, Cvekl A. Pax6 interactions with chromatin and identification of its novel direct target genes in lens and forebrain. Plos One. 8: e54507. PMID 23342162 DOI: 10.1371/Journal.Pone.0054507 |
0.438 |
|
2013 |
Cai L, Rothbart SB, Lu R, Xu B, Chen WY, Tripathy A, Rockowitz S, Zheng D, Patel DJ, Allis CD, Strahl BD, Song J, Wang GG. An H3K36 methylation-engaging Tudor motif of polycomb-like proteins mediates PRC2 complex targeting. Molecular Cell. 49: 571-82. PMID 23273982 DOI: 10.1016/J.Molcel.2012.11.026 |
0.384 |
|
2012 |
Lin M, Hrabovsky A, Pedrosa E, Wang T, Zheng D, Lachman HM. Allele-biased expression in differentiating human neurons: implications for neuropsychiatric disorders. Plos One. 7: e44017. PMID 22952857 DOI: 10.1371/Journal.Pone.0044017 |
0.379 |
|
2012 |
Wontakal SN, Guo X, Smith C, MacCarthy T, Bresnick EH, Bergman A, Snyder MP, Weissman SM, Zheng D, Skoultchi AI. A core erythroid transcriptional network is repressed by a master regulator of myelo-lymphoid differentiation. Proceedings of the National Academy of Sciences of the United States of America. 109: 3832-7. PMID 22357756 DOI: 10.1073/Pnas.1121019109 |
0.381 |
|
2011 |
Lin M, Pedrosa E, Shah A, Hrabovsky A, Maqbool S, Zheng D, Lachman HM. RNA-Seq of human neurons derived from iPS cells reveals candidate long non-coding RNAs involved in neurogenesis and neuropsychiatric disorders. Plos One. 6: e23356. PMID 21915259 DOI: 10.1371/Journal.Pone.0023356 |
0.393 |
|
2011 |
Lien WH, Guo X, Polak L, Lawton LN, Young RA, Zheng D, Fuchs E. Genome-wide maps of histone modifications unwind in vivo chromatin states of the hair follicle lineage. Cell Stem Cell. 9: 219-32. PMID 21885018 DOI: 10.1016/J.Stem.2011.07.015 |
0.367 |
|
2011 |
Pedrosa E, Sandler V, Shah A, Carroll R, Chang C, Rockowitz S, Guo X, Zheng D, Lachman HM. Development of patient-specific neurons in schizophrenia using induced pluripotent stem cells. Journal of Neurogenetics. 25: 88-103. PMID 21797804 DOI: 10.3109/01677063.2011.597908 |
0.326 |
|
2011 |
Wontakal SN, Guo X, Will B, Shi M, Raha D, Mahajan MC, Weissman S, Snyder M, Steidl U, Zheng D, Skoultchi AI. A large gene network in immature erythroid cells is controlled by the myeloid and B cell transcriptional regulator PU.1. Plos Genetics. 7: e1001392. PMID 21695229 DOI: 10.1371/Journal.Pgen.1001392 |
0.409 |
|
2010 |
Chi P, Chen Y, Zhang L, Guo X, Wongvipat J, Shamu T, Fletcher JA, Dewell S, Maki RG, Zheng D, Antonescu CR, Allis CD, Sawyers CL. ETV1 is a lineage survival factor that cooperates with KIT in gastrointestinal stromal tumours. Nature. 467: 849-53. PMID 20927104 DOI: 10.1038/Nature09409 |
0.382 |
|
2010 |
Abrajano JJ, Qureshi IA, Gokhan S, Molero AE, Zheng D, Bergman A, Mehler MF. Corepressor for element-1-silencing transcription factor preferentially mediates gene networks underlying neural stem cell fate decisions. Proceedings of the National Academy of Sciences of the United States of America. 107: 16685-90. PMID 20823235 DOI: 10.1073/Pnas.0906917107 |
0.411 |
|
2010 |
Pedrosa E, Shah A, Tenore C, Capogna M, Villa C, Guo X, Zheng D, Lachman HM. β-catenin promoter ChIP-chip reveals potential schizophrenia and bipolar disorder gene network. Journal of Neurogenetics. 24: 182-93. PMID 20615089 DOI: 10.3109/01677063.2010.495182 |
0.336 |
|
2010 |
Goldberg AD, Banaszynski LA, Noh KM, Lewis PW, Elsaesser SJ, Stadler S, Dewell S, Law M, Guo X, Li X, Wen D, Chapgier A, DeKelver RC, Miller JC, Lee YL, ... ... Zheng D, et al. Distinct factors control histone variant H3.3 localization at specific genomic regions. Cell. 140: 678-91. PMID 20211137 DOI: 10.1016/J.Cell.2010.01.003 |
0.344 |
|
2009 |
McLellan AS, Dubin RA, Jing Q, Maqbool SB, Olea R, Westby G, Broin PÓ, Fazzari MJ, Zheng D, Suzuki M, Greally JM. The Einstein Center for Epigenomics: studying the role of epigenomic dysregulation in human disease. Epigenomics. 1: 33-8. PMID 22122636 DOI: 10.2217/Epi.09.9 |
0.307 |
|
2009 |
Abrajano JJ, Qureshi IA, Gokhan S, Zheng D, Bergman A, Mehler MF. REST and CoREST modulate neuronal subtype specification, maturation and maintenance. Plos One. 4: e7936. PMID 19997604 DOI: 10.1371/Journal.Pone.0007936 |
0.374 |
|
2009 |
Abrajano JJ, Qureshi IA, Gokhan S, Zheng D, Bergman A, Mehler MF. Differential deployment of REST and CoREST promotes glial subtype specification and oligodendrocyte lineage maturation. Plos One. 4: e7665. PMID 19888342 DOI: 10.1371/Journal.Pone.0007665 |
0.394 |
|
2009 |
Liu YJ, Zheng D, Balasubramanian S, Carriero N, Khurana E, Robilotto R, Gerstein MB. Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity. Bmc Genomics. 10: 480. PMID 19835609 DOI: 10.1186/1471-2164-10-480 |
0.34 |
|
2009 |
Guo X, Zhang Z, Gerstein MB, Zheng D. Small RNAs originated from pseudogenes: cis- or trans-acting? Plos Computational Biology. 5: e1000449. PMID 19649160 DOI: 10.1371/Journal.Pcbi.1000449 |
0.324 |
|
2009 |
Zheng D, Zhao K, Mehler MF. Profiling RE1/REST-mediated histone modifications in the human genome. Genome Biology. 10: R9. PMID 19173732 DOI: 10.1186/Gb-2009-10-1-R9 |
0.358 |
|
2009 |
Balasubramanian S, Zheng D, Liu YJ, Fang G, Frankish A, Carriero N, Robilotto R, Cayting P, Gerstein M. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Genome Biology. 10: R2. PMID 19123937 DOI: 10.1186/Gb-2009-10-1-R2 |
0.313 |
|
2009 |
Cvekl A, Zheng D. Gene sharing and evolution Human Genomics. 4: 66. DOI: 10.1186/1479-7364-4-1-66 |
0.318 |
|
2008 |
Zheng D. Gene duplication in the epigenomic era. Epigenetics. 3: 250-3. PMID 19013828 DOI: 10.4161/Epi.3.5.6991 |
0.38 |
|
2008 |
Zheng D. Asymmetric histone modifications between the original and derived loci of human segmental duplications. Genome Biology. 9: R105. PMID 18598352 DOI: 10.1186/Gb-2008-9-7-R105 |
0.312 |
|
2007 |
Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, ... ... Zheng D, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 447: 799-816. PMID 17571346 DOI: 10.1038/Nature05874 |
0.376 |
|
2007 |
Zheng D, Frankish A, Baertsch R, Kapranov P, Reymond A, Choo SW, Lu Y, Denoeud F, Antonarakis SE, Snyder M, Ruan Y, Wei CL, Gingeras TR, Guigó R, Harrow J, et al. Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution. Genome Research. 17: 839-51. PMID 17568002 DOI: 10.1101/Gr.5586307 |
0.376 |
|
2007 |
Rozowsky JS, Newburger D, Sayward F, Wu J, Jordan G, Korbel JO, Nagalakshmi U, Yang J, Zheng D, Guigó R, Gingeras TR, Weissman S, Miller P, Snyder M, Gerstein MB. The DART classification of unannotated transcription within the ENCODE regions: associating transcription with known and novel loci. Genome Research. 17: 732-45. PMID 17567993 DOI: 10.1101/Gr.5696007 |
0.373 |
|
2007 |
Trinklein ND, Karaöz U, Wu J, Halees A, Force Aldred S, Collins PJ, Zheng D, Zhang ZD, Gerstein MB, Snyder M, Myers RM, Weng Z. Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome. Genome Research. 17: 720-31. PMID 17567992 DOI: 10.1101/Gr.5716607 |
0.38 |
|
2007 |
Gerstein MB, Bruce C, Rozowsky JS, Zheng D, Du J, Korbel JO, Emanuelsson O, Zhang ZD, Weissman S, Snyder M. What is a gene, post-ENCODE? History and updated definition. Genome Research. 17: 669-81. PMID 17567988 DOI: 10.1101/Gr.6339607 |
0.392 |
|
2007 |
Zheng D, Gerstein MB. The ambiguous boundary between genes and pseudogenes: the dead rise up, or do they? Trends in Genetics : Tig. 23: 219-24. PMID 17382428 DOI: 10.1016/J.Tig.2007.03.003 |
0.317 |
|
2007 |
Emanuelsson O, Nagalakshmi U, Zheng D, Rozowsky JS, Urban AE, Du J, Lian Z, Stolc V, Weissman S, Snyder M, Gerstein MB. Assessing the performance of different high-density tiling microarray strategies for mapping transcribed regions of the human genome. Genome Research. 17: 886-97. PMID 17119069 DOI: 10.1101/Gr.5014606 |
0.336 |
|
2006 |
Rozowsky J, Wu J, Lian Z, Nagalakshmi U, Korbel JO, Kapranov P, Zheng D, Dyke S, Newburger P, Miller P, Gingeras TR, Weissman S, Gerstein M, Snyder M. Novel transcribed regions in the human genome. Cold Spring Harbor Symposia On Quantitative Biology. 71: 111-6. PMID 17381286 DOI: 10.1101/Sqb.2006.71.054 |
0.345 |
|
2006 |
Zheng D, Gerstein MB. A computational approach for identifying pseudogenes in the ENCODE regions. Genome Biology. 7: S13.1-10. PMID 16925835 DOI: 10.1186/Gb-2006-7-S1-S13 |
0.347 |
|
2006 |
Gerstein M, Zheng D. The real life of pseudogenes. Scientific American. 295: 48-55. PMID 16866288 DOI: 10.1038/Scientificamerican0806-48 |
0.316 |
|
2006 |
Zhang Z, Carriero N, Zheng D, Karro J, Harrison PM, Gerstein M. PseudoPipe: an automated pseudogene identification pipeline. Bioinformatics (Oxford, England). 22: 1437-9. PMID 16574694 DOI: 10.1093/Bioinformatics/Btl116 |
0.331 |
|
2005 |
Zheng D, Zhang Z, Harrison PM, Karro J, Carriero N, Gerstein M. Integrated pseudogene annotation for human chromosome 22: evidence for transcription. Journal of Molecular Biology. 349: 27-45. PMID 15876366 DOI: 10.1016/J.Jmb.2005.02.072 |
0.409 |
|
2005 |
Harrison PM, Zheng D, Zhang Z, Carriero N, Gerstein M. Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability. Nucleic Acids Research. 33: 2374-83. PMID 15860774 DOI: 10.1093/Nar/Gki531 |
0.402 |
|
2005 |
Zheng D, Swapna GVT, Hunter M, Montelione G. Resonance Assignments for the Z Domain of Staphylococcal Protein A using a 2H, 13C, 15N enriched, selective methyl protonated sample Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr5656 |
0.437 |
|
2004 |
Zheng D, Aramini JM, Montelione GT. Validation of helical tilt angles in the solution NMR structure of the Z domain of Staphylococcal protein A by combined analysis of residual dipolar coupling and NOE data. Protein Science : a Publication of the Protein Society. 13: 549-54. PMID 14718654 DOI: 10.1110/Ps.03351704 |
0.453 |
|
2003 |
Li W, Zhang Y, Kihara D, Huang YJ, Zheng D, Montelione GT, Kolinski A, Skolnick J. TOUCHSTONEX: Protein structure prediction with sparse NMR data Proteins: Structure, Function and Genetics. 53: 290-306. PMID 14517980 DOI: 10.1002/Prot.10499 |
0.649 |
|
2003 |
Zheng D, Cort JR, Chiang Y, Acton T, Kennedy MA, Montelione GT. 1H, 13C and 15N resonance assignments for methionine sulfoxide reductase B from Bacillus subtilis. Journal of Biomolecular Nmr. 27: 183-4. PMID 12913416 DOI: 10.1023/A:1024991310929 |
0.424 |
|
2003 |
Goh CS, Lan N, Echols N, Douglas SM, Milburn D, Bertone P, Xiao R, Ma LC, Zheng D, Wunderlich Z, Acton T, Montelione GT, Gerstein M. SPINE 2: a system for collaborative structural proteomics within a federated database framework. Nucleic Acids Research. 31: 2833-8. PMID 12771210 DOI: 10.1093/Nar/Gkg397 |
0.45 |
|
2003 |
Zheng D, Huang YJ, Moseley HN, Xiao R, Aramini J, Swapna GV, Montelione GT. Automated protein fold determination using a minimal NMR constraint strategy. Protein Science : a Publication of the Protein Society. 12: 1232-46. PMID 12761394 DOI: 10.1110/Ps.0300203 |
0.656 |
|
2002 |
Cort JR, Chiang Y, Zheng D, Montelione GT, Kennedy MA. NMR structure of conserved eukaryotic protein ZK652.3 from C. elegans: a ubiquitin-like fold. Proteins. 48: 733-6. PMID 12211038 DOI: 10.1002/Prot.10197 |
0.514 |
|
2001 |
Bertone P, Kluger Y, Lan N, Zheng D, Christendat D, Yee A, Edwards AM, Arrowsmith CH, Montelione GT, Gerstein M. SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics. Nucleic Acids Research. 29: 2884-98. PMID 11433035 DOI: 10.1093/Nar/29.13.2884 |
0.479 |
|
2000 |
Montelione GT, Zheng D, Huang YJ, Gunsalus KC, Szyperski T. Protein NMR spectroscopy in structural genomics. Nature Structural Biology. 7: 982-5. PMID 11104006 DOI: 10.1038/80768 |
0.467 |
|
Low-probability matches (unlikely to be authored by this person) |
2016 |
Zhao J, Zhang W, Lin M, Wu W, Jiang P, Tou E, Xue M, Richards A, Jourd'heuil D, Asif A, Zheng D, Singer HA, Miano JM, Long X. MYOSLID Is a Novel Serum Response Factor-Dependent Long Noncoding RNA That Amplifies the Vascular Smooth Muscle Differentiation Program. Arteriosclerosis, Thrombosis, and Vascular Biology. PMID 27444199 DOI: 10.1161/Atvbaha.116.307879 |
0.298 |
|
2018 |
Cai L, Tsai YH, Wang P, Wang J, Li D, Fan H, Zhao Y, Bareja R, Lu R, Wilson EM, Sboner A, Whang YE, Zheng D, Parker JS, Earp HS, et al. ZFX Mediates Non-canonical Oncogenic Functions of the Androgen Receptor Splice Variant 7 in Castrate-Resistant Prostate Cancer. Molecular Cell. PMID 30270106 DOI: 10.1016/J.Molcel.2018.08.029 |
0.297 |
|
2013 |
Polkinghorn WR, Parker JS, Lee MX, Kass EM, Spratt DE, Iaquinta PJ, Arora VK, Yen WF, Cai L, Zheng D, Carver BS, Chen Y, Watson PA, Shah NP, Fujisawa S, et al. Androgen receptor signaling regulates DNA repair in prostate cancers. Cancer Discovery. 3: 1245-53. PMID 24027196 DOI: 10.1158/2159-8290.Cd-13-0172 |
0.295 |
|
2022 |
Chrysanthou S, Tang Q, Lee J, Taylor SJ, Zhao Y, Steidl U, Zheng D, Dawlaty MM. The DNA dioxygenase Tet1 regulates H3K27 modification and embryonic stem cell biology independent of its catalytic activity. Nucleic Acids Research. PMID 35150568 DOI: 10.1093/nar/gkac089 |
0.292 |
|
2015 |
Yang H, Schramek D, Adam RC, Keyes BE, Wang P, Zheng D, Fuchs E. Author response: ETS family transcriptional regulators drive chromatin dynamics and malignancy in squamous cell carcinomas Elife. DOI: 10.7554/Elife.10870.022 |
0.29 |
|
2007 |
Karro JE, Yan Y, Zheng D, Zhang Z, Carriero N, Cayting P, Harrrison P, Gerstein M. Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation. Nucleic Acids Research. 35: D55-60. PMID 17099229 DOI: 10.1093/Nar/Gkl851 |
0.289 |
|
2017 |
Shukla S, Cyrta J, Murphy DA, Walczak EG, Ran L, Agrawal P, Xie Y, Chen Y, Wang S, Zhan Y, Li D, Wong EWP, Sboner A, Beltran H, Mosquera JM, ... ... Zheng D, et al. Aberrant Activation of a Gastrointestinal Transcriptional Circuit in Prostate Cancer Mediates Castration Resistance. Cancer Cell. PMID 29153843 DOI: 10.1016/J.Ccell.2017.10.008 |
0.289 |
|
2013 |
Arora VK, Schenkein E, Murali R, Subudhi SK, Wongvipat J, Balbas MD, Shah N, Cai L, Efstathiou E, Logothetis C, Zheng D, Sawyers CL. Glucocorticoid receptor confers resistance to antiandrogens by bypassing androgen receptor blockade. Cell. 155: 1309-22. PMID 24315100 DOI: 10.1016/J.Cell.2013.11.012 |
0.288 |
|
2013 |
Chen Y, Chi P, Rockowitz S, Iaquinta PJ, Shamu T, Shukla S, Gao D, Sirota I, Carver BS, Wongvipat J, Scher HI, Zheng D, Sawyers CL. ETS factors reprogram the androgen receptor cistrome and prime prostate tumorigenesis in response to PTEN loss. Nature Medicine. 19: 1023-9. PMID 23817021 DOI: 10.1038/Nm.3216 |
0.287 |
|
2018 |
Zhao D, Zheng D. SMARTcleaner: identify and clean off-target signals in SMART ChIP-seq analysis. Bmc Bioinformatics. 19: 544. PMID 30587107 DOI: 10.1186/S12859-018-2577-4 |
0.287 |
|
2016 |
Guo X, Delio M, Haque N, Castellanos R, Hestand MS, Vermeesch JR, Morrow BE, Zheng D. Variant discovery and breakpoint region prediction for studying the human 22q11.2 deletion using BAC clone and whole genome sequencing analysis. Human Molecular Genetics. PMID 27436579 DOI: 10.1093/Hmg/Ddw221 |
0.286 |
|
2021 |
Li J, Galbo PM, Gong W, Storey AJ, Tsai YH, Yu X, Ahn JH, Guo Y, Mackintosh SG, Edmondson RD, Byrum SD, Farrar JE, He S, Cai L, Jin J, ... ... Zheng D, et al. ZMYND11-MBTD1 induces leukemogenesis through hijacking NuA4/TIP60 acetyltransferase complex and a PWWP-mediated chromatin association mechanism. Nature Communications. 12: 1045. PMID 33594072 DOI: 10.1038/s41467-021-21357-3 |
0.281 |
|
2019 |
Nguyen MB, Valdes VJ, Cohen I, Pothula V, Zhao D, Zheng D, Ezhkova E. Dissection of Merkel cell formation in hairy and glabrous skin reveals a common requirement for FGFR2-mediated signaling. Experimental Dermatology. PMID 30758073 DOI: 10.1111/Exd.13901 |
0.281 |
|
2015 |
Zhao D, Lin M, Chen J, Pedrosa E, Hrabovsky A, Fourcade HM, Zheng D, Lachman HM. MicroRNA Profiling of Neurons Generated Using Induced Pluripotent Stem Cells Derived from Patients with Schizophrenia and Schizoaffective Disorder, and 22q11.2 Del. Plos One. 10: e0132387. PMID 26173148 DOI: 10.1371/Journal.Pone.0132387 |
0.281 |
|
2017 |
Shah N, Wang P, Wongvipat J, Karthaus WR, Abida W, Armenia J, Rockowitz S, Drier Y, Bernstein BE, Long HW, Freedman ML, Arora VK, Zheng D, Sawyers CL. Regulation of the glucocorticoid receptor via a BET-dependent enhancer drives antiandrogen resistance in prostate cancer. Elife. 6. PMID 28891793 DOI: 10.7554/Elife.27861 |
0.277 |
|
2018 |
Zhang Y, Zvi YS, Batko B, Zaphiros N, O'Donnell EF, Wang J, Sato K, Yang R, Geller DS, Koirala P, Zhang W, Du X, Piperdi S, Liu Y, Zheng D, et al. Down-regulation of Skp2 expression inhibits invasion and lung metastasis in osteosarcoma. Scientific Reports. 8: 14294. PMID 30250282 DOI: 10.1038/S41598-018-32428-9 |
0.273 |
|
2021 |
Nomaru H, Liu Y, De Bono C, Righelli D, Cirino A, Wang W, Song H, Racedo SE, Dantas AG, Zhang L, Cai CL, Angelini C, Christiaen L, Kelly RG, Baldini A, ... Zheng D, et al. Single cell multi-omic analysis identifies a Tbx1-dependent multilineage primed population in murine cardiopharyngeal mesoderm. Nature Communications. 12: 6645. PMID 34789765 DOI: 10.1038/s41467-021-26966-6 |
0.273 |
|
2015 |
Sun J, Rockowitz S, Chauss D, Wang P, Kantorow M, Zheng D, Cvekl A. Chromatin features, RNA polymerase II and the comparative expression of lens genes encoding crystallins, transcription factors, and autophagy mediators. Molecular Vision. 21: 955-73. PMID 26330747 |
0.272 |
|
2020 |
Chitu V, Biundo F, Shlager GGL, Park ES, Wang P, Gulinello ME, Gokhan Ş, Ketchum HC, Saha K, DeTure MA, Dickson DW, Wszolek ZK, Zheng D, Croxford AL, Becher B, et al. Microglial Homeostasis Requires Balanced CSF-1/CSF-2 Receptor Signaling. Cell Reports. 30: 3004-3019.e5. PMID 32130903 DOI: 10.1016/J.Celrep.2020.02.028 |
0.271 |
|
2013 |
Ko YA, Mohtat D, Suzuki M, Park AS, Izquierdo MC, Han SY, Kang HM, Si H, Hostetter T, Pullman JM, Fazzari M, Verma A, Zheng D, Greally JM, Susztak K. Cytosine methylation changes in enhancer regions of core pro-fibrotic genes characterize kidney fibrosis development. Genome Biology. 14: R108. PMID 24098934 DOI: 10.1186/Gb-2013-14-10-R108 |
0.27 |
|
2023 |
Chang W, Zhao Y, Rayêe D, Xie Q, Suzuki M, Zheng D, Cvekl A. Dynamic changes in whole genome DNA methylation, chromatin and gene expression during mouse lens differentiation. Epigenetics & Chromatin. 16: 4. PMID 36698218 DOI: 10.1186/s13072-023-00478-7 |
0.268 |
|
2021 |
Ahn JH, Davis ES, Daugird TA, Zhao S, Quiroga IY, Uryu H, Li J, Storey AJ, Tsai YH, Keeley DP, Mackintosh SG, Edmondson RD, Byrum SD, Cai L, Tackett AJ, ... Zheng D, et al. Phase separation drives aberrant chromatin looping and cancer development. Nature. PMID 34163069 DOI: 10.1038/s41586-021-03662-5 |
0.267 |
|
2021 |
Flora P, Li MY, Galbo PM, Astorkia M, Zheng D, Ezhkova E. Polycomb repressive complex 2 in adult hair follicle stem cells is dispensable for hair regeneration. Plos Genetics. 17: e1009948. PMID 34905545 DOI: 10.1371/journal.pgen.1009948 |
0.266 |
|
2023 |
Astorkia M, Liu Y, Pedrosa EM, Lachman HM, Zheng D. Molecular and network disruptions in neurodevelopment uncovered by single cell transcriptomics analysis of heterozygous cerebral organoids. Biorxiv : the Preprint Server For Biology. PMID 37808768 DOI: 10.1101/2023.09.27.559752 |
0.26 |
|
2011 |
Guo X, Freyer L, Morrow B, Zheng D. Characterization of the past and current duplication activities in the human 22q11.2 region. Bmc Genomics. 12: 71. PMID 21269513 DOI: 10.1186/1471-2164-12-71 |
0.258 |
|
2021 |
Yuan Y, Bao J, Chen Z, Villanueva AD, Wen W, Wang F, Zhao D, Fu X, Cai Q, Long J, Shu XO, Zheng D, Moreno V, Zheng W, Lin W, et al. Multi-omics analysis to identify susceptibility genes for colorectal cancer. Human Molecular Genetics. PMID 33481017 DOI: 10.1093/hmg/ddab021 |
0.256 |
|
2005 |
Coric T, Zheng D, Gerstein M, Canessa CM. Proton sensitivity of ASIC1 appeared with the rise of fishes by changes of residues in the region that follows TM1 in the ectodomain of the channel. The Journal of Physiology. 568: 725-35. PMID 16002453 DOI: 10.1113/Jphysiol.2005.087734 |
0.255 |
|
2001 |
Livant EJ, Zheng D, Johnson LW, Shi W, Ewald SJ. Three new MHC haplotypes in broiler breeder chickens. Animal Genetics. 32: 123-31. PMID 11493260 DOI: 10.1046/J.1365-2052.2001.00741.X |
0.251 |
|
2015 |
Caescu CI, Guo X, Tesfa L, Bhagat TD, Verma A, Zheng D, Stanley ER. Colony stimulating factor-1 receptor signaling networks inhibit mouse macrophage inflammatory responses by induction of microRNA-21. Blood. 125: e1-13. PMID 25573988 DOI: 10.1182/Blood-2014-10-608000 |
0.249 |
|
2017 |
Tibrewal M, Cheng B, Dohare P, Hu F, Mehdizadeh R, Wang P, Zheng D, Ungvari Z, Ballabh P. Disruption of Interneuron Neurogenesis in Premature Newborns and Reversal with Estrogen Treatment. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 29246927 DOI: 10.1523/Jneurosci.1875-17.2017 |
0.248 |
|
2019 |
Nguyen MB, Cohen I, Valdes J, Xu Z, Bar C, Dauber K, Tsai P, Zhao D, Zheng D, Hsu Y, Chen T, Ezhkova E. 869 The specification of Merkel cell in the back skin and glabrous paw skin is controlled by FGFR2-meditated signaling Journal of Investigative Dermatology. 139. DOI: 10.1016/J.Jid.2019.03.945 |
0.244 |
|
2018 |
Zhang D, Wang Y, Lu P, Wang P, Yuan X, Yan J, Cai C, Chang CP, Zheng D, Wu B, Zhou B. Author Correction: REST regulates the cell cycle for cardiac development and regeneration. Nature Communications. 9: 167. PMID 29330540 DOI: 10.1038/S41467-017-02617-7 |
0.243 |
|
2023 |
Stathopoulou A, Wang P, Thellier C, Kelly RG, Zheng D, Scambler PJ. CHARGE syndrome-associated CHD7 acts at ISL1-regulated enhancers to modulate second heart field gene expression. Cardiovascular Research. PMID 37052590 DOI: 10.1093/cvr/cvad059 |
0.243 |
|
2021 |
Zhao L, Zhang P, Galbo PM, Zhou X, Aryal S, Qiu S, Zhang H, Zhou Y, Li C, Zheng D, Bhatia R, Lu R. Transcription Factor MEF2D is Required for the Maintenance of MLL-rearranged Acute Myeloid Leukemia. Blood Advances. PMID 34597364 DOI: 10.1182/bloodadvances.2021004469 |
0.242 |
|
2017 |
Shah N, Wang P, Wongvipat J, Karthaus WR, Abida W, Armenia J, Rockowitz S, Drier Y, Bernstein BE, Long HW, Freedman ML, Arora VK, Zheng D, Sawyers CL. Author response: Regulation of the glucocorticoid receptor via a BET-dependent enhancer drives antiandrogen resistance in prostate cancer Elife. DOI: 10.7554/Elife.27861.019 |
0.242 |
|
2016 |
Wang P, Zhao D, Rockowitz S, Zheng D. Divergence and rewiring of regulatory networks for neural development between human and other species. Neurogenesis (Austin, Tex.). 3: e1231495. PMID 27900343 DOI: 10.1080/23262133.2016.1231495 |
0.241 |
|
2018 |
Wu W, Xu S, Wang J, Zhang K, Zhang M, Cao Y, Ren H, Zheng D, Zhong C. Metabolite differences between glutamate carboxypeptidase II gene knockout mice and their wild-type littermates after traumatic brain injury: a 7-tesla H-MRS study. Bmc Neuroscience. 19: 75. PMID 30458729 DOI: 10.1186/S12868-018-0473-5 |
0.237 |
|
2019 |
Cohen I, Zhao D, Menon G, Nakayama M, Koseki H, Zheng D, Ezhkova E. 287 Polycomb repressive complex 1 (PRC1) preserves epidermal tissue integrity independently of PRC2 Journal of Investigative Dermatology. 139. DOI: 10.1016/J.Jid.2019.03.363 |
0.235 |
|
2018 |
Guo T, Diacou A, Hiroko N, McDonald-McGinn DM, Hestand M, Demaerel W, Zhang L, Zhao Y, Ujueta F, Shan J, Montagna C, Zheng D, Crowley TB, Kushan-Wells L, Bearden CE, et al. Deletion size analysis of 1,680 22q11.2DS subjects identifies a new recombination hotspot on chromosome 22q11.2. Human Molecular Genetics. PMID 29361080 DOI: 10.1093/Hmg/Ddy028 |
0.234 |
|
2016 |
Mi S, Lin M, Brouwer-Visser J, Heim J, Smotkin D, Hebert TM, Gunter MJ, Goldberg GL, Zheng D, Huang GS. RNA-seq identification of RACGAP1 as a metastatic driver in uterine carcinosarcoma. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 27121792 DOI: 10.1158/1078-0432.Ccr-15-2116 |
0.229 |
|
2021 |
Li MY, Flora P, Pu H, Bar C, Silva J, Cohen I, Galbo PM, Liu H, Yu X, Jin J, Koseki H, D'Orazio JA, Zheng D, Ezhkova E. UV-induced reduction in Polycomb repression promotes epidermal pigmentation. Developmental Cell. PMID 34473941 DOI: 10.1016/j.devcel.2021.08.006 |
0.228 |
|
2023 |
Ferrena A, Wang J, Zhang R, Karadal-Ferrena B, Al-Hardan W, Singh S, Borjihan H, Schwartz EL, Zhao H, Oktay MH, Yang R, Geller DS, Hoang BH, Zheng D. SKP2 knockout in Rb1/p53 deficient mouse models of osteosarcoma induces immune infiltration and drives a transcriptional program with a favorable prognosis. Molecular Cancer Therapeutics. PMID 37871911 DOI: 10.1158/1535-7163.MCT-23-0173 |
0.228 |
|
2018 |
Lee E, Wongvipat J, Choi D, Wang P, Lee YS, Zheng D, Watson PA, Gopalan A, Sawyers CL. Author response: GREB1 amplifies androgen receptor output in human prostate cancer and contributes to antiandrogen resistance Elife. DOI: 10.7554/Elife.41913.036 |
0.225 |
|
2021 |
Liu Y, Wang T, Zhou B, Zheng D. Robust integration of multiple single-cell RNA sequencing datasets using a single reference space. Nature Biotechnology. PMID 33767393 DOI: 10.1038/s41587-021-00859-x |
0.225 |
|
1999 |
Zheng D, O'Keefe G, Li L, Johnson LW, Ewald SJ. A PCR method for typing B-L beta II family (class II MHC) alleles in broiler chickens. Animal Genetics. 30: 109-19. PMID 10376301 DOI: 10.1046/J.1365-2052.1999.00460.X |
0.222 |
|
2012 |
Wu B, Zhang Z, Lui W, Chen X, Wang Y, Chamberlain AA, Moreno-Rodriguez RA, Markwald RR, O'Rourke BP, Sharp DJ, Zheng D, Lenz J, Baldwin HS, Chang CP, Zhou B. Endocardial cells form the coronary arteries by angiogenesis through myocardial-endocardial VEGF signaling. Cell. 151: 1083-96. PMID 23178125 DOI: 10.1016/J.Cell.2012.10.023 |
0.219 |
|
2023 |
Zhao Y, Wang Y, Shi L, McDonald-McGinn DM, Crowley TB, McGinn DE, Tran OT, Miller D, Lin JR, Zackai E, Johnston HR, Chow EWC, Vorstman JAS, Vingerhoets C, van Amelsvoort T, ... ... Zheng D, et al. Chromatin regulators in the TBX1 network confer risk for conotruncal heart defects in 22q11.2DS. Npj Genomic Medicine. 8: 17. PMID 37463940 DOI: 10.1038/s41525-023-00363-y |
0.218 |
|
2024 |
Nguyen MB, Flora P, Branch MC, Weber M, Zheng XY, Sivan U, Joost S, Annusver K, Zheng D, Kasper M, Ezhkova E. Tenascin-C expressing touch dome keratinocytes exhibit characteristics of all epidermal lineages. Science Advances. 10: eadi5791. PMID 38241368 DOI: 10.1126/sciadv.adi5791 |
0.218 |
|
2020 |
Liu Y, Singh VK, Zheng D. Stereo3D: using stereo images to enrich 3D visualization. Bioinformatics (Oxford, England). PMID 32415957 DOI: 10.1093/Bioinformatics/Btaa521 |
0.216 |
|
2013 |
Mi S, Lin M, Heim J, Isani S, Brouwer-Visser J, Cossio-Poblete M, Smotkin D, Gunter MJ, Zheng D, Huang GS. RACGAP1 overexpression in uterine carcinosarcomas. Journal of Clinical Oncology. 31. DOI: 10.1200/Jco.2013.31.15_Suppl.E22009 |
0.216 |
|
2022 |
Ma L, Tang Q, Gao X, Lee J, Lei R, Suzuki M, Zheng D, Ito K, Frenette PS, Dawlaty MM. Tet-mediated DNA demethylation regulates specification of hematopoietic stem and progenitor cells during mammalian embryogenesis. Science Advances. 8: eabm3470. PMID 35235365 DOI: 10.1126/sciadv.abm3470 |
0.215 |
|
2023 |
De Bono C, Liu Y, Ferrena A, Valentine A, Zheng D, Morrow BE. Single-cell transcriptomics uncovers a non-autonomous Tbx1-dependent genetic program controlling cardiac neural crest cell development. Nature Communications. 14: 1551. PMID 36941249 DOI: 10.1038/s41467-023-37015-9 |
0.212 |
|
2022 |
Trifiletti R, Lachman HM, Manusama O, Zheng D, Spalice A, Chiurazzi P, Schornagel A, Serban AM, van Wijck R, Cunningham JL, Swagemakers S, van der Spek PJ. Identification of ultra-rare genetic variants in pediatric acute onset neuropsychiatric syndrome (PANS) by exome and whole genome sequencing. Scientific Reports. 12: 11106. PMID 35773312 DOI: 10.1038/s41598-022-15279-3 |
0.204 |
|
2024 |
Wang H, Sica RA, Kaur G, Galbo PM, Jing Z, Nishimura CD, Ren X, Tanwar A, Etemad-Gilbertson B, Will B, Zheng D, Fooksman D, Zang X. TMIGD2 is an orchestrator and therapeutic target on human acute myeloid leukemia stem cells. Nature Communications. 15: 11. PMID 38167704 DOI: 10.1038/s41467-023-43843-6 |
0.196 |
|
2022 |
Piszczatowski RT, Schwenger E, Sundaravel S, Stein CM, Liu Y, Stanley P, Verma A, Zheng D, Seidel RD, Almo SC, Townley RA, Bülow HE, Steidl U. A glycan-based approach to cell characterization and isolation: Hematopoiesis as a paradigm. The Journal of Experimental Medicine. 219. PMID 36066492 DOI: 10.1084/jem.20212552 |
0.194 |
|
2023 |
Ferrena A, Zhang X, Shrestha R, Zheng D, Liu W. Six3 and Six6 jointly regulate the identities and developmental trajectories of multipotent retinal progenitor cells in the mouse retina. Biorxiv : the Preprint Server For Biology. PMID 37205402 DOI: 10.1101/2023.05.03.539288 |
0.19 |
|
2023 |
Bera BS, Thompson TV, Sosa E, Nomaru H, Reynolds D, Dubin RA, Maqbool SB, Zheng D, Morrow BE, Greally JM, Suzuki M. An optimized approach for multiplexing single-nuclear ATAC-seq using oligonucleotide-conjugated antibodies. Epigenetics & Chromatin. 16: 14. PMID 37118773 DOI: 10.1186/s13072-023-00486-7 |
0.186 |
|
2021 |
Xu C, Tsai YH, Galbo PM, Gong W, Storey AJ, Xu Y, Byrum SD, Xu L, Whang YE, Parker JS, Mackintosh SG, Edmondson RD, Tackett AJ, Huang J, Zheng D, et al. Cistrome analysis of YY1 uncovers a regulatory axis of YY1:BRD2/4-PFKP during tumorigenesis of advanced prostate cancer. Nucleic Acids Research. PMID 33849067 DOI: 10.1093/nar/gkab252 |
0.186 |
|
2024 |
Wang J, Ferrena A, Zhang R, Singh S, Viscarret V, Al-Harden W, Aldahamsheh O, Borjihan H, Singla A, Yaguare S, Tingling J, Zi X, Lo Y, Gorlick R, Schwartz EL, ... ... Zheng D, et al. Targeted inhibition of SCF confers anti-tumor activities resulting in a survival benefit in osteosarcoma. Oncogene. PMID 38355807 DOI: 10.1038/s41388-024-02942-4 |
0.183 |
|
2022 |
Singh VK, Misra R, Almo SC, Steidl UG, Bülow HE, Zheng D. HSMotifDiscover: identification of motifs in sequences composed of non-single-letter elements. Bioinformatics (Oxford, England). PMID 35771633 DOI: 10.1093/bioinformatics/btac437 |
0.173 |
|
2022 |
Wang F, Liu Y, Qiu W, Shum E, Feng M, Zhao D, Zheng D, Borczuk A, Cheng H, Halmos B. Functional analysis of MET exon 14 skipping alteration in cancer invasion and metastatic dissemination. Cancer Research. PMID 35078819 DOI: 10.1158/0008-5472.CAN-21-1327 |
0.167 |
|
2020 |
Ilaltdinov AW, Gong Y, Leong DJ, Gruson KI, Zheng D, Fung DT, Sun L, Sun HB. Advances in the development of gene therapy, noncoding RNA, and exosome-based treatments for tendinopathy. Annals of the New York Academy of Sciences. PMID 32501571 DOI: 10.1111/nyas.14382 |
0.159 |
|
2022 |
Ren X, Peng M, Xing P, Wei Y, Galbo PM, Corrigan D, Wang H, Su Y, Dong X, Sun Q, Li Y, Zhang X, Edelmann W, Zheng D, Zang X. Blockade of the immunosuppressive KIR2DL5/PVR pathway elicits potent human NK cell-mediated antitumor immunity. The Journal of Clinical Investigation. 132. PMID 36377656 DOI: 10.1172/JCI163620 |
0.157 |
|
2021 |
Wang L, Liu Y, Stratigopoulos G, Panigrahi SK, Sui L, LeDuc CA, Glover HJ, De Rosa MC, Burnett LC, Williams DJ, Shang L, Goland R, Tsang SH, Wardlaw SL, Egli D, ... Zheng D, et al. Bardet-Biedl Syndrome proteins regulate intracellular signaling and neuronal function in patient-specific iPSC-derived neurons. The Journal of Clinical Investigation. PMID 33630762 DOI: 10.1172/JCI146287 |
0.156 |
|
2023 |
Cui J, Zhang C, Lee JE, Bartholdy BA, Yang D, Liu Y, Erler P, Galbo PM, Hodge DQ, Huangfu D, Zheng D, Ge K, Guo W. MLL3 loss drives metastasis by promoting a hybrid epithelial-mesenchymal transition state. Nature Cell Biology. PMID 36604594 DOI: 10.1038/s41556-022-01045-0 |
0.155 |
|
2023 |
Lu P, Wu B, Wang Y, Russell M, Liu Y, Bernard DJ, Zheng D, Zhou B. Prerequisite endocardial-mesenchymal transition for murine cardiac trabecular angiogenesis. Developmental Cell. PMID 37023750 DOI: 10.1016/j.devcel.2023.03.009 |
0.153 |
|
2022 |
Patel AJ, Warda S, Maag JLV, Misra R, Miranda-Roman MA, Pachai MR, Lee CJ, Li D, Wang N, Bayshtok G, Fishinevich E, Meng Y, Wong EWP, Yan J, Giff E, ... ... Zheng D, et al. PRC2 Inactivating Mutations in Cancer Enhance Cytotoxic Response to DNMT1 Targeted Therapy via Enhanced Viral Mimicry. Cancer Discovery. PMID 35789380 DOI: 10.1158/2159-8290.CD-21-1671 |
0.152 |
|
2023 |
Liu Y, John P, Nishitani K, Cui J, Nishimura CD, Christin JR, Couturier N, Ren X, Wei Y, Pulanco MC, Galbo PM, Zhang X, Fu W, Cui W, Bartholdy BA, ... Zheng D, et al. A SOX9-B7x axis safeguards dedifferentiated tumor cells from immune surveillance to drive breast cancer progression. Developmental Cell. PMID 37963469 DOI: 10.1016/j.devcel.2023.10.010 |
0.152 |
|
2023 |
Racedo SE, Liu Y, Shi L, Zheng D, Morrow BE. Dgcr8 functions in the secondary heart field for outflow tract and right ventricle development in mammals. Developmental Biology. 506: 72-84. PMID 38110169 DOI: 10.1016/j.ydbio.2023.12.005 |
0.146 |
|
2022 |
John P, Pulanco MC, Galbo PM, Wei Y, Ohaegbulam KC, Zheng D, Zang X. The immune checkpoint B7x expands tumor-infiltrating Tregs and promotes resistance to anti-CTLA-4 therapy. Nature Communications. 13: 2506. PMID 35523809 DOI: 10.1038/s41467-022-30143-8 |
0.146 |
|
2021 |
Zhang Y, Zheng D. Pseudogene Profiling for Cancer Subtype Classification. Methods in Molecular Biology (Clifton, N.J.). 2324: 307-317. PMID 34165723 DOI: 10.1007/978-1-0716-1503-4_19 |
0.146 |
|
2021 |
Wang J, Aldahamsheh O, Ferrena A, Borjihan H, Singla A, Yaguare S, Singh S, Viscarret V, Tingling J, Zi X, Lo Y, Gorlick R, Zheng D, Schwartz EL, Zhao H, et al. The interaction of SKP2 with p27 enhances the progression and stemness of osteosarcoma. Annals of the New York Academy of Sciences. PMID 33594717 DOI: 10.1111/nyas.14578 |
0.144 |
|
2021 |
Wei Y, Ren X, Galbo PM, Moerdler S, Wang H, Sica RA, Etemad-Gilbertson B, Shi L, Zhu L, Tang X, Lin Q, Peng M, Guan F, Zheng D, Chinai JM, et al. KIR3DL3-HHLA2 is a human immunosuppressive pathway and a therapeutic target. Science Immunology. 6. PMID 34244312 DOI: 10.1126/sciimmunol.abf9792 |
0.143 |
|
2024 |
Zhang D, Wang Y, Lu P, Wang P, Yuan X, Yan J, Cai C, Chang CP, Zheng D, Wu B, Zhou B. Retraction Note: REST regulates the cell cycle for cardiac development and regeneration. Nature Communications. 15: 1623. PMID 38388651 DOI: 10.1038/s41467-024-46055-8 |
0.135 |
|
2023 |
Ferrena A, Wang J, Zhang R, Karadal-Ferrena B, Al-Hardan W, Singh S, Borjihan H, Schwartz E, Zhao H, Yang R, Geller D, Hoang B, Zheng D. SKP2 knockout in Rb1/p53 deficient mouse models of osteosarcoma induces immune infiltration and drives a transcriptional program with a favorable prognosis. Biorxiv : the Preprint Server For Biology. PMID 37214958 DOI: 10.1101/2023.05.09.540053 |
0.134 |
|
2023 |
Jing Z, Galbo P, Ovando L, Demouth M, Welte S, Park R, Chandran K, Wu Y, MacCarthy T, Zheng D, Fooksman D. Fine-tuning spatial-temporal dynamics and surface receptor expression support plasma cell-intrinsic longevity. Biorxiv : the Preprint Server For Biology. PMID 36891288 DOI: 10.1101/2023.02.15.527913 |
0.126 |
|
2023 |
Galbo PM, Madsen AT, Liu Y, Peng M, Wei Y, Ciesielski MJ, Fenstermaker RA, Graff S, Montagna C, Segall JE, Sidoli S, Zang X, Zheng D. Functional Contribution and Clinical Implication of Cancer-Associated Fibroblasts in Glioblastoma. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 38060213 DOI: 10.1158/1078-0432.CCR-23-0493 |
0.124 |
|
2022 |
Ren Z, Liang H, Galbo PM, Dharmaratne M, Kulkarni AS, Fard AT, Aoun ML, Martinez-Lopez N, Suyama K, Benard O, Zheng W, Liu Y, Albanese J, Zheng D, Mar JC, et al. Redox signaling by glutathione peroxidase 2 links vascular modulation to metabolic plasticity of breast cancer. Proceedings of the National Academy of Sciences of the United States of America. 119. PMID 35193955 DOI: 10.1073/pnas.2107266119 |
0.121 |
|
2024 |
Kadamb R, Anton ML, Purwin TJ, Chua V, Seeneevassen L, Teh J, Angela Nieto M, Sato T, Terai M, Roman SR, De Koning L, Zheng D, Aplin AE, Aguirre-Ghiso J. Lineage commitment pathways epigenetically oppose oncogenic Gαq/11-YAP signaling in dormant disseminated uveal melanoma. Biorxiv : the Preprint Server For Biology. PMID 38496663 DOI: 10.1101/2024.03.05.583565 |
0.12 |
|
2022 |
Yan J, Chen Y, Patel AJ, Warda S, Lee CJ, Nixon BG, Wong EW, Miranda-Román MA, Yang N, Wang Y, Pachai MR, Sher J, Giff E, Tang F, Khurana E, ... ... Zheng D, et al. Tumor-intrinsic PRC2 inactivation drives a context-dependent immune-desert microenvironment and is sensitized by immunogenic therapeutic viruses. The Journal of Clinical Investigation. PMID 35852856 DOI: 10.1172/JCI153437 |
0.113 |
|
2022 |
Astorkia M, Lachman HM, Zheng D. Characterization of cell-cell communication in autistic brains with single-cell transcriptomes. Journal of Neurodevelopmental Disorders. 14: 29. PMID 35501678 DOI: 10.1186/s11689-022-09441-1 |
0.109 |
|
2022 |
Picarda E, Galbo PM, Zong H, Rajan MR, Wallenius V, Zheng D, Börgeson E, Singh R, Pessin J, Zang X. The immune checkpoint B7-H3 (CD276) regulates adipocyte progenitor metabolism and obesity development. Science Advances. 8: eabm7012. PMID 35476450 DOI: 10.1126/sciadv.abm7012 |
0.109 |
|
2023 |
Li R, Chen B, Kubota A, Hanna A, Humeres C, Hernandez SC, Liu Y, Ma R, Tuleta I, Huang S, Venugopal H, Zhu F, Su K, Li J, Zhang J, ... Zheng D, et al. Protective effects of macrophage-specific integrin α5 in myocardial infarction are associated with accentuated angiogenesis. Nature Communications. 14: 7555. PMID 37985764 DOI: 10.1038/s41467-023-43369-x |
0.109 |
|
2019 |
Lister R, Chamberlain A, Einstein F, Wu B, Zheng D, Zhou B. Intrauterine Programming of Diabetes Induced Cardiac Embryopathy. Diabetes & Obesity International Journal. 4. PMID 32537569 |
0.102 |
|
2021 |
Galbo PM, Zang X, Zheng D. Implication of cancer associated fibroblast subtypes on cancer pathogenesis, prognosis, and immunotherapy resistance. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 33622705 DOI: 10.1158/1078-0432.CCR-20-4226 |
0.097 |
|
2020 |
Zhu Z, Li C, Zeng Y, Ding J, Qu Z, Gu J, Ge L, Tang F, Huang X, Zhou C, Wang P, Zheng D, Jin Y. PHB Associates with the HIRA Complex to Control an Epigenetic-Metabolic Circuit in Human ESCs. Cell Stem Cell. 26: 294. PMID 32032527 DOI: 10.1016/j.stem.2020.01.001 |
0.096 |
|
2021 |
Akhmetzyanova I, Aaron T, Galbo P, Tikhonova A, Dolgalev I, Tanaka M, Aifantis I, Zheng D, Zang X, Fooksman D. Tissue-resident macrophages promote early dissemination of multiple myeloma via IL-6 and TNFα. Blood Advances. 5: 3592-3608. PMID 34550328 DOI: 10.1182/bloodadvances.2021005327 |
0.094 |
|
2022 |
Lu P, Wang P, Wu B, Wang Y, Liu Y, Cheng W, Feng X, Yuan X, Atteya MM, Ferro H, Sugi Y, Rydquist G, Esmaily M, Butcher JT, Chang CP, ... ... Zheng D, et al. A SOX17-PDGFB signaling axis regulates aortic root development. Nature Communications. 13: 4065. PMID 35831318 DOI: 10.1038/s41467-022-31815-1 |
0.084 |
|
2021 |
Lu P, Wang Y, Liu Y, Wang Y, Wu B, Zheng D, Harvey RP, Zhou B. Perinatal angiogenesis from pre-existing coronary vessels via DLL4-NOTCH1 signalling. Nature Cell Biology. PMID 34497373 DOI: 10.1038/s41556-021-00747-1 |
0.079 |
|
2023 |
Alex L, Tuleta I, Hernandez SC, Hanna A, Venugopal H, Astorkia M, Humeres C, Kubota A, Su K, Zheng D, Frangogiannis NG. Cardiac Pericytes Acquire a Fibrogenic Phenotype and Contribute to Vascular Maturation After Myocardial Infarction. Circulation. PMID 37350296 DOI: 10.1161/CIRCULATIONAHA.123.064155 |
0.079 |
|
2023 |
Lü J, Zhao Q, Guo Y, Li D, Xie H, Liu C, Hu X, Liu S, Hou Z, Wei X, Zheng D, Pestell RG, Yu Z. Regulation of ERα-dependent breast cancer metastasis by a miR-29a signaling. Journal of Experimental & Clinical Cancer Research : Cr. 42: 93. PMID 37081505 DOI: 10.1186/s13046-023-02665-6 |
0.072 |
|
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