Anastasia K. Yocum, Ph.D. - Publications

2006 University of Pennsylvania, Philadelphia, PA, United States 

22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Shankar S, Pitchiaya S, Malik R, Kothari V, Hosono Y, Yocum AK, Gundlapalli H, White Y, Firestone A, Cao X, Dhanasekaran SM, Stuckey JA, Bollag G, Shannon K, Walter NG, et al. KRAS Engages AGO2 to Enhance Cellular Transformation. Cell Reports. PMID 26854235 DOI: 10.1016/j.celrep.2016.01.034  0.44
2015 Malik R, Khan AP, Asangani IA, Cie?lik M, Prensner JR, Wang X, Iyer MK, Jiang X, Borkin D, Escara-Wilke J, Stender R, Wu YM, Niknafs YS, Jing X, Qiao Y, ... ... Yocum AK, et al. Targeting the MLL complex in castration-resistant prostate cancer. Nature Medicine. 21: 344-52. PMID 25822367 DOI: 10.1038/nm.3830  0.44
2014 Banerjee R, Russo N, Liu M, Basrur V, Bellile E, Palanisamy N, Scanlon CS, van Tubergen E, Inglehart RC, Metwally T, Mani RS, Yocum A, Nyati MK, Castilho RM, Varambally S, et al. TRIP13 promotes error-prone nonhomologous end joining and induces chemoresistance in head and neck cancer. Nature Communications. 5: 4527. PMID 25078033 DOI: 10.1038/ncomms5527  0.44
2014 Shanmugam AK, Yocum AK, Nesvizhskii AI. Utility of RNA-seq and GPMDB protein observation frequency for improving the sensitivity of protein identification by tandem MS. Journal of Proteome Research. 13: 4113-9. PMID 25026199 DOI: 10.1021/pr500496p  0.44
2014 Cao Q, Wang X, Zhao M, Yang R, Malik R, Qiao Y, Poliakov A, Yocum AK, Li Y, Chen W, Cao X, Jiang X, Dahiya A, Harris C, Feng FY, et al. The central role of EED in the orchestration of polycomb group complexes. Nature Communications. 5: 3127. PMID 24457600 DOI: 10.1038/ncomms4127  0.44
2013 Balbin OA, Prensner JR, Sahu A, Yocum A, Shankar S, Malik R, Fermin D, Dhanasekaran SM, Chandler B, Thomas D, Beer DG, Cao X, Nesvizhskii AI, Chinnaiyan AM. Reconstructing targetable pathways in lung cancer by integrating diverse omics data. Nature Communications. 4: 2617. PMID 24135919 DOI: 10.1038/ncomms3617  0.44
2013 Khan AP, Rajendiran TM, Ateeq B, Asangani IA, Athanikar JN, Yocum AK, Mehra R, Siddiqui J, Palapattu G, Wei JT, Michailidis G, Sreekumar A, Chinnaiyan AM. The role of sarcosine metabolism in prostate cancer progression. Neoplasia (New York, N.Y.). 15: 491-501. PMID 23633921 DOI: 10.1593/neo.13314  0.44
2011 Wang XS, Shankar S, Dhanasekaran SM, Ateeq B, Sasaki AT, Jing X, Robinson D, Cao Q, Prensner JR, Yocum AK, Wang R, Fries DF, Han B, Asangani IA, Cao X, et al. Characterization of KRAS rearrangements in metastatic prostate cancer. Cancer Discovery. 1: 35-43. PMID 22140652 DOI: 10.1158/2159-8274.CD-10-0022  0.44
2011 Fermin D, Basrur V, Yocum AK, Nesvizhskii AI. Abacus: a computational tool for extracting and pre-processing spectral count data for label-free quantitative proteomic analysis. Proteomics. 11: 1340-5. PMID 21360675 DOI: 10.1002/pmic.201000650  0.44
2010 Yocum AK, Khan AP, Zhao R, Chinnaiyan AM. Development of selected reaction monitoring-MS methodology to measure peptide biomarkers in prostate cancer. Proteomics. 10: 3506-14. PMID 20821805 DOI: 10.1002/pmic.201000023  0.44
2010 Omenn GS, Yocum AK, Menon R. Alternative splice variants, a new class of protein cancer biomarker candidates: findings in pancreatic cancer and breast cancer with systems biology implications. Disease Markers. 28: 241-51. PMID 20534909 DOI: 10.3233/DMA-2010-0702  0.44
2009 Yocum AK, Chinnaiyan AM. Current affairs in quantitative targeted proteomics: multiple reaction monitoring-mass spectrometry. Briefings in Functional Genomics & Proteomics. 8: 145-57. PMID 19279071 DOI: 10.1093/bfgp/eln056  0.44
2009 Ulintz PJ, Yocum AK, Bodenmiller B, Aebersold R, Andrews PC, Nesvizhskii AI. Comparison of MS(2)-only, MSA, and MS(2)/MS(3) methodologies for phosphopeptide identification. Journal of Proteome Research. 8: 887-99. PMID 19072539 DOI: 10.1021/pr800535h  0.44
2008 Jeong Y, Leskow FC, El-Jaick K, Roessler E, Muenke M, Yocum A, Dubourg C, Li X, Geng X, Oliver G, Epstein DJ. Regulation of a remote Shh forebrain enhancer by the Six3 homeoprotein. Nature Genetics. 40: 1348-53. PMID 18836447 DOI: 10.1038/ng.230  0.44
2008 Falkner JA, Falkner JW, Yocum AK, Andrews PC. A spectral clustering approach to MS/MS identification of post-translational modifications. Journal of Proteome Research. 7: 4614-22. PMID 18800783 DOI: 10.1021/pr800226w  0.44
2008 Yocum AK, Gratsch TE, Leff N, Strahler JR, Hunter CL, Walker AK, Michailidis G, Omenn GS, O'Shea KS, Andrews PC. Coupled global and targeted proteomics of human embryonic stem cells during induced differentiation. Molecular & Cellular Proteomics : McP. 7: 750-67. PMID 18304949 DOI: 10.1074/mcp.M700399-MCP200  0.44
2008 Lucitt MB, Price TS, Pizarro A, Wu W, Yocum AK, Seiler C, Pack MA, Blair IA, Fitzgerald GA, Grosser T. Analysis of the zebrafish proteome during embryonic development. Molecular & Cellular Proteomics : McP. 7: 981-94. PMID 18212345 DOI: 10.1074/mcp.M700382-MCP200  0.44
2008 Reinert K, Conrad T, Kohlbacher O. Bioinformatics: Bioinformatics Support for Mass Spectrometric Quality Control Proteomics Sample Preparation. 423-432. DOI: 10.1002/9783527622832.ch13  0.44
2007 Price TS, Lucitt MB, Wu W, Austin DJ, Pizarro A, Yocum AK, Blair IA, FitzGerald GA, Grosser T. EBP, a program for protein identification using multiple tandem mass spectrometry datasets. Molecular & Cellular Proteomics : McP. 6: 527-36. PMID 17164401 DOI: 10.1074/mcp.T600049-MCP200  0.44
2006 Yocum AK, Busch CM, Felix CA, Blair IA. Proteomics-based strategy to identify biomarkers and pharmacological targets in leukemias with t(4;11) translocations. Journal of Proteome Research. 5: 2743-53. PMID 17022645 DOI: 10.1021/pr060235v  0.44
2005 Yocum AK, Yu K, Oe T, Blair IA. Effect of immunoaffinity depletion of human serum during proteomic investigations. Journal of Proteome Research. 4: 1722-31. PMID 16212426 DOI: 10.1021/pr0501721  0.44
2005 Yocum AK, Oe T, Yergey AL, Blair IA. Novel lipid hydroperoxide-derived hemoglobin histidine adducts as biomarkers of oxidative stress. Journal of Mass Spectrometry : Jms. 40: 754-64. PMID 15827957 DOI: 10.1002/jms.847  0.44
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