Tricia N. Lively, Ph.D. - Related publications

2002 University of Colorado, Boulder, Boulder, CO, United States 
Biochemistry, Molecular Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Palacio M, Taatjes DJ. Merging Established Mechanisms with New Insights: Condensates, Hubs, and the Regulation of RNA Polymerase II Transcription. Journal of Molecular Biology. 167216. PMID 34474085 DOI: 10.1016/j.jmb.2021.167216   
2021 Ren Y, Huo Y, Li W, He M, Liu S, Yang J, Zhao H, Xu L, Guo Y, Si Y, Zhao H, Rao S, Wang J, Ma Y, Wang X, et al. A global screening identifies chromatin-enriched RNA-binding proteins and the transcriptional regulatory activity of QKI5 during monocytic differentiation. Genome Biology. 22: 290. PMID 34649616 DOI: 10.1186/s13059-021-02508-7   
2021 Bai W, Wells ML, Lai WS, Hicks SN, Burkholder AB, Perera L, Kimmel AR, Blackshear PJ. A post-transcriptional regulon controlled by TtpA, the single tristetraprolin family member expressed in Dictyostelium discoideum. Nucleic Acids Research. PMID 34718768 DOI: 10.1093/nar/gkab983   
2021 Gui L, Raza SHA, Ma B, Easa AA, Althobaiti F, Shukry M, Alotaibi MA, Al Hazani TMI, Dawood MAO, Khan R, Jahejo AR, Shater AF, Abd El-Aziz AH, Quan G, Alanbari KH, et al. CEBPβ binding directly to the promoter region drives CEBPɑ transcription and improves FABP4 transcriptional activity in adipose tissue of yak (Bos grunniens). Research in Veterinary Science. 141: 174-179. PMID 34749102 DOI: 10.1016/j.rvsc.2021.10.018   
2021 Napoli RS, Allen PJ, Parish RW, Li SF. The MYB5 transcription factor interacts with CASEIN KINASE2 BETA3 subunit in a yeast two-hybrid system. Micropublication Biology. 2021. PMID 34723145 DOI: 10.17912/micropub.biology.000486   
2021 Sun QX, Huang XN, Pan Y, Yao CL. Promoter analysis of TLR5M and TLR5S revealed NF-κB might be a conserved cis-element in TLR5S promoter of large yellow croaker. Comparative Biochemistry and Physiology. Part B, Biochemistry & Molecular Biology. 257: 110675. PMID 34637922 DOI: 10.1016/j.cbpb.2021.110675   
2021 Mohanty BK, Kushner SR. Regulation of mRNA decay in . Critical Reviews in Biochemistry and Molecular Biology. 1-25. PMID 34547957 DOI: 10.1080/10409238.2021.1968784   
2021 de Almeida M, Hinterndorfer M, Brunner H, Grishkovskaya I, Singh K, Schleiffer A, Jude J, Deswal S, Kalis R, Vunjak M, Lendl T, Imre R, Roitinger E, Neumann T, Kandolf S, et al. AKIRIN2 controls the nuclear import of proteasomes in vertebrates. Nature. PMID 34711951 DOI: 10.1038/s41586-021-04035-8   
2021 Yan L, Baoxiang W, Jingfang L, Zhiguang S, Ming C, Yungao X, Bo X, Bo Y, Jian L, Jinbo L, Tingmu C, Zhaowei F, Baiguan L, Dayong X, Bello BK. A novel SAPK10-WRKY87-ABF1 biological pathway synergistically enhance abiotic stress tolerance in transgenic rice (Oryza sativa). Plant Physiology and Biochemistry : Ppb. 168: 252-262. PMID 34656861 DOI: 10.1016/j.plaphy.2021.10.006   
2021 Appel LM, Franke V, Bruno M, Grishkovskaya I, Kasiliauskaite A, Kaufmann T, Schoeberl UE, Puchinger MG, Kostrhon S, Ebenwaldner C, Sebesta M, Beltzung E, Mechtler K, Lin G, Vlasova A, et al. PHF3 regulates neuronal gene expression through the Pol II CTD reader domain SPOC. Nature Communications. 12: 6078. PMID 34667177 DOI: 10.1038/s41467-021-26360-2   
2021 Perry JK, Appleby TC, Bilello JP, Feng JY, Schmitz U, Campbell EA. An atomistic model of the coronavirus replication-transcription complex as a hexamer assembled around nsp15. The Journal of Biological Chemistry. 101218. PMID 34562452 DOI: 10.1016/j.jbc.2021.101218   
2021 Jeon HJ, Lee Y, N MPA, Wang X, Chattoraj DK, Lim HM. sRNA-mediated regulation of gal mRNA in E. coli: Involvement of transcript cleavage by RNase E together with Rho-dependent transcription termination. Plos Genetics. 17: e1009878. PMID 34710092 DOI: 10.1371/journal.pgen.1009878   
2021 Huang Y, Duan X, Wang Z, Sun Y, Guan Q, Kang L, Zhang Q, Fang L, Li J, Wong J. An acetylation-enhanced interaction between transcription factor Sox2 and the steroid receptor coactivators facilitates Sox2 transcriptional activity and function. The Journal of Biological Chemistry. 101389. PMID 34762910 DOI: 10.1016/j.jbc.2021.101389   
2021 Dhungel BP, Monteuuis G, Giardina C, Tabar MS, Feng Y, Metierre C, Ho S, Nagarajah R, Fontaine ARM, Shah JS, Gokal D, Bailey CG, Schmitz U, Rasko JEJ. The Fusion of and Arises from a -Splicing Event in Normal and Transformed Human Cells. International Journal of Molecular Sciences. 22. PMID 34830054 DOI: 10.3390/ijms222212178   
2021 Ren X, Zhi L, Liu L, Meng D, Su Q, Batool A, Ji J, Song L, Zhang N, Guo L, Liu X, Li J, Zhang W. Alternative Splicing of Differentially Regulates Grain Weight and Size in Bread Wheat. International Journal of Molecular Sciences. 22. PMID 34769129 DOI: 10.3390/ijms222111692   
2021 Irigoyen S, Ramasamy M, Misra A, McKnight TD, Mandadi KK. A BTB-TAZ protein is required for gene activation by Cauliflower mosaic virus 35S multimerized enhancers. Plant Physiology. PMID 34597402 DOI: 10.1093/plphys/kiab450   
2021 Zhao T, Vvedenskaya IO, Lai WK, Basu S, Pugh BF, Nickels BE, Kaplan CD. Ssl2/TFIIH function in transcription start site scanning by RNA Polymerase II in . Elife. 10. PMID 34652274 DOI: 10.7554/eLife.71013   
2021 Xie Y, Ma M, Liu Y, Wang B, Wei H, Kong D, Wang H. and Function in Age Gating of Leaf Senescence. Frontiers in Plant Science. 12: 770060. PMID 34777451 DOI: 10.3389/fpls.2021.770060   
2021 Wood KA, Ellingford JM, Thomas HB, , Douzgou S, Beaman GM, Hobson E, Prescott K, O'Keefe RT, Newman WG. Expanding the genotypic spectrum of TXNL4A variants in Burn-McKeown syndrome. Clinical Genetics. PMID 34713892 DOI: 10.1111/cge.14082   
2021 von Elsner L, Chai G, Schneeberger PE, Harms FL, Casar C, Qi M, Alawi M, Abdel-Salam GMH, Zaki MS, Arndt F, Yang X, Stanley V, Hempel M, Gleeson JG, Kutsche K. Biallelic FRA10AC1 variants cause a neurodevelopmental disorder with growth retardation. Brain : a Journal of Neurology. PMID 34694367 DOI: 10.1093/brain/awab403   
2021 Zou X, Hu X, He F, Zhang M, Kong X, Rui S, Liu Y, Wang L, Zheng X, Liu J, Li Z, Luo H. LncRNA LINC00152 promotes oral squamous cell carcinoma growth via enhancing Upstream Transcription Factor 1 mediated Mitochondrial Ribosomal Protein L52 transcription. Journal of Oral Pathology & Medicine : Official Publication of the International Association of Oral Pathologists and the American Academy of Oral Pathology. PMID 34664331 DOI: 10.1111/jop.13253   
2021 Webster MW, Weixlbaumer A. Macromolecular assemblies supporting transcription-translation coupling. Transcription. 1-23. PMID 34570660 DOI: 10.1080/21541264.2021.1981713   
2021 Laliotis GI, Kenney AD, Chavdoula E, Orlacchio A, Kaba A, La Ferlita A, Anastas V, Tsatsanis C, Beane JD, Sehgal L, Coppola V, Yount JS, Tsichlis PN. Phosphor-IWS1-dependent U2AF2 splicing regulates trafficking of CAR-E-positive intronless gene mRNAs and sensitivity to viral infection. Communications Biology. 4: 1179. PMID 34635782 DOI: 10.1038/s42003-021-02668-z   
2021 Wang Y, Sun L, Wang L, Yu H, Yu X, Zou Y. modulates trophoblast cell proliferation and migration through . Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 1-6. PMID 34734756 DOI: 10.1139/bcb-2021-0044   
2021 Im JSH, Newburn LR, Kent G, White KA. -Activator Binding Site Context in RCNMV Modulates Subgenomic mRNA Transcription. Viruses. 13. PMID 34835058 DOI: 10.3390/v13112252   
2021 Rivera C, Verbel-Vergara D, Arancibia D, Lappala A, González M, Guzmán F, Merello G, Lee JT, Andrés ME. Revealing RCOR2 as a regulatory component of nuclear speckles. Epigenetics & Chromatin. 14: 51. PMID 34819154 DOI: 10.1186/s13072-021-00425-4   
2021 Rofes P, Pineda M, Feliubadaló L, Menéndez M, de Cid R, Gómez C, Montes E, Capellá G, Brunet J, Del Valle J, Lázaro C. RNA assay identifies a previous misclassification of BARD1 c.1977A>G variant. Scientific Reports. 11: 22948. PMID 34824355 DOI: 10.1038/s41598-021-02465-y   
2021 Tanabe T, Miyamoto K, Nagaoka K, Tsujibo H, Funahashi T. Binding of AraC-Type Activator DesR to the Promoter Region of Vibrio vulnificus Ferrioxamine B Receptor Gene. Biological & Pharmaceutical Bulletin. 44: 1790-1795. PMID 34719655 DOI: 10.1248/bpb.b21-00372   
2021 Zhang J, Zhang G, Miao Y. Identification, Molecular Characterization, and Tissue Expression Profiles of Three Genes from Water Buffalo (). Genes. 12. PMID 34680931 DOI: 10.3390/genes12101536   
2021 Xu J, Richard S. Cellular pathways influenced by protein arginine methylation: Implications for cancer. Molecular Cell. 81: 4357-4368. PMID 34619091 DOI: 10.1016/j.molcel.2021.09.011   
2021 Yadav S, Pant D, Samaiya A, Kalra N, Gupta S, Shukla S. ERK1/2-EGR1-SRSF10 Axis Mediated Alternative Splicing Plays a Critical Role in Head and Neck Cancer. Frontiers in Cell and Developmental Biology. 9: 713661. PMID 34616729 DOI: 10.3389/fcell.2021.713661   
2021 Shah A, Mittleman BE, Gilad Y, Li YI. Benchmarking sequencing methods and tools that facilitate the study of alternative polyadenylation. Genome Biology. 22: 291. PMID 34649612 DOI: 10.1186/s13059-021-02502-z   
2021 Arribas-Hernández L, Rennie S, Schon M, Porcelli C, Enugutti B, Andersson R, Nodine MD, Brodersen P. The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation. Elife. 10. PMID 34591013 DOI: 10.7554/eLife.72377   
2021 Santiago J, Silva JV, Howl J, Santos MAS, Fardilha M. All you need to know about sperm RNAs. Human Reproduction Update. PMID 34624094 DOI: 10.1093/humupd/dmab034   
2021 Smith MR, Costa G. RNA-binding proteins and translation control in angiogenesis. The Febs Journal. PMID 34796614 DOI: 10.1111/febs.16286   
2021 Zou P, Li K, Li Y, Shen Y, Zhang Z, Wang Y. RIP3 Associates with RIP1, TRIF, MAVS, and Also IRF3/7 in Host Innate Immune Signaling in Large Yellow Croaker . Antibiotics (Basel, Switzerland). 10. PMID 34680780 DOI: 10.3390/antibiotics10101199   
2021 Abbas MN, Kausar S, Gul I, Ke XX, Dong Z, Lu X, Cui H. Suppressor of cytokine signalling 6 is a potential regulator of antimicrobial peptides in the Chinese oak silkworm, Antheraea pernyi. Molecular Immunology. 140: 12-21. PMID 34628136 DOI: 10.1016/j.molimm.2021.10.001   
2021 He X, Yuan J, Wang Y. G3BP1 binds to guanine quadruplexes in mRNAs to modulate their stabilities. Nucleic Acids Research. PMID 34614161 DOI: 10.1093/nar/gkab873   
2021 Yueh LY, Tseng YT, Chu CY, Lo KY. The dedicated chaperones of eL43, Puf6 and Loc1, can also bind RPL43 mRNA and regulate the production of this ribosomal protein. Journal of Biochemistry. PMID 34661244 DOI: 10.1093/jb/mvab110   
2021 Wai AH, Cho LH, Peng X, Waseem M, Lee DJ, Lee JM, Kim CK, Chung MY. Genome-wide identification and expression profiling of Alba gene family members in response to abiotic stress in tomato (Solanum lycopersicum L.). Bmc Plant Biology. 21: 530. PMID 34772358 DOI: 10.1186/s12870-021-03310-0   
2021 Feng H, Wan C, Zhang Z, Chen H, Li Z, Jiang H, Yin M, Dong S, Dou D, Wang Y, Zheng X, Ye W. Specific interaction of an RNA-binding protein with the 3'-UTR of its target mRNA is critical to oomycete sexual reproduction. Plos Pathogens. 17: e1010001. PMID 34648596 DOI: 10.1371/journal.ppat.1010001   
2021 Beaudoin J, Normant V, Brault A, Henry DJ, Bachand F, Massé É, Chua G, Labbé S. Fission yeast RNA-binding proteins Puf2 and Puf4 are involved in repression of ferrireductase Frp1 expression in response to iron. Molecular Microbiology. PMID 34614242 DOI: 10.1111/mmi.14829   
2021 Li Y, Li J, Wang J, Lynch DR, Shen X, R Corey D, Parekh D, Bhat B, Woo C, Cherry JJ, Napierala JS, Napierala M. Targeting 3' and 5' untranslated regions with antisense oligonucleotides to stabilize frataxin mRNA and increase protein expression. Nucleic Acids Research. PMID 34718736 DOI: 10.1093/nar/gkab954   
2021 Zhang L, Sun K, Li Y, Ma T, Zhang YU, Yin YN, Zhang S, Shao W. The importin FgPse1 is required for vegetative development, virulence and DON production by interacting with the nuclear polyadenylated RNA-binding protein FgNab2 in . Phytopathology. PMID 34784736 DOI: 10.1094/PHYTO-08-21-0357-R   
2021 Missios P, da Rocha EL, Pearson DS, Philipp J, Aleman MM, Pirouz M, Farache D, Franses JW, Kubaczka C, Tsanov KM, Jha DK, Pepe-Mooney B, Powers JT, Gregory RI, Lee AS, et al. LIN28B alters ribosomal dynamics to promote metastasis in MYCN-driven malignancy. The Journal of Clinical Investigation. 131. PMID 34779407 DOI: 10.1172/JCI145142   
2021 Neault N, O'Reilly S, Baig AT, Plaza-Diaz J, Azimi M, Farooq F, Baird SD, MacKenzie A. High-throughput kinome-RNAi screen identifies protein kinase R activator (PACT) as a novel genetic modifier of CUG foci integrity in myotonic dystrophy type 1 (DM1). Plos One. 16: e0256276. PMID 34520479 DOI: 10.1371/journal.pone.0256276   
2021 Kusnadi EP, Timpone C, Topisirovic I, Larsson O, Furic L. Regulation of gene expression via translational buffering. Biochimica Et Biophysica Acta. Molecular Cell Research. 1869: 119140. PMID 34599983 DOI: 10.1016/j.bbamcr.2021.119140   
2021 Dahlbäck B, Tran S. The preAR2 region (1458-1492) in factor V-Short is crucial for the synergistic TFPIα-cofactor activity with protein S and the assembly of a trimolecular factor Xa-inhibitory complex comprising FV-Short, protein S, and TFPIα. Journal of Thrombosis and Haemostasis : Jth. PMID 34623729 DOI: 10.1111/jth.15547   
2021 Yu H, Kim TY, Moon SJ, Chung YN, Yoo HJ, Kim JH, Cho D. Sequence variants in the proximal promoter and +5.8-kb site of ABO in Koreans with weak B phenotypes. Vox Sanguinis. PMID 34651317 DOI: 10.1111/vox.13207   
2021 Müller C, Eickelmann C, Sponholz D, Hildebrandt JP. Short tail stories: the hirudin-like factors HLF6 and HLF7 of the Asian medicinal leech, Hirudinaria manillensis. Parasitology Research. 120: 3761-3769. PMID 34599360 DOI: 10.1007/s00436-021-07316-3