Song Qin, Ph.D. - Related publications

Affiliations: 
2005 Ohio State University, Columbus, Columbus, OH 
Area:
Molecular Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Talbert PB, Henikoff S. Histone variants at a glance. Journal of Cell Science. 134. PMID 33771851 DOI: 10.1242/jcs.244749   
2021 Min J, Liu K. Structures of chromatin modulators in complex with nucleosome. Current Opinion in Chemical Biology. 63: 105-114. PMID 33823458 DOI: 10.1016/j.cbpa.2021.02.018   
2021 Li Y, Chen X, Lu C. The interplay between DNA and histone methylation: molecular mechanisms and disease implications. Embo Reports. e51803. PMID 33844406 DOI: 10.15252/embr.202051803   
2021 Valencia-Sánchez MI, Abini-Agbomson S, Wang M, Lee R, Vasilyev N, Zhang J, De Ioannes P, La Scola B, Talbert P, Henikoff S, Nudler E, Erives A, Armache KJ. The structure of a virus-encoded nucleosome. Nature Structural & Molecular Biology. PMID 33927388 DOI: 10.1038/s41594-021-00585-7   
2021 Soo VWC, Warnecke T. Slaying the last unicorn: discovery of histones in the microalga . Royal Society Open Science. 8: 202023. PMID 33972876 DOI: 10.1098/rsos.202023   
2021 Chen P, Li W, Li G. Structures and Functions of Chromatin Fibers. Annual Review of Biophysics. 50: 95-116. PMID 33957053 DOI: 10.1146/annurev-biophys-062920-063639   
2021 Talbert PB, Henikoff S. The Yin and Yang of Histone Marks in Transcription. Annual Review of Genomics and Human Genetics. PMID 33781079 DOI: 10.1146/annurev-genom-120220-085159   
2021 Hammond CM, Bao H, Hendriks IA, Carraro M, García-Nieto A, Liu Y, Reverón-Gómez N, Spanos C, Chen L, Rappsilber J, Nielsen ML, Patel DJ, Huang H, Groth A. DNAJC9 integrates heat shock molecular chaperones into the histone chaperone network. Molecular Cell. PMID 33857403 DOI: 10.1016/j.molcel.2021.03.041   
2021 Morrison EA, Baweja L, Poirier MG, Wereszczynski J, Musselman CA. Nucleosome composition regulates the histone H3 tail conformational ensemble and accessibility. Nucleic Acids Research. PMID 33856458 DOI: 10.1093/nar/gkab246   
2021 Zappacosta F, Wagner CD, Della Pietra A, Gerhart SV, Keenan K, Korenchuck S, Quinn CJ, Barbash O, McCabe MT, Annan RS. A Chemical Acetylation based Mass Spectrometry Platform for Histone Methylation Profiling. Molecular & Cellular Proteomics : McP. 100067. PMID 33775892 DOI: 10.1016/j.mcpro.2021.100067   
2021 Zhou M, Abdali SH, Dilworth D, Liu L, Cole B, Malhan N, Ahkami AH, Winkler TE, Hollingsworth J, Sievert J, Dahlberg J, Hutmacher R, Madera M, Owiti JA, Hixson KK, et al. Isolation of Histone from Sorghum Leaf Tissue for Top Down Mass Spectrometry Profiling of Potential Epigenetic Markers. Journal of Visualized Experiments : Jove. PMID 33749685 DOI: 10.3791/61707   
2021 Zhou M, Abdali SH, Dilworth D, Liu L, Cole B, Malhan N, Ahkami AH, Winkler TE, Hollingsworth J, Sievert J, Dahlberg J, Hutmacher R, Madera M, Owiti JA, Hixson KK, et al. Isolation of Histone from Sorghum Leaf Tissue for Top Down Mass Spectrometry Profiling of Potential Epigenetic Markers. Journal of Visualized Experiments : Jove. PMID 33749685 DOI: 10.3791/61707   
2021 Strohkendl I, Saifuddin FA, Gibson BA, Rosen MK, Russell R, Finkelstein IJ. Inhibition of CRISPR-Cas12a DNA targeting by nucleosomes and chromatin. Science Advances. 7. PMID 33692102 DOI: 10.1126/sciadv.abd6030   
2021 Fortuny A, Chansard A, Caron P, Chevallier O, Leroy O, Renaud O, Polo SE. Imaging the response to DNA damage in heterochromatin domains reveals core principles of heterochromatin maintenance. Nature Communications. 12: 2428. PMID 33893291 DOI: 10.1038/s41467-021-22575-5   
2021 Espiritu D, Gribkova AK, Gupta S, Shaytan AK, Panchenko AR. Molecular Mechanisms of Oncogenesis through the Lens of Nucleosomes and Histones. The Journal of Physical Chemistry. B. PMID 33769808 DOI: 10.1021/acs.jpcb.1c00694   
2021 Shi J, Ma Y, Hua H, Liu Y, Li W, Yu H, Liu C. Dynamic Histone H3 Modifications Regulate Meiosis Initiation via Respiration. Frontiers in Cell and Developmental Biology. 9: 646214. PMID 33869198 DOI: 10.3389/fcell.2021.646214   
2021 Cruz-Becerra G, Kadonaga JT. Reconstitution of Chromatin by Stepwise Salt Dialysis. Bio-Protocol. 11: e3977. PMID 33889671 DOI: 10.21769/BioProtoc.3977   
2021 Guan R, Lian T, Zhou BR, He E, Wu C, Singleton M, Bai Y. Structural and dynamic mechanisms of CBF3-guided centromeric nucleosome formation. Nature Communications. 12: 1763. PMID 33741944 DOI: 10.1038/s41467-021-21985-9   
2021 Liu Y, Zhang Y, Xue H, Cao M, Bai G, Mu Z, Yao Y, Sun S, Fang D, Huang J. Cryo-EM structure of SETD2/Set2 methyltransferase bound to a nucleosome containing oncohistone mutations. Cell Discovery. 7: 32. PMID 33972509 DOI: 10.1038/s41421-021-00261-6   
2021 Ban H, Sun W, Chen YH, Chen Y, Li F. Dri1 mediates heterochromatin assembly via RNAi and histone deacetylation. Genetics. PMID 33693625 DOI: 10.1093/genetics/iyab032   
2021 Rossmann MP, Zon LI. 'Enhancing' red cell fate through epigenetic mechanisms. Current Opinion in Hematology. PMID 33741760 DOI: 10.1097/MOH.0000000000000654   
2021 Nevil M, Duronio RJ. The awesome power of histone genetics. Molecular Cell. 81: 1593-1595. PMID 33861947 DOI: 10.1016/j.molcel.2021.03.023   
2021 Lu C, Coradin M, Janssen KA, Sidoli S, Garcia BA. Combinatorial Histone H3 Modifications Are Dynamically Altered in Distinct Cell Cycle Phases. Journal of the American Society For Mass Spectrometry. PMID 33818074 DOI: 10.1021/jasms.0c00451   
2021 Jarome TJ, Perez GA, Webb WM, Hatch KM, Navabpour S, Musaus M, Farrell K, Hauser RM, McFadden T, Martin K, Butler AA, Wang J, Lubin FD. Ubiquitination of Histone H2B by Proteasome Subunit RPT6 Controls Histone Methylation Chromatin Dynamics During Memory Formation. Biological Psychiatry. PMID 33934885 DOI: 10.1016/j.biopsych.2020.12.029   
2021 Jooß K, Schachner LF, Watson R, Gillespie ZB, Howard SA, Cheek MA, Meiners MJ, Sobh A, Licht JD, Keogh MC, Kelleher NL. Separation and Characterization of Endogenous Nucleosomes by Native Capillary Zone Electrophoresis-Top-Down Mass Spectrometry. Analytical Chemistry. PMID 33749242 DOI: 10.1021/acs.analchem.0c04975   
2021 Tripuraneni V, Memisoglu G, MacAlpine HK, Tran TQ, Zhu W, Hartemink AJ, Haber JE, MacAlpine DM. Local nucleosome dynamics and eviction following a double-strand break are reversible by NHEJ-mediated repair. Genome Research. PMID 33811083 DOI: 10.1101/gr.271155.120   
2021 Wolff MR, Schmid A, Korber P, Gerland U. Effective dynamics of nucleosome configurations at the yeast promoter. Elife. 10. PMID 33666171 DOI: 10.7554/eLife.58394   
2021 Ren W, Fan H, Grimm SA, Kim JJ, Li L, Guo Y, Petell CJ, Tan XF, Zhang ZM, Coan JP, Yin J, Kim DI, Gao L, Cai L, Khudaverdyan N, et al. DNMT1 reads heterochromatic H4K20me3 to reinforce LINE-1 DNA methylation. Nature Communications. 12: 2490. PMID 33941775 DOI: 10.1038/s41467-021-22665-4   
2021 Maeshima K, Iida S, Tamura S. Physical Nature of Chromatin in the Nucleus. Cold Spring Harbor Perspectives in Biology. PMID 33820775 DOI: 10.1101/cshperspect.a040675   
2021 Jiang X, Jiang L, Cheng J, Chen F, Ni J, Yin C, Wang Q, Wang Z, Fang D, Yi Z, Yu G, Zhong Q, Carter BZ, Meng F. Inhibition of EZH2 by chidamide exerts antileukemia activity and increases chemosensitivity through Smo/Gli-1 pathway in acute myeloid leukemia. Journal of Translational Medicine. 19: 117. PMID 33743723 DOI: 10.1186/s12967-021-02789-3   
2021 Zhang Y, Fang D. The incorporation loci of H3.3K36M determine its preferential prevalence in chondroblastomas. Cell Death & Disease. 12: 311. PMID 33762579 DOI: 10.1038/s41419-021-03597-9   
2021 Nickels JF, Edwards AK, Charlton SJ, Mortensen AM, Hougaard SCL, Trusina A, Sneppen K, Thon G. Establishment of heterochromatin in domain-size-dependent bursts. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33827924 DOI: 10.1073/pnas.2022887118   
2021 Kelliher J, Ghosal G, Leung JWC. New answers to the old RIDDLE: RNF168 and the DNA damage response pathway. The Febs Journal. PMID 33797206 DOI: 10.1111/febs.15857   
2021 Garmpis N, Damaskos C, Garmpi A, Georgakopoulou VE, Sarantis P, Antoniou EA, Karamouzis MV, Nonni A, Schizas D, Diamantis E, Koustas E, Farmaki P, Syllaios A, Patsouras A, Kontzoglou K, et al. Histone Deacetylase Inhibitors in the Treatment of Hepatocellular Carcinoma: Current Evidence and Future Opportunities. Journal of Personalized Medicine. 11. PMID 33809844 DOI: 10.3390/jpm11030223   
2021 Salim D, Bradford WD, Rubinstein B, Gerton JL. DNA replication, transcription, and H3K56 acetylation regulate copy number and stability at tandem repeats. G3 (Bethesda, Md.). PMID 33729510 DOI: 10.1093/g3journal/jkab082   
2021 Farnung L, Ochmann M, Engeholm M, Cramer P. Structural basis of nucleosome transcription mediated by Chd1 and FACT. Nature Structural & Molecular Biology. 28: 382-387. PMID 33846633 DOI: 10.1038/s41594-021-00578-6   
2021 Zhou JX, Du P, Liu ZW, Feng C, Cai XW, He XJ. FVE promotes RNA-directed DNA methylation by facilitating the association of RNA polymerase V with chromatin. The Plant Journal : For Cell and Molecular Biology. PMID 33942410 DOI: 10.1111/tpj.15302   
2021 Cole L, Kurscheid S, Nekrasov M, Domaschenz R, Vera DL, Dennis JH, Tremethick DJ. Multiple roles of H2A.Z in regulating promoter chromatin architecture in human cells. Nature Communications. 12: 2524. PMID 33953180 DOI: 10.1038/s41467-021-22688-x   
2021 Li K, Han J, Wang Z. Histone modifications centric-regulation in osteogenic differentiation. Cell Death Discovery. 7: 91. PMID 33941771 DOI: 10.1038/s41420-021-00472-6   
2021 Jiang J, Zhu J, Liu Q, Zhang T, Wen J, Xia J, Deng Y. Role of DNA methylation-related chromatin remodeling in aryl hydrocarbon receptor-dependent regulation of T-2 toxin highly inducible Cytochrome P450 1A4 gene. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 35: e21469. PMID 33788981 DOI: 10.1096/fj.202002570RR   
2021 Liu Y, Wang Y, Yang L, Sun F, Li S, Wang Y, Zhang GA, Dong T, Zhang LL, Duan W, Zhang X, Cui W, Chen S. The nucleolus functions as the compartment for histone H2B protein degradation. Iscience. 24: 102256. PMID 33796843 DOI: 10.1016/j.isci.2021.102256   
2021 Konrad SF, Vanderlinden W, Frederickx W, Brouns T, Menze BH, De Feyter S, Lipfert J. High-throughput AFM analysis reveals unwrapping pathways of H3 and CENP-A nucleosomes. Nanoscale. 13: 5435-5447. PMID 33683227 DOI: 10.1039/d0nr08564b   
2021 Datta M, Staszewski O. Hdac1 and Hdac2 are essential for physiological maturation of a Cx3cr1 expressing subset of T-lymphocytes. Bmc Research Notes. 14: 135. PMID 33849645 DOI: 10.1186/s13104-021-05551-6   
2021 Gan L, Wei Z, Yang Z, Li F, Wang Z. Updated Mechanisms of GCN5-The Monkey King of the Plant Kingdom in Plant Development and Resistance to Abiotic Stresses. Cells. 10. PMID 33922251 DOI: 10.3390/cells10050979   
2021 Marchione AD, Thompson Z, Kathrein KL. DNA methylation and histone modifications are essential for regulation of stem cell formation and differentiation in zebrafish development. Briefings in Functional Genomics. PMID 33782688 DOI: 10.1093/bfgp/elab022   
2021 Viktorovskaya O, Chuang J, Jain D, Reim NI, López-Rivera F, Murawska M, Spatt D, Churchman LS, Park PJ, Winston F. Essential histone chaperones collaborate to regulate transcription and chromatin integrity. Genes & Development. PMID 33888559 DOI: 10.1101/gad.348431.121   
2021 Bragantini B, Charron C, Bourguet M, Paul A, Tiotiu D, Rothé B, Marty H, Terral G, Hessmann S, Decourty L, Chagot ME, Strub JM, Massenet S, Bertrand E, Quinternet M, et al. The box C/D snoRNP assembly factor Bcd1 interacts with the histone chaperone Rtt106 and controls its transcription dependent activity. Nature Communications. 12: 1859. PMID 33767140 DOI: 10.1038/s41467-021-22077-4   
2021 Yu J, Chai P, Xie M, Ge S, Ruan J, Fan X, Jia R. Histone lactylation drives oncogenesis by facilitating mA reader protein YTHDF2 expression in ocular melanoma. Genome Biology. 22: 85. PMID 33726814 DOI: 10.1186/s13059-021-02308-z   
2021 Tran TQ, MacAlpine HK, Tripuraneni V, Mitra S, MacAlpine DM, Hartemink AJ. Linking the dynamics of chromatin occupancy and transcription with predictive models. Genome Research. PMID 33893157 DOI: 10.1101/gr.267237.120   
2021 Shen X, Li Y, Xu Y, Liu M, Zhang Q, Yin R, Zhou M, Lin S, Fan H. Hypoxia inducible factor-1α cooperates with histone Lys methylation to predict prognosis in esophageal squamous cell carcinoma. Biomarkers in Medicine. PMID 33856264 DOI: 10.2217/bmm-2020-0256