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Ramkrishna Mitra - Publications

Affiliations: 
Machine Intelligence Unit Indian Statistical Institute, Baranagar, West Bengal, India 
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26 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Yousef M, Goy G, Mitra R, Eischen CM, Jabeer A, Bakir-Gungor B. miRcorrNet: machine learning-based integration of miRNA and mRNA expression profiles, combined with feature grouping and ranking. Peerj. 9: e11458. PMID 34055490 DOI: 10.7717/peerj.11458  0.325
2020 Fritah S, Muller A, Jiang W, Mitra R, Sarmini M, Dieterle M, Golebiewska A, Ye T, Van Dyck E, Herold-Mende C, Zhao Z, Azuaje F, Niclou SP. Temozolomide-Induced RNA Interactome Uncovers Novel LncRNA Regulatory Loops in Glioblastoma. Cancers. 12. PMID 32927769 DOI: 10.3390/Cancers12092583  0.349
2020 Mitra R, Adams CM, Jiang W, Greenawalt E, Eischen CM. Pan-cancer analysis reveals cooperativity of both strands of microRNA that regulate tumorigenesis and patient survival. Nature Communications. 11: 968. PMID 32080184 DOI: 10.1038/S41467-020-14713-2  0.468
2020 Qin G, Mallik S, Mitra R, Li A, Jia P, Eischen CM, Zhao Z. MicroRNA and transcription factor co-regulatory networks and subtype classification of seminoma and non-seminoma in testicular germ cell tumors. Scientific Reports. 10: 852. PMID 31965022 DOI: 10.1038/S41598-020-57834-W  0.452
2018 Greenawalt EJ, Edmonds MD, Jain N, Adams CM, Mitra R, Eischen CM. Targeting of SGK1 by miR-576-3p inhibits lung adenocarcinoma migration and invasion. Molecular Cancer Research : McR. PMID 30257988 DOI: 10.1158/1541-7786.Mcr-18-0364  0.358
2017 Mitra R, Chen X, Greenawalt EJ, Maulik U, Jiang W, Zhao Z, Eischen CM. Decoding critical long non-coding RNA in ovarian cancer epithelial-to-mesenchymal transition. Nature Communications. 8: 1604. PMID 29150601 DOI: 10.1038/S41467-017-01781-0  0.348
2017 Adams CM, Kim AS, Mitra R, Choi JK, Gong JZ, Eischen CM. BCL-W has a fundamental role in B cell survival and lymphomagenesis. The Journal of Clinical Investigation. PMID 28094768 DOI: 10.1172/Jci89486  0.335
2017 Adams CM, Mitra R, Gong JZ, Kim AS, Choi JK, Eischen CM. Abstract 02: BCL-W significantly contributes to B-cell lymphoma survival and development Clinical Cancer Research. 23: 2-2. DOI: 10.1158/1557-3265.Hemmal17-02  0.325
2016 Liu S, Mitra R, Zhao MM, Fan W, Eischen CM, Yin F, Zhao Z. The potential roles of long non-coding RNAs (lncRNAs) in glioblastoma development. Molecular Cancer Therapeutics. PMID 27784795 DOI: 10.1158/1535-7163.Mct-16-0320  0.343
2016 Edmonds MD, Boyd KL, Moyo TK, Mitra R, Duszynski RJ, Arrate MP, Chen X, Zhao Z, Blackwell TS, Eischen CM. Abstract LB-168: MicroRNA-31 initiates lung tumorigenesis and promotes mutant KRAS-driven lung cancer Cancer Research. 76. DOI: 10.1158/1538-7445.Am2016-Lb-168  0.39
2015 Edmonds MD, Boyd KL, Moyo T, Mitra R, Duszynski R, Arrate MP, Chen X, Zhao Z, Blackwell TS, Andl T, Eischen CM. MicroRNA-31 initiates lung tumorigenesis and promotes mutant KRAS-driven lung cancer. The Journal of Clinical Investigation. PMID 26657862 DOI: 10.1172/Jci82720  0.34
2015 Jiang W, Mitra R, Lin CC, Wang Q, Cheng F, Zhao Z. Systematic dissection of dysregulated transcription factor-miRNA feed-forward loops across tumor types. Briefings in Bioinformatics. PMID 26655252 DOI: 10.1093/Bib/Bbv107  0.43
2015 Zhao M, Kim P, Mitra R, Zhao J, Zhao Z. TSGene 2.0: an updated literature-based knowledgebase for tumor suppressor genes. Nucleic Acids Research. PMID 26590405 DOI: 10.1093/Nar/Gkv1268  0.325
2015 Lin CC, Mitra R, Cheng F, Zhao Z. A cross-cancer differential co-expression network reveals microRNA-regulated oncogenic functional modules. Molecular Biosystems. PMID 26448606 DOI: 10.1039/C5Mb00443H  0.438
2015 Lin CC, Jiang W, Mitra R, Cheng F, Yu H, Zhao Z. Regulation rewiring analysis reveals mutual regulation between STAT1 and miR-155-5p in tumor immunosurveillance in seven major cancers. Scientific Reports. 5: 12063. PMID 26156524 DOI: 10.1038/Srep12063  0.468
2015 Mitra R, Lin CC, Eischen CM, Bandyopadhyay S, Zhao Z. Concordant dysregulation of miR-5p and miR-3p arms of the same precursor microRNA may be a mechanism in inducing cell proliferation and tumorigenesis: a lung cancer study. Rna (New York, N.Y.). 21: 1055-65. PMID 25852169 DOI: 10.1261/Rna.048132.114  0.407
2015 Mitra R, Sun J, Zhao Z. microRNA regulation in cancer: One arm or two arms? International Journal of Cancer. Journal International Du Cancer. 137: 1516-8. PMID 25758934 DOI: 10.1002/Ijc.29512  0.417
2015 Bandyopadhyay S, Ghosh D, Mitra R, Zhao Z. MBSTAR: multiple instance learning for predicting specific functional binding sites in microRNA targets. Scientific Reports. 5: 8004. PMID 25614300 DOI: 10.1038/Srep08004  0.362
2014 Mitra R, Zhao Z. The oncogenic and prognostic potential of eight microRNAs identified by a synergetic regulatory network approach in lung cancer. International Journal of Computational Biology and Drug Design. 7: 384-93. PMID 25539849 DOI: 10.1504/Ijcbdd.2014.066572  0.452
2014 Lin CC, Mitra R, Zhao Z. A tri-component conservation strategy reveals highly confident microRNA-mRNA interactions and evolution of microRNA regulatory networks. Plos One. 9: e103142. PMID 25054916 DOI: 10.1371/Journal.Pone.0103142  0.431
2014 Mitra R, Edmonds MD, Sun J, Zhao M, Yu H, Eischen CM, Zhao Z. Reproducible combinatorial regulatory networks elucidate novel oncogenic microRNAs in non-small cell lung cancer. Rna (New York, N.Y.). 20: 1356-68. PMID 25024357 DOI: 10.1261/Rna.042754.113  0.464
2013 Mitra R, Sun J, Zhao M, Zhao Z. Identifying transcription factor and microRNA mediated synergetic regulatory networks in lung cancer Bmc Bioinformatics. 14: 1-1. DOI: 10.1186/1471-2105-14-S17-A14  0.418
2011 Mitra R, Bandyopadhyay S. MultiMiTar: a novel multi objective optimization based miRNA-target prediction method. Plos One. 6: e24583. PMID 21949731 DOI: 10.1371/Journal.Pone.0024583  0.349
2010 Bandyopadhyay S, Mitra R, Maulik U, Zhang MQ. Development of the human cancer microRNA network. Silence. 1: 6. PMID 20226080 DOI: 10.1186/1758-907X-1-6  0.436
2010 Mitra R, Bandyopadhyay S, Maulik U, Zhang MQ. SFSSClass: an integrated approach for miRNA based tumor classification. Bmc Bioinformatics. 11: S22. PMID 20122194 DOI: 10.1186/1471-2105-11-S1-S22  0.39
2009 Bandyopadhyay S, Mitra R. TargetMiner: microRNA target prediction with systematic identification of tissue-specific negative examples. Bioinformatics (Oxford, England). 25: 2625-31. PMID 19692556 DOI: 10.1093/Bioinformatics/Btp503  0.356
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