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Leonard McMillan - Publications

Affiliations: 
University of North Carolina, Chapel Hill, Chapel Hill, NC 
Area:
Computer Science
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44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Sigmon JS, Blanchard MW, Baric RS, Bell TA, Brennan J, Brockmann GA, Burks AW, Calabrese JM, Caron KM, Cheney RE, Ciavatta D, Conlon F, Darr DB, Faber J, Franklin C, ... ... McMillan L, et al. Content and Performance of the MiniMUGA Genotyping Array, a New Tool To Improve Rigor and Reproducibility in Mouse Research. Genetics. PMID 33067325 DOI: 10.1534/genetics.120.303596  0.428
2019 Bissahoyo AC, Xie Y, Yang L, Pearsall RS, Lee D, Elliott RW, Demant P, McMillan L, Pardo-Manuel de Villena F, Angel JM, Threadgill DW. A New Polygenic Model for Non-familial Colorectal Cancer Inheritance Based on the Genetic Architecture of the Azoxymethane-Induced Mouse Model. Genetics. PMID 31879319 DOI: 10.1534/Genetics.119.302833  0.407
2019 Shorter JR, Maurizio PL, Bell TA, Shaw GD, Miller DR, Gooch TJ, Spence JS, McMillan L, Valdar W, Pardo-Manuel de Villena F. A Diallel of the Mouse Collaborative Cross Founders Reveals Strong Strain-Specific Maternal Effects on Litter Size. G3 (Bethesda, Md.). PMID 30877080 DOI: 10.1534/G3.118.200847  0.368
2019 Shorter JR, Najarian ML, Bell TA, Blanchard M, Ferris MT, Hock P, Kashfeen A, Kirchoff KE, Linnertz CL, Sigmon JS, Miller DR, McMillan L, Pardo-Manuel de Villena F. Whole Genome Sequencing and Progress Towards Full Inbreeding of the Mouse Collaborative Cross Population. G3 (Bethesda, Md.). PMID 30858237 DOI: 10.1534/G3.119.400039  0.434
2018 Wang JR, Holt J, McMillan L, Jones CD. FMLRC: Hybrid long read error correction using an FM-index. Bmc Bioinformatics. 19: 50. PMID 29426289 DOI: 10.1186/S12859-018-2051-3  0.522
2017 Srivastava A, Morgan AP, Najarian ML, Sarsani VK, Sigmon JS, Shorter JR, Kashfeen A, McMullan RC, Williams LH, Giusti-Rodríguez P, Ferris MT, Sullivan P, Hock P, Miller DR, Bell TA, ... McMillan L, et al. Genomes of the Mouse Collaborative Cross. Genetics. 206: 537-556. PMID 28592495 DOI: 10.1534/Genetics.116.198838  0.478
2016 Morgan AP, Didion JP, Doran AG, Holt JM, McMillan L, Keane TM, Pardo-Manuel de Villena F. Genome Report: Whole Genome Sequence of Two Wild-Derived Mus musculus domesticus Inbred Strains, LEWES/EiJ and ZALENDE/EiJ, with Different Diploid Numbers. G3 (Bethesda, Md.). PMID 27765810 DOI: 10.1534/G3.116.034751  0.449
2016 Morgan AP, Holt JM, McMullan RC, Bell TA, Clayshulte AM, Didion JP, Yadgary L, Thybert D, Odom DT, Flicek P, McMillan L, Pardo-Manuel de Villena F. The Evolutionary Fates of a Large Segmental Duplication in Mouse. Genetics. PMID 27371833 DOI: 10.1534/Genetics.116.191007  0.447
2016 Didion JP, Morgan AP, Yadgary L, Bell TA, McMullan RC, Ortiz de Solorzano L, Britton-Davidian J, Bult CJ, Campbell KJ, Castiglia R, Ching YH, Chunco AJ, Crowley JJ, Chesler EJ, Förster DW, ... ... McMillan L, et al. R2d2 drives selfish sweeps in the house mouse. Molecular Biology and Evolution. PMID 26882987 DOI: 10.1093/Molbev/Msw036  0.484
2015 Morgan AP, Fu CP, Kao CY, Welsh CE, Didion JP, Yadgary L, Hyacinth L, Ferris MT, Bell TA, Miller DR, Giusti-Rodriguez P, Nonneman RJ, Cook KD, Whitmire JK, Gralinski LE, ... ... McMillan L, et al. The Mouse Universal Genotyping Array: From Substrains to Subspecies. G3 (Bethesda, Md.). 6: 263-79. PMID 26684931 DOI: 10.1534/G3.115.022087  0.773
2015 Odet F, Pan W, Bell TA, Goodson SG, Stevans AM, Yun Z, Aylor DL, Kao CY, McMillan L, Pardo-Manuel de Villena F, O'Brien DA. The Founder Strains of the Collaborative Cross Express a Complex Combination of Advantageous and Deleterious Traits for Male Reproduction. G3 (Bethesda, Md.). PMID 26483008 DOI: 10.1534/G3.115.020172  0.445
2015 Gralinski LE, Ferris MT, Aylor DL, Whitmore AC, Green R, Frieman MB, Deming D, Menachery VD, Miller DR, Buus RJ, Bell TA, Churchill GA, Threadgill DW, Katze MG, McMillan L, et al. Genome Wide Identification of SARS-CoV Susceptibility Loci Using the Collaborative Cross. Plos Genetics. 11: e1005504. PMID 26452100 DOI: 10.1371/Journal.Pgen.1005504  0.481
2015 Crowley JJ, Zhabotynsky V, Sun W, Huang S, Pakatci IK, Kim Y, Wang JR, Morgan AP, Calaway JD, Aylor DL, Yun Z, Bell TA, Buus RJ, Calaway ME, Didion JP, ... ... McMillan L, et al. Corrigendum: Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance. Nature Genetics. 47: 690. PMID 26018903 DOI: 10.1038/Ng0615-690A  0.746
2015 Crowley JJ, Zhabotynsky V, Sun W, Huang S, Pakatci IK, Kim Y, Wang JR, Morgan AP, Calaway JD, Aylor DL, Yun Z, Bell TA, Buus RJ, Calaway ME, Didion JP, ... ... McMillan L, et al. Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance. Nature Genetics. 47: 353-60. PMID 25730764 DOI: 10.1038/Ng.3222  0.758
2015 Didion JP, Morgan AP, Clayshulte AM, Mcmullan RC, Yadgary L, Petkov PM, Bell TA, Gatti DM, Crowley JJ, Hua K, Aylor DL, Bai L, Calaway M, Chesler EJ, French JE, ... ... McMillan L, et al. A multi-megabase copy number gain causes maternal transmission ratio distortion on mouse chromosome 2. Plos Genetics. 11: e1004850. PMID 25679959 DOI: 10.1371/Journal.Pgen.1004850  0.493
2015 Didion JP, Morgan AP, Clayshulte AM-, Mcmullan RC, Yadgary L, Petkov PM, Bell TA, Gatti DM, Crowley JJ, Hua K, Aylor DL, Bai L, Calaway M, Chesler EJ, French JE, ... ... McMillan L, et al. A large copy number gain is present in strains with maternal TRD. Plos Genetics. DOI: 10.1371/Journal.Pgen.1004850.G002  0.314
2014 Holt J, McMillan L. Merging of multi-string BWTs with applications. Bioinformatics (Oxford, England). 30: 3524-31. PMID 25172922 DOI: 10.1093/Bioinformatics/Btu584  0.33
2014 Huang S, Holt J, Kao CY, McMillan L, Wang W. A novel multi-alignment pipeline for high-throughput sequencing data. Database : the Journal of Biological Databases and Curation. 2014. PMID 24948510 DOI: 10.1093/Database/Bau057  0.399
2014 Welsh CE, Miller DR, Manly KF, Wang J, McMillan L, Morahan G, Mott R, Iraqi FA, Threadgill DW, de Villena FP. Erratum to: Status and access to the Collaborative Cross population Mammalian Genome. 25: 192-192. DOI: 10.1007/S00335-014-9501-7  0.725
2013 Calaway JD, Lenarcic AB, Didion JP, Wang JR, Searle JB, McMillan L, Valdar W, Pardo-Manuel de Villena F. Genetic architecture of skewed X inactivation in the laboratory mouse. Plos Genetics. 9: e1003853. PMID 24098153 DOI: 10.1371/Journal.Pgen.1003853  0.604
2013 Zhang Z, Huang S, Wang J, Zhang X, Pardo Manuel de Villena F, McMillan L, Wang W. GeneScissors: a comprehensive approach to detecting and correcting spurious transcriptome inference owing to RNA-seq reads misalignment. Bioinformatics (Oxford, England). 29: i291-9. PMID 23812996 DOI: 10.1093/Bioinformatics/Btt216  0.328
2013 Ferris MT, Aylor DL, Bottomly D, Whitmore AC, Aicher LD, Bell TA, Bradel-Tretheway B, Bryan JT, Buus RJ, Gralinski LE, Haagmans BL, McMillan L, Miller DR, Rosenzweig E, Valdar W, et al. Modeling host genetic regulation of influenza pathogenesis in the collaborative cross. Plos Pathogens. 9: e1003196. PMID 23468633 DOI: 10.1371/Journal.Ppat.1003196  0.607
2012 Welsh CE, Miller DR, Manly KF, Wang J, McMillan L, Morahan G, Mott R, Iraqi FA, Threadgill DW, de Villena FP. Status and access to the Collaborative Cross population. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 23: 706-12. PMID 22847377 DOI: 10.1007/S00335-012-9410-6  0.781
2012 Wang JR, de Villena FP, McMillan L. Comparative analysis and visualization of multiple collinear genomes. Bmc Bioinformatics. 13: S13. PMID 22536897 DOI: 10.1186/1471-2105-13-S3-S13  0.565
2012 Sun W, Lee S, Zhabotynsky V, Zou F, Wright FA, Crowley JJ, Yun Z, Buus RJ, Miller DR, Wang J, McMillan L, Pardo-Manuel de Villena F, Sullivan PF. Transcriptome atlases of mouse brain reveals differential expression across brain regions and genetic backgrounds. G3 (Bethesda, Md.). 2: 203-11. PMID 22384399 DOI: 10.1534/G3.111.001602  0.561
2012 Welsh CE, McMillan L. Accelerating the inbreeding of multi-parental recombinant inbred lines generated by sibling matings. G3 (Bethesda, Md.). 2: 191-8. PMID 22384397 DOI: 10.1534/G3.111.001784  0.746
2012 Wang JR, de Villena FP, Lawson HA, Cheverud JM, Churchill GA, McMillan L. Imputation of single-nucleotide polymorphisms in inbred mice using local phylogeny. Genetics. 190: 449-58. PMID 22345612 DOI: 10.1534/Genetics.111.132381  0.628
2012 Svenson KL, Gatti DM, Valdar W, Welsh CE, Cheng R, Chesler EJ, Palmer AA, McMillan L, Churchill GA. High-resolution genetic mapping using the Mouse Diversity outbred population. Genetics. 190: 437-47. PMID 22345611 DOI: 10.1534/Genetics.111.132597  0.778
2012 Iraqi FA, Mahajne M, Salaymah Y, Sandovski H, Tayem H, Vered K, Balmer L, Hall M, Manship G, Morahan G, Pettit K, Scholten J, Tweedie K, Wallace A, Weerasekera L, ... ... McMillan L, et al. The genome architecture of the collaborative cross mouse genetic reference population Genetics. 190: 389-401. PMID 22345608 DOI: 10.1534/Genetics.111.132639  0.788
2012 Didion JP, Yang H, Sheppard K, Fu CP, McMillan L, de Villena FP, Churchill GA. Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias. Bmc Genomics. 13: 34. PMID 22260749 DOI: 10.1186/1471-2164-13-34  0.397
2011 Wang J, de Villena FP, McMillan L. Dynamic Visualization and Comparative Analysis of Multiple Collinear Genomic Data. Acm-Bcb ... ... : the ... Acm Conference On Bioinformatics, Computational Biology and Biomedicine. Acm Conference On Bioinformatics, Computational Biology and Biomedicine. 2011: 335-339. PMID 29119144 DOI: 10.1145/2147805.2147846  0.526
2011 Yang H, Wang JR, Didion JP, Buus RJ, Bell TA, Welsh CE, Bonhomme F, Yu AH, Nachman MW, Pialek J, Tucker P, Boursot P, McMillan L, Churchill GA, de Villena FP. Subspecific origin and haplotype diversity in the laboratory mouse. Nature Genetics. 43: 648-55. PMID 21623374 DOI: 10.1038/Ng.847  0.772
2011 Aylor DL, Valdar W, Foulds-Mathes W, Buus RJ, Verdugo RA, Baric RS, Ferris MT, Frelinger JA, Heise M, Frieman MB, Gralinski LE, Bell TA, Didion JD, Hua K, Nehrenberg DL, ... ... McMillan L, et al. Genetic analysis of complex traits in the emerging Collaborative Cross. Genome Research. 21: 1213-22. PMID 21406540 DOI: 10.1101/Gr.111310.110  0.665
2010 Wang J, de Villena FP, Moore KJ, Wang W, Zhang Q, McMillan L. Genome-wide compatible SNP intervals and their properties. The 2010 Acm International Conference On Bioinformatics and Computational Biology : Acm-Bcb 2010 : Niagara Falls, New York, U.S.a., August 2-4, 2010. Acm International Conference On Bioinformatics and Computational Biology (1st : 2010 :.... 2010: 43-52. PMID 29152612 DOI: 10.1145/1854776.1854788  0.55
2010 Liu EY, Zhang Q, McMillan L, de Villena FP, Wang W. Efficient genome ancestry inference in complex pedigrees with inbreeding. Bioinformatics (Oxford, England). 26: i199-207. PMID 20529906 DOI: 10.1093/Bioinformatics/Btq187  0.431
2010 Yu J, McMillan L, Sturm P. Multi-perspective modelling, rendering and imaging Computer Graphics Forum. 29: 227-246. DOI: 10.1111/j.1467-8659.2009.01587.x  0.39
2009 Pan F, McMillan L, Pardo-Manuel De Villena F, Threadgill D, Wang W. TreeQA: quantitative genome wide association mapping using local perfect phylogeny trees. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 415-26. PMID 19209719  0.318
2009 Zhang Q, Wang W, McMillan L, Pardo-Manuel De Villena F, Threadgill D. Inferring genome-wide mosaic structure. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 150-61. PMID 19209700  0.354
2009 Yu X, Yu J, McMillan L. Towards multi-perspective rasterization Visual Computer. 25: 549-557. DOI: 10.1007/S00371-009-0335-3  0.474
2008 Yu J, McMillan L, Sturm P. Multiperspective modeling, rendering, and imaging Acm Siggraph Asia 2008 Courses, Siggraph Asia'08. DOI: 10.1145/1508044.1508094  0.385
2007 Roberts A, Pardo-Manuel de Villena F, Wang W, McMillan L, Threadgill DW. The polymorphism architecture of mouse genetic resources elucidated using genome-wide resequencing data: implications for QTL discovery and systems genetics. Mammalian Genome : Official Journal of the International Mammalian Genome Society. 18: 473-81. PMID 17674098 DOI: 10.1007/S00335-007-9045-1  0.505
2007 Ding Y, Mcmillan L, Yu J. Multiperspective Modeling and Rendering Using General Linear Cameras Communications in Information and Systems. 7: 359-384. DOI: 10.4310/Cis.2007.V7.N4.A4  0.463
2006 Liu G, McMillan L. Estimation of missing markers in human motion capture Visual Computer. 22: 721-728. DOI: 10.1007/S00371-006-0080-9  0.428
2004 Yu J, McMillan L, Gortler SJ. Surface Camera (Scam) Light Field Rendering International Journal of Image and Graphics. 4: 605-625. DOI: 10.1142/S0219467804001567  0.44
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