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Alyson E. Santoro, Ph.D. - Publications

Affiliations: 
2008 Stanford University, Palo Alto, CA 
Area:
Environmental Sciences, Microbiology Biology, Oceanography Biology, Biogeochemistry
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45 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Hilderbrand RH, Keller SR, Laperriere SM, Santoro AE, Cessna J, Trott R. Microbial communities can predict the ecological condition of headwater streams. Plos One. 15: e0236932. PMID 32745120 DOI: 10.1371/Journal.Pone.0236932  0.389
2020 Aylward FO, Santoro AE. Heterotrophic Thaumarchaea with Small Genomes Are Widespread in the Dark Ocean. Msystems. 5. PMID 32546674 DOI: 10.1128/mSystems.00415-20  0.366
2020 Baker BJ, De Anda V, Seitz KW, Dombrowski N, Santoro AE, Lloyd KG. Diversity, ecology and evolution of Archaea. Nature Microbiology. PMID 32367054 DOI: 10.1038/S41564-020-0715-Z  0.411
2020 Laperriere SM, Hilderbrand RH, Keller SR, Trott R, Santoro AE. Headwater stream microbial diversity and function across agricultural and urban land use gradients. Applied and Environmental Microbiology. PMID 32245755 DOI: 10.1128/Aem.00018-20  0.378
2020 Rodríguez-Martínez R, Leonard G, Milner DS, Sudek S, Conway M, Moore K, Hudson T, Mahé F, Keeling PJ, Santoro AE, Worden AZ, Richards TA. Controlled sampling of ribosomally active protistan diversity in sediment-surface layers identifies putative players in the marine carbon sink. The Isme Journal. PMID 31919469 DOI: 10.1038/S41396-019-0581-Y  0.429
2020 Saito MA, McIlvin MR, Moran DM, Santoro AE, Dupont CL, Rafter PA, Saunders JK, Kaul D, Lamborg CH, Westley M, Valois F, Waterbury JB. Abundant nitrite-oxidizing metalloenzymes in the mesopelagic zone of the tropical Pacific Ocean Nature Geoscience. 13: 355-362. DOI: 10.1038/S41561-020-0565-6  0.369
2019 Wideman JG, Monier A, Rodríguez-Martínez R, Leonard G, Cook E, Poirier C, Maguire F, Milner DS, Irwin NAT, Moore K, Santoro AE, Keeling PJ, Worden AZ, Richards TA. Unexpected mitochondrial genome diversity revealed by targeted single-cell genomics of heterotrophic flagellated protists. Nature Microbiology. PMID 31768028 DOI: 10.1038/S41564-019-0605-4  0.337
2019 Weber L, González-Díaz P, Armenteros M, Ferrer VM, Bretos F, Bartels E, Santoro AE, Apprill A. Microbial signatures of protected and impacted Northern Caribbean reefs: changes from Cuba to the Florida Keys. Environmental Microbiology. PMID 31743949 DOI: 10.1111/1462-2920.14870  0.428
2019 Santoro AE, Kellom M, Laperriere SM. Contributions of single-cell genomics to our understanding of planktonic marine archaea. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20190096. PMID 31587640 DOI: 10.1098/Rstb.2019.0096  0.343
2019 Needham DM, Poirier C, Hehenberger E, Jiménez V, Swalwell JE, Santoro AE, Worden AZ. Targeted metagenomic recovery of four divergent viruses reveals shared and distinctive characteristics of giant viruses of marine eukaryotes. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 374: 20190086. PMID 31587639 DOI: 10.1098/Rstb.2019.0086  0.355
2019 Needham DM, Yoshizawa S, Hosaka T, Poirier C, Choi CJ, Hehenberger E, Irwin NAT, Wilken S, Yung CM, Bachy C, Kurihara R, Nakajima Y, Kojima K, Kimura-Someya T, Leonard G, ... ... Santoro AE, et al. A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators. Proceedings of the National Academy of Sciences of the United States of America. PMID 31548428 DOI: 10.1073/Pnas.1907517116  0.375
2018 Strassert JFH, Hehenberger E, Del Campo J, Okamoto N, Kolisko M, Richards TA, Worden AZ, Santoro AE, Keeling PJ. Phylogeny, Evidence for a Cryptic Plastid, and Distribution of Chytriodinium Parasites (Dinophyceae) Infecting Copepods. The Journal of Eukaryotic Microbiology. PMID 30444565 DOI: 10.1111/Jeu.12701  0.348
2018 Santoro AE, Richter RA, Dupont CL. Planktonic Marine Archaea. Annual Review of Marine Science. PMID 30212260 DOI: 10.1146/Annurev-Marine-121916-063141  0.361
2018 Okamoto N, Gawryluk RMR, Del Campo J, Strassert JFH, Lukeš J, Richards TA, Worden AZ, Santoro AE, Keeling PJ. A Revised Taxonomy of Diplonemids Including the Eupelagonemidae n. fam. and a Type Species, Eupelagonema oceanica n. gen. & sp. The Journal of Eukaryotic Microbiology. PMID 30080299 DOI: 10.1111/Jeu.12679  0.375
2018 Carini P, Dupont CL, Santoro AE. Patterns of thaumarchaeal gene expression in culture and diverse marine environments. Environmental Microbiology. PMID 29626379 DOI: 10.1111/1462-2920.14107  0.672
2018 Wilson ST, Bange HW, Arévalo-Martínez DL, Barnes J, Borges AV, Brown I, Bullister JL, Burgos M, Capelle DW, Casso M, de la Paz M, Farías L, Fenwick L, Ferrón S, Garcia G, ... ... Santoro AE, et al. An intercomparison of oceanic methane and nitrous oxide measurements Biogeosciences. 15: 5891-5907. DOI: 10.5194/Bg-15-5891-2018  0.355
2018 Laperriere SM, Nidzieko NJ, Fox RJ, Fisher AW, Santoro AE. Observations of Variable Ammonia Oxidation and Nitrous Oxide Flux in a Eutrophic Estuary Estuaries and Coasts. 42: 33-44. DOI: 10.1007/S12237-018-0441-4  0.352
2017 Orsi WD, Wilken S, Del Campo J, Heger T, James E, Richards TA, Keeling PJ, Worden AZ, Santoro AE. Identifying protist consumers of photosynthetic picoeukaryotes in the surface ocean using stable isotope probing. Environmental Microbiology. PMID 29215213 DOI: 10.1111/1462-2920.14018  0.413
2017 Strassert JFH, Karnkowska A, Hehenberger E, Del Campo J, Kolisko M, Okamoto N, Burki F, Janouškovec J, Poirier C, Leonard G, Hallam SJ, Richards TA, Worden AZ, Santoro AE, Keeling PJ. Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates. The Isme Journal. PMID 28994824 DOI: 10.1038/Ismej.2017.167  0.412
2017 Monier A, Chambouvet A, Milner DS, Attah V, Terrado R, Lovejoy C, Moreau H, Santoro AE, Derelle É, Richards TA. Host-derived viral transporter protein for nitrogen uptake in infected marine phytoplankton. Proceedings of the National Academy of Sciences of the United States of America. PMID 28827361 DOI: 10.1073/Pnas.1708097114  0.364
2017 Santoro AE, Saito MA, Goepfert TJ, Lamborg CH, Dupont CL, DiTullio GR. Thaumarchaeal ecotype distributions across the equatorial Pacific Ocean and their potential roles in nitrification and sinking flux attenuation Limnology and Oceanography. 62: 1984-2003. DOI: 10.1002/Lno.10547  0.455
2016 Gawryluk RM, Del Campo J, Okamoto N, Strassert JF, Lukeš J, Richards TA, Worden AZ, Santoro AE, Keeling PJ. Morphological Identification and Single-Cell Genomics of Marine Diplonemids. Current Biology : Cb. 26: 3053-3059. PMID 27875688 DOI: 10.1016/J.Cub.2016.09.013  0.443
2016 Hurley SJ, Elling FJ, Könneke M, Buchwald C, Wankel SD, Santoro AE, Lipp JS, Hinrichs KU, Pearson A. Influence of ammonia oxidation rate on thaumarchaeal lipid composition and the TEX86 temperature proxy. Proceedings of the National Academy of Sciences of the United States of America. PMID 27357675 DOI: 10.1073/Pnas.1518534113  0.367
2016 Orsi WD, Smith JM, Liu S, Liu Z, Sakamoto CM, Wilken S, Poirier C, Richards TA, Keeling PJ, Worden AZ, Santoro AE. Diverse, uncultivated bacteria and archaea underlying the cycling of dissolved protein in the ocean. The Isme Journal. PMID 26953597 DOI: 10.1038/Ismej.2016.20  0.43
2016 Santoro AE. MICROBIOLOGY. The do-it-all nitrifier Science (New York, N.Y.). 351: 342-343. PMID 26798002 DOI: 10.1126/Science.Aad9839  0.355
2016 McNally SP, Parsons RJ, Santoro AE, Apprill A. Multifaceted impacts of the stony coralPorites astreoideson picoplankton abundance and community composition Limnology and Oceanography. 62: 217-234. DOI: 10.1002/Lno.10389  0.42
2015 Orsi WD, Smith JM, Wilcox HM, Swalwell JE, Carini P, Worden AZ, Santoro AE. Ecophysiology of uncultivated marine euryarchaea is linked to particulate organic matter. The Isme Journal. PMID 25615436 DOI: 10.1038/Ismej.2014.260  0.658
2015 Santoro AE, Dupont CL, Richter RA, Craig MT, Carini P, McIlvin MR, Yang Y, Orsi WD, Moran DM, Saito MA. Genomic and proteomic characterization of "Candidatus Nitrosopelagicus brevis": an ammonia-oxidizing archaeon from the open ocean. Proceedings of the National Academy of Sciences of the United States of America. 112: 1173-8. PMID 25587132 DOI: 10.1073/Pnas.1416223112  0.672
2015 Letscher RT, Knapp AN, James AK, Carlson CA, Santoro AE, Hansell DA. Microbial community composition and nitrogen availability influence DOC remineralization in the South Pacific Gyre Marine Chemistry. DOI: 10.1016/J.Marchem.2015.06.024  0.4
2015 Buchwald C, Santoro AE, Stanley RHR, Casciotti KL. Nitrogen cycling in the secondary nitrite maximum of the eastern tropical North Pacific off Costa Rica Global Biogeochemical Cycles. 29: 2061-2081. DOI: 10.1002/2015Gb005187  0.37
2014 Orsi WD, Richards TA, Santoro AE. Cellular maintenance processes that potentially underpin the survival of subseafloor fungi over geological timescales Estuarine, Coastal and Shelf Science. DOI: 10.1016/J.Ecss.2015.04.009  0.404
2013 Santoro AE, Sakamoto CM, Smith JM, Plant JN, Gehman AL, Worden AZ, Johnson KS, Francis CA, Casciotti KL. Measurements of nitrite production and nitrite-producing organisms in and around the primary nitrite maximum in the central California Current Biogeosciences Discussions. 10: 5803-5840. DOI: 10.5194/Bgd-10-5803-2013  0.387
2013 Santoro AE, Sakamoto CM, Smith JM, Plant JN, Gehman AL, Worden AZ, Johnson KS, Francis CA, Casciotti KL. Measurements of nitrite production in and around the primary nitrite maximum in the central California Current Biogeosciences. 10: 7395-7410. DOI: 10.5194/Bg-10-7395-2013  0.366
2012 Wong SHC, Santoro AE, Nidzieko NJ, Hench JL, Boehm AB. Coupled physical, chemical, and microbiological measurements suggest a connection between internal waves and surf zone water quality in the Southern California Bight Continental Shelf Research. 34: 64-78. DOI: 10.1016/J.Csr.2011.12.005  0.538
2011 Santoro AE, Casciotti KL. Enrichment and characterization of ammonia-oxidizing archaea from the open ocean: phylogeny, physiology and stable isotope fractionation. The Isme Journal. 5: 1796-808. PMID 21562601 DOI: 10.1038/Ismej.2011.58  0.414
2011 Casciotti KL, Buchwald C, Santoro AE, Frame C. Assessment of nitrogen and oxygen isotopic fractionation during nitrification and its expression in the marine environment. Methods in Enzymology. 486: 253-80. PMID 21185439 DOI: 10.1016/B978-0-12-381294-0.00011-0  0.363
2010 Santoro AE, Casciotti KL, Francis CA. Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current. Environmental Microbiology. 12: 1989-2006. PMID 20345944 DOI: 10.1111/J.1462-2920.2010.02205.X  0.428
2010 Monismith SG, Davis KA, Shellenbarger GG, Hench JL, Nidzieko NJ, Santoro AE, Reidenbach MA, Rosman JH, Holtzman R, Martens CS, Lindquist NL, Southwell MW, Genin A. Flow effects on benthic grazing on phytoplankton by a Caribbean reef Limnology and Oceanography. 55: 1881-1892. DOI: 10.4319/Lo.2010.55.5.1881  0.336
2010 Santoro AE, Nidzieko NJ, Van Dijken GL, Arrigo KR, Boehm AB. Contrasting spring and summer phytoplankton dynamics in the nearshore Southern California Bight Limnology and Oceanography. 55: 264-278. DOI: 10.4319/Lo.2010.55.1.0264  0.353
2010 Santoro AE. Microbial nitrogen cycling at the saltwater-freshwater interface Hydrogeology Journal. 18: 187-202. DOI: 10.1007/S10040-009-0526-Z  0.385
2008 Santoro AE, Francis CA, de Sieyes NR, Boehm AB. Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary. Environmental Microbiology. 10: 1068-79. PMID 18266758 DOI: 10.1111/J.1462-2920.2007.01547.X  0.577
2007 Yamahara KM, Layton BA, Santoro AE, Boehm AB. Beach sands along the California coast are diffuse sources of fecal bacteria to coastal waters. Environmental Science & Technology. 41: 4515-21. PMID 17695890 DOI: 10.1021/Es062822N  0.682
2007 Santoro AE, Boehm AB. Frequent occurrence of the human-specific Bacteroides fecal marker at an open coast marine beach: relationship to waves, tides and traditional indicators. Environmental Microbiology. 9: 2038-49. PMID 17635548 DOI: 10.1111/J.1462-2920.2007.01319.X  0.545
2006 Santoro AE, Boehm AB, Francis CA. Denitrifier community composition along a nitrate and salinity gradient in a coastal aquifer. Applied and Environmental Microbiology. 72: 2102-9. PMID 16517659 DOI: 10.1128/Aem.72.3.2102-2109.2006  0.554
2005 Francis CA, Roberts KJ, Beman JM, Santoro AE, Oakley BB. Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proceedings of the National Academy of Sciences of the United States of America. 102: 14683-8. PMID 16186488 DOI: 10.1073/Pnas.0506625102  0.474
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