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David L. Bernick, Ph.D. - Publications

Affiliations: 
2010 Biomolecular Engineering University of California, Santa Cruz, Santa Cruz, CA, United States 
Area:
Molecular Biology, Virology Biology, Bioinformatics Biology
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11/20 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Lui LM, Uzilov AV, Bernick DL, Corredor A, Lowe TM, Dennis PP. Methylation guide RNA evolution in archaea: structure, function and genomic organization of 110 C/D box sRNA families across six Pyrobaculum species. Nucleic Acids Research. PMID 29771354 DOI: 10.1093/Nar/Gky284  0.741
2017 Draper JL, Hansen LM, Bernick DL, Abedrabbo S, Underwood JG, Kong N, Huang BC, Weis AM, Weimer BC, van Vliet AH, Pourmand N, Solnick JV, Karplus K, Ottemann KM. Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains. Mbio. 8. PMID 28223462 DOI: 10.1128/Mbio.02321-16  0.478
2015 Smith AM, Abu-Shumays R, Akeson M, Bernick DL. Capture, Unfolding, and Detection of Individual tRNA Molecules Using a Nanopore Device. Frontiers in Bioengineering and Biotechnology. 3: 91. PMID 26157798 DOI: 10.3389/Fbioe.2015.00091  0.479
2014 Miller HK, Kwuan L, Schwiesow L, Bernick DL, Mettert E, Ramirez HA, Ragle JM, Chan PP, Kiley PJ, Lowe TM, Auerbuch V. IscR is essential for yersinia pseudotuberculosis type III secretion and virulence. Plos Pathogens. 10: e1004194. PMID 24945271 DOI: 10.1371/Journal.Ppat.1004194  0.58
2012 Bernick DL, Karplus K, Lui LM, Coker JK, Murphy JN, Chan PP, Cozen AE, Lowe TM. Complete genome sequence of Pyrobaculum oguniense. Standards in Genomic Sciences. 6: 336-45. PMID 23407329 DOI: 10.4056/Sigs.2645906  0.714
2012 Bernick DL, Cox CL, Dennis PP, Lowe TM. Comparative genomic and transcriptional analyses of CRISPR systems across the genus Pyrobaculum. Frontiers in Microbiology. 3: 251. PMID 22811677 DOI: 10.3389/Fmicb.2012.00251  0.705
2012 Bernick DL, Dennis PP, Lui LM, Lowe TM. Diversity of Antisense and Other Non-Coding RNAs in Archaea Revealed by Comparative Small RNA Sequencing in Four Pyrobaculum Species. Frontiers in Microbiology. 3: 231. PMID 22783241 DOI: 10.3389/Fmicb.2012.00231  0.738
2012 Zargar K, Conrad A, Bernick DL, Lowe TM, Stolc V, Hoeft S, Oremland RS, Stolz J, Saltikov CW. ArxA, a new clade of arsenite oxidase within the DMSO reductase family of molybdenum oxidoreductases. Environmental Microbiology. 14: 1635-45. PMID 22404962 DOI: 10.1111/J.1462-2920.2012.02722.X  0.607
2012 Bernick DL, Dennis PP, Höchsmann M, Lowe TM. Discovery of Pyrobaculum small RNA families with atypical pseudouridine guide RNA features. Rna (New York, N.Y.). 18: 402-11. PMID 22282340 DOI: 10.1261/Rna.031385.111  0.725
2010 Lai LB, Chan PP, Cozen AE, Bernick DL, Brown JW, Gopalan V, Lowe TM. Discovery of a minimal form of RNase P in Pyrobaculum. Proceedings of the National Academy of Sciences of the United States of America. 107: 22493-8. PMID 21135215 DOI: 10.1073/Pnas.1013969107  0.695
2009 Cozen AE, Weirauch MT, Pollard KS, Bernick DL, Stuart JM, Lowe TM. Transcriptional map of respiratory versatility in the hyperthermophilic crenarchaeon Pyrobaculum aerophilum Journal of Bacteriology. 191: 782-794. PMID 19047344 DOI: 10.1128/Jb.00965-08  0.675
Low-probability matches (unlikely to be authored by this person)
2023 Mendelsohn S, Froelicher D, Loginov D, Bernick D, Berger B, Cho H. sfkit: a web-based toolkit for secure and federated genomic analysis. Nucleic Acids Research. 51: W535-W541. PMID 37246709 DOI: 10.1093/nar/gkad464  0.279
2021 Rehm HL, Page AJH, Smith L, Adams JB, Alterovitz G, Babb LJ, Barkley MP, Baudis M, Beauvais MJS, Beck T, Beckmann JS, Beltran S, Bernick D, Bernier A, Bonfield JK, et al. GA4GH: International policies and standards for data sharing across genomic research and healthcare. Cell Genomics. 1. PMID 35072136 DOI: 10.1016/j.xgen.2021.100029  0.276
2023 Hu S, Giacopazzi S, Modlin R, Karplus K, Bernick DL, Ottemann KM. Altering under-represented DNA sequences elevates bacterial transformation efficiency. Mbio. e0210523. PMID 37905805 DOI: 10.1128/mbio.02105-23  0.254
1981 Hoehler FK, McCann MA, Bernick DL. Habituation of the Hoffmann reflex Brain Research. 220: 299-307. PMID 7284757 DOI: 10.1016/0006-8993(81)91219-1  0.067
2021 Hicks M, Tran-Dao TK, Mulroney L, Bernick DL. Assembly of Using Ultra-Long Reads. Frontiers in Microbiology. 12: 657995. PMID 33936015 DOI: 10.3389/fmicb.2021.657995  0.066
2023 Mayo KR, Basford MA, Carroll RJ, Dillon M, Fullen H, Leung J, Master H, Rura S, Sulieman L, Kennedy N, Banks E, Bernick D, Gauchan A, Lichtenstein L, Mapes BM, et al. The Data and Research Center: Creating a Secure, Scalable, and Sustainable Ecosystem for Biomedical Research. Annual Review of Biomedical Data Science. 6: 443-464. PMID 37561600 DOI: 10.1146/annurev-biodatasci-122120-104825  0.043
2021 Voisin C, Linden M, Dyke SOM, Bowers SR, Alper P, Barkley MP, Bernick D, Chao J, Courtot M, Jeanson F, Konopko MA, Kuba M, Lawson J, Leinonen J, Li S, et al. GA4GH Passport standard for digital identity and access permissions. Cell Genomics. 1: None. PMID 34820660 DOI: 10.1016/j.xgen.2021.100030  0.032
1979 Bernick DL, Buerger AA. High speed analogue-digital conversion and addressable trigger generation on the IEEE 488-1975 interface bus Medical &Amp; Biological Engineering &Amp; Computing. 17: 688-692. PMID 316086 DOI: 10.1007/BF02440918  0.018
1980 Bernick DL, Hoehler FK. Negative feedback-controlled electromechanical transducer for oscillation and stretch of muscle Medical &Amp; Biological Engineering &Amp; Computing. 18: 794-796. PMID 7230930 DOI: 10.1007/BF02441909  0.01
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