| Year |
Citation |
Score |
| 2023 |
Heil LR, Damoc E, Arrey TN, Pashkova A, Denisov E, Petzoldt J, Peterson AC, Hsu C, Searle BC, Shulman N, Riffle M, Connolly B, MacLean BX, Remes PM, Senko MW, ... ... Wu CC, et al. Evaluating the Performance of the Astral Mass Analyzer for Quantitative Proteomics Using Data-Independent Acquisition. Journal of Proteome Research. PMID 37683181 DOI: 10.1021/acs.jproteome.3c00357 |
0.306 |
|
| 2023 |
Heil LR, Damoc E, Arrey TN, Pashkova A, Denisov E, Petzoldt J, Peterson A, Hsu C, Searle BC, Shulman N, Riffle M, Connolly B, MacLean BX, Remes PM, Senko M, ... ... Wu CC, et al. Evaluating the performance of the Astral mass analyzer for quantitative proteomics using data independent acquisition. Biorxiv : the Preprint Server For Biology. PMID 37398334 DOI: 10.1101/2023.06.03.543570 |
0.306 |
|
| 2022 |
Plubell DL, Käll L, Webb-Robertson BJ, Bramer LM, Ives A, Kelleher NL, Smith LM, Montine TJ, Wu CC, MacCoss MJ. Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics? Journal of Proteome Research. PMID 35220718 DOI: 10.1021/acs.jproteome.1c00894 |
0.344 |
|
| 2017 |
Goulding SP, Szumlinski KK, Contet C, MacCoss MJ, Wu CC. A mass spectrometry-based proteomic analysis of Homer2-interacting proteins in the mouse brain. Journal of Proteomics. PMID 28728878 DOI: 10.1016/J.Jprot.2017.07.008 |
0.383 |
|
| 2016 |
Ernst WL, Shome K, Wu CC, Gong X, Frizzell RA, Aridor M. VAP (VAMP-Associated Proteins) as Receptors that couple Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) Proteostasis with Lipid Homeostasis. The Journal of Biological Chemistry. PMID 26740627 DOI: 10.1074/Jbc.M115.692749 |
0.312 |
|
| 2014 |
Bateman NW, Goulding SP, Shulman NJ, Gadok AK, Szumlinski KK, MacCoss MJ, Wu CC. Maximizing peptide identification events in proteomic workflows using data-dependent acquisition (DDA) Molecular and Cellular Proteomics. 13: 329-338. PMID 23820513 DOI: 10.1074/Mcp.M112.026500 |
0.459 |
|
| 2013 |
Egertson JD, Kuehn A, Merrihew GE, Bateman NW, MacLean BX, Ting YS, Canterbury JD, Marsh DM, Kellmann M, Zabrouskov V, Wu CC, MacCoss MJ. Multiplexed MS/MS for improved data-independent acquisition Nature Methods. 10: 744-746. PMID 23793237 DOI: 10.1038/Nmeth.2528 |
0.373 |
|
| 2013 |
Goulding SP, MacCoss MJ, Wu CC. Label-free differential analysis of murine postsynaptic densities Methods in Molecular Biology. 1002: 295-309. PMID 23625411 DOI: 10.1007/978-1-62703-360-2_22 |
0.408 |
|
| 2013 |
Rogstad SM, Sorkina T, Sorkin A, Wu CC. Improved precision of proteomic measurements in immunoprecipitation based purifications using relative quantitation. Analytical Chemistry. 85: 4301-6. PMID 23517085 DOI: 10.1021/Ac4002222 |
0.767 |
|
| 2013 |
Grover H, Wallstrom G, Wu CC, Gopalakrishnan V. Context-sensitive markov models for peptide scoring and identification from tandem mass spectrometry. Omics : a Journal of Integrative Biology. 17: 94-105. PMID 23289783 DOI: 10.1089/Omi.2012.0073 |
0.445 |
|
| 2012 |
Moore SM, Wu CC. Proteomic characterization of integral membrane proteins using thermostatted liquid chromatography coupled with tandem mass spectrometry. Methods in Molecular Biology (Clifton, N.J.). 914: 155-64. PMID 22976027 DOI: 10.1007/978-1-62703-023-6_9 |
0.535 |
|
| 2012 |
Schilling B, Rardin MJ, MacLean BX, Zawadzka AM, Frewen BE, Cusack MP, Sorensen DJ, Bereman MS, Jing E, Wu CC, Verdin E, Kahn CR, Maccoss MJ, Gibson BW. Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation. Molecular & Cellular Proteomics : McP. 11: 202-14. PMID 22454539 DOI: 10.1074/Mcp.M112.017707 |
0.4 |
|
| 2011 |
Willenborg C, Jing J, Wu C, Matern H, Schaack J, Burden J, Prekeris R. Interaction between FIP5 and SNX18 regulates epithelial lumen formation. The Journal of Cell Biology. 195: 71-86. PMID 21969467 DOI: 10.1083/Jcb.201011112 |
0.358 |
|
| 2011 |
Dean MD, Findlay GD, Hoopmann MR, Wu CC, MacCoss MJ, Swanson WJ, Nachman MW. Identification of ejaculated proteins in the house mouse (Mus domesticus) via isotopic labeling. Bmc Genomics. 12: 306. PMID 21663664 DOI: 10.1186/1471-2164-12-306 |
0.349 |
|
| 2011 |
Savas JN, Stein BD, Wu CC, Yates JR. Mass spectrometry accelerates membrane protein analysis. Trends in Biochemical Sciences. 36: 388-96. PMID 21616670 DOI: 10.1016/J.Tibs.2011.04.005 |
0.463 |
|
| 2010 |
Farias SE, Kline KG, Klepacki J, Wu CC. Quantitative improvements in peptide recovery at elevated chromatographic temperatures from microcapillary liquid chromatography-mass spectrometry analyses of brain using selected reaction monitoring. Analytical Chemistry. 82: 3435-40. PMID 20373813 DOI: 10.1021/Ac100359P |
0.763 |
|
| 2010 |
Hodges BD, Wu CC. Proteomic insights into an expanded cellular role for cytoplasmic lipid droplets. Journal of Lipid Research. 51: 262-73. PMID 19965608 DOI: 10.1194/Jlr.R003582 |
0.388 |
|
| 2009 |
Kline KG, Finney GL, Wu CC. Quantitative strategies to fuel the merger of discovery and hypothesis-driven shotgun proteomics. Briefings in Functional Genomics & Proteomics. 8: 114-25. PMID 19398505 DOI: 10.1093/Bfgp/Elp008 |
0.762 |
|
| 2009 |
Kline KG, Wu CC. MudPIT analysis: application to human heart tissue. Methods in Molecular Biology (Clifton, N.J.). 528: 281-93. PMID 19153700 DOI: 10.1007/978-1-60327-310-7_20 |
0.775 |
|
| 2008 |
Kline KG, Frewen B, Bristow MR, Maccoss MJ, Wu CC. High quality catalog of proteotypic peptides from human heart. Journal of Proteome Research. 7: 5055-61. PMID 18803417 DOI: 10.1021/Pr800239E |
0.773 |
|
| 2008 |
Blackler AR, Speers AE, Wu CC. Chromatographic benefits of elevated temperature for the proteomic analysis of membrane proteins. Proteomics. 8: 3956-64. PMID 18780350 DOI: 10.1002/Pmic.200800210 |
0.778 |
|
| 2008 |
Blackler AR, Speers AE, Ladinsky MS, Wu CC. A shotgun proteomic method for the identification of membrane-embedded proteins and peptides. Journal of Proteome Research. 7: 3028-34. PMID 18537282 DOI: 10.1021/Pr700795F |
0.758 |
|
| 2008 |
Duran JM, Kinseth M, Bossard C, Rose DW, Polishchuk R, Wu CC, Yates J, Zimmerman T, Malhotra V. The role of GRASP55 in Golgi fragmentation and entry of cells into mitosis. Molecular Biology of the Cell. 19: 2579-87. PMID 18385516 DOI: 10.1091/Mbc.E07-10-0998 |
0.343 |
|
| 2008 |
Blackler AR, Wu CC. Proteomic characterization of membrane protein topology. Methods in Molecular Biology (Clifton, N.J.). 432: 185-97. PMID 18370019 DOI: 10.1007/978-1-59745-028-7_13 |
0.777 |
|
| 2008 |
Lowenthal MS, Howell KE, Wu CC. Proteomic analysis of the stacked Golgi complex. Methods in Molecular Biology (Clifton, N.J.). 432: 37-49. PMID 18370009 DOI: 10.1007/978-1-59745-028-7_3 |
0.399 |
|
| 2008 |
Finney GL, Blackler AR, Hoopmann MR, Canterbury JD, Wu CC, MacCoss MJ. Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution μLC-MS data Analytical Chemistry. 80: 961-971. PMID 18189369 DOI: 10.1021/Ac701649E |
0.757 |
|
| 2008 |
Speers AE, Wu CC. Chapter 10 Bottom-Up Mass Spectrometry Analysis of Integral Membrane Protein Structure and Topology Comprehensive Analytical Chemistry. 52: 213-243. DOI: 10.1016/S0166-526X(08)00210-9 |
0.452 |
|
| 2007 |
Hilder TL, Malone MH, Bencharit S, Colicelli J, Haystead TA, Johnson GL, Wu CC. Proteomic identification of the cerebral cavernous malformation signaling complex. Journal of Proteome Research. 6: 4343-55. PMID 17900104 DOI: 10.1021/Pr0704276 |
0.384 |
|
| 2007 |
Speers AE, Wu CC. Proteomics of integral membrane proteins--theory and application. Chemical Reviews. 107: 3687-714. PMID 17683161 DOI: 10.1021/Cr068286Z |
0.403 |
|
| 2007 |
Speers AE, Blackler AR, Wu CC. Shotgun analysis of integral membrane proteins facilitated by elevated temperature. Analytical Chemistry. 79: 4613-20. PMID 17500534 DOI: 10.1021/Ac0700225 |
0.787 |
|
| 2007 |
McClatchy DB, Dong MQ, Wu CC, Venable JD, Yates JR. 15N metabolic labeling of mammalian tissue with slow protein turnover. Journal of Proteome Research. 6: 2005-10. PMID 17375949 DOI: 10.1021/Pr060599N |
0.308 |
|
| 2007 |
Grant KJ, Wu CC. Advances in neuromembrane proteomics: efforts towards a comprehensive analysis of membrane proteins in the brain. Briefings in Functional Genomics & Proteomics. 6: 59-69. PMID 17353200 DOI: 10.1093/bfgp/elm001 |
0.313 |
|
| 2006 |
Frewen BE, Merrihew GE, Wu CC, Noble WS, MacCoss MJ. Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries. Analytical Chemistry. 78: 5678-84. PMID 16906711 DOI: 10.1021/Ac060279N |
0.436 |
|
| 2006 |
Blackler AR, Klammer AA, MacCoss MJ, Wu CC. Quantitative comparison of proteomic data quality between a 2D and 3D quadrupole ion trap. Analytical Chemistry. 78: 1337-44. PMID 16478131 DOI: 10.1021/Ac051486A |
0.732 |
|
| 2005 |
Klammer AA, Wu CC, MacCoss MJ, Noble WS. Peptide charge state determination for low-resolution tandem mass spectra. Proceedings / Ieee Computational Systems Bioinformatics Conference, Csb. Ieee Computational Systems Bioinformatics Conference. 175-85. PMID 16447975 DOI: 10.1109/CSB.2005.44 |
0.313 |
|
| 2005 |
MacCoss MJ, Wu CC, Matthews DE, Yates JR. Measurement of the isotope enrichment of stable isotope-labeled proteins using high-resolution mass spectra of peptides Analytical Chemistry. 77: 7646-7653. PMID 16316172 DOI: 10.1021/Ac0508393 |
0.386 |
|
| 2004 |
Wu CC, MacCoss MJ, Mardones G, Finnigan C, Mogelsvang S, Yates JR, Howell KE. Organellar proteomics reveals Golgi arginine dimethylation Molecular Biology of the Cell. 15: 2907-2919. PMID 15047867 DOI: 10.1091/Mbc.E04-02-0101 |
0.336 |
|
| 2003 |
MacCoss MJ, Wu CC, Liu H, Sadygov R, Yates JR. A Correlation Algorithm for the Automated Quantitative Analysis of Shotgun Proteomics Data Analytical Chemistry. 75: 6912-6921. PMID 14670053 DOI: 10.1021/Ac034790H |
0.346 |
|
| 2003 |
Tabb DL, MacCoss MJ, Wu CC, Anderson SD, Yates JR. Similarity among tandem mass spectra from proteomic experiments: detection, significance, and utility. Analytical Chemistry. 75: 2470-7. PMID 12918992 DOI: 10.1021/Ac026424O |
0.389 |
|
| 2003 |
Wu CC, MacCoss MJ, Howell KE, Yates JR. A method for the comprehensive proteomic analysis of membrane proteins Nature Biotechnology. 21: 532-538. PMID 12692561 DOI: 10.1038/Nbt819 |
0.385 |
|
| 2003 |
Wu CC, Yates JR. The application of mass spectrometry to membrane proteomics. Nature Biotechnology. 21: 262-7. PMID 12610573 DOI: 10.1038/nbt0303-262 |
0.318 |
|
| 2002 |
MacCoss MJ, Wu CC, Yates JR. Probability-based validation of protein identifications using a modified SEQUEST algorithm. Analytical Chemistry. 74: 5593-9. PMID 12433093 DOI: 10.1021/Ac025826T |
0.402 |
|
| 2002 |
Wu CC, MacCoss MJ. Shotgun proteomics: Tools for the analysis of complex biological systems Current Opinion in Molecular Therapeutics. 4: 242-250. PMID 12139310 |
0.354 |
|
| 2001 |
Taylor RS, Wu CC, Hays LG, Eng JK, Yates JR, Howell KE. Proteomics of rat liver Golgi complex: minor proteins are identified through sequential fractionation. Electrophoresis. 21: 3441-59. PMID 11079564 DOI: 10.1002/1522-2683(20001001)21:16<3441::Aid-Elps3441>3.0.Co;2-G |
0.441 |
|
| 2000 |
Wu CC, Howell KE, Neville MC, Yates JR, McManaman JL. Proteomics reveal a link between the endoplasmic reticulum and lipid secretory mechanisms in mammary epithelial cells. Electrophoresis. 21: 3470-82. PMID 11079566 DOI: 10.1002/1522-2683(20001001)21:16<3470::Aid-Elps3470>3.0.Co;2-G |
0.361 |
|
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