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Scott A. Tenenbaum - Publications

Affiliations: 
Biomedical Sciences State University of New York, Albany, Albany, NY, United States 
Area:
Bioinformatics Biology, Systematic Biology, Computer Science
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44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Chowdhury R, Wang Y, Campbell M, Goderie SK, Doyle F, Tenenbaum SA, Kusek G, Kiehl TR, Ansari SA, Boles NC, Temple S. STAU2 binds a complex RNA cargo that changes temporally with production of diverse intermediate progenitor cells during mouse corticogenesis. Development (Cambridge, England). 148. PMID 34345913 DOI: 10.1242/dev.199376  0.362
2021 Chowdhury R, Wang Y, Campbell M, Goderie S, Doyle F, Tenenbaum SA, Kusek G, Kiehl TR, Ansari S, Boles NC, Temple S. STAU2 binds a Complex RNA Cargo that changes temporally with production of diverse intermediate progenitor cells during mouse corticogenesis. Development (Cambridge, England). PMID 34269792 DOI: 10.1242/dev.199376  0.362
2017 Huang K, Doyle F, Wurz ZE, Tenenbaum SA, Hammond RK, Caplan JL, Meyers BC. FASTmiR: an RNA-based sensor for in vitro quantification and live-cell localization of small RNAs. Nucleic Acids Research. PMID 28586459 DOI: 10.1093/Nar/Gkx504  0.469
2017 Doyle F, Lapsia S, Spadaro S, Wurz ZE, Bhaduri-McIntosh S, Tenenbaum SA. Engineering Structurally Interacting RNA (sxRNA). Scientific Reports. 7: 45393. PMID 28350000 DOI: 10.1038/Srep45393  0.546
2016 Doyle F, Leonardi A, Endres L, Tenenbaum SA, Dedon PC, Begley TJ. Gene- and Genome-Based Analysis of Significant Codon Patterns in Yeast, Rat and Mice Genomes with the CUT Codon Utilization Tool. Methods (San Diego, Calif.). PMID 27245397 DOI: 10.1016/J.Ymeth.2016.05.010  0.371
2015 Cassar PA, Carpenedo RL, Samavarchi-Tehrani P, Olsen JB, Park CJ, Chang WY, Chen Z, Choey C, Delaney S, Guo H, Guo H, Tanner RM, Perkins TJ, Tenenbaum SA, Emili A, et al. Integrative genomics positions MKRN1 as a novel ribonucleoprotein within the embryonic stem cell gene regulatory network. Embo Reports. 16: 1334-57. PMID 26265008 DOI: 10.15252/Embr.201540974  0.368
2015 Schmidt SA, Foley PL, Jeong DH, Rymarquis LA, Doyle F, Tenenbaum SA, Belasco JG, Green PJ. Identification of SMG6 cleavage sites and a preferred RNA cleavage motif by global analysis of endogenous NMD targets in human cells. Nucleic Acids Research. 43: 309-23. PMID 25429978 DOI: 10.1093/Nar/Gku1258  0.419
2014 Stephenson W, Wan G, Tenenbaum SA, Li PT. Nanomanipulation of single RNA molecules by optical tweezers. Journal of Visualized Experiments : Jove. PMID 25177917 DOI: 10.3791/51542  0.736
2014 Doyle F, Tenenbaum SA. Trans-regulation of RNA-binding protein motifs by microRNA. Frontiers in Genetics. 5: 79. PMID 24795744 DOI: 10.3389/Fgene.2014.00079  0.554
2014 Stephenson W, Keller S, Santiago R, Albrecht JE, Asare-Okai PN, Tenenbaum SA, Zuker M, Li PT. Combining temperature and force to study folding of an RNA hairpin. Physical Chemistry Chemical Physics : Pccp. 16: 906-17. PMID 24276015 DOI: 10.1039/C3Cp52042K  0.722
2014 Jayaseelan S, Doyle F, Tenenbaum SA. Profiling post-transcriptionally networked mRNA subsets using RIP-Chip and RIP-Seq. Methods (San Diego, Calif.). 67: 13-9. PMID 24257445 DOI: 10.1016/J.Ymeth.2013.11.001  0.516
2014 Stephenson W, Asare-Okai PN, Tenenbaum S, Fabris D, Li PT. Comparing RNA Kissing Interactions at Single-Molecule and Ensemble Levels Biophysical Journal. 106: 283a-284a. DOI: 10.1016/J.Bpj.2013.11.1659  0.498
2014 Stephenson WT, Keller S, Tenenbaum SA, Zuker M, Li PT. Structural Polymorphism of (Cag)N Repeat RNA Elucidated using Single Molecule Nanomanipulation Biophysical Journal. 106: 282a. DOI: 10.1016/J.Bpj.2013.11.1653  0.733
2013 Stephenson W, Asare-Okai PN, Chen AA, Keller S, Santiago R, Tenenbaum SA, Garcia AE, Fabris D, Li PT. The essential role of stacking adenines in a two-base-pair RNA kissing complex. Journal of the American Chemical Society. 135: 5602-11. PMID 23517345 DOI: 10.1021/Ja310820H  0.721
2013 Li PT, Stephenson W, Nii Asare-Okai P, Chen AA, Tenenbaum S, Garcia AE, Fabris D. The Essential Adenosine Stacking in a Two-Base-Pair Minimal Kissing Complex Biophysical Journal. 104: 411a. DOI: 10.1080/07391102.2013.786474  0.68
2013 Stephenson W, Santiago R, Keller S, Tenenbaum S, Zuker M, Li PT. 40 Probing single molecule RNA folding using temperature and force Journal of Biomolecular Structure and Dynamics. 31: 24-25. DOI: 10.1080/07391102.2013.786473  0.695
2013 Stephenson WT, Santiago R, Keller S, Tenenbaum S, Zuker M, Li PT. Combining Temperature and Force to Study Folding of Single RNA Molecules Biophysical Journal. 104: 412a. DOI: 10.1016/J.Bpj.2012.11.2296  0.694
2012 Jayaseelan S, Tenenbaum SA. Neurodevelopmental disorders: Signalling pathways of fragile X syndrome. Nature. 492: 359-60. PMID 23235826 DOI: 10.1038/Nature11764  0.391
2012 Kusek G, Campbell M, Doyle F, Tenenbaum SA, Kiebler M, Temple S. Asymmetric segregation of the double-stranded RNA binding protein Staufen2 during mammalian neural stem cell divisions promotes lineage progression. Cell Stem Cell. 11: 505-16. PMID 22902295 DOI: 10.1016/J.Stem.2012.06.006  0.414
2012 Lin Y, Li Z, Ozsolak F, Kim SW, Arango-Argoty G, Liu TT, Tenenbaum SA, Bailey T, Monaghan AP, Milos PM, John B. An in-depth map of polyadenylation sites in cancer. Nucleic Acids Research. 40: 8460-71. PMID 22753024 DOI: 10.1093/Nar/Gks637  0.395
2012 Lapidus KA, Nwokafor C, Scott D, Baroni TE, Tenenbaum SA, Hiroi N, Singer RH, Czaplinski K. Transgenic expression of ZBP1 in neurons suppresses cocaine-associated conditioning. Learning & Memory (Cold Spring Harbor, N.Y.). 19: 35-42. PMID 22240322 DOI: 10.1101/Lm.024471.111  0.359
2011 Shukla GC, Haque F, Tor Y, Wilhelmsson LM, Toulmé JJ, Isambert H, Guo P, Rossi JJ, Tenenbaum SA, Shapiro BA. A boost for the emerging field of RNA nanotechnology. Acs Nano. 5: 3405-18. PMID 21604810 DOI: 10.1021/Nn200989R  0.484
2011 Jayaseelan S, Doyle F, Currenti S, Tenenbaum SA. RIP: an mRNA localization technique. Methods in Molecular Biology (Clifton, N.J.). 714: 407-22. PMID 21431755 DOI: 10.1007/978-1-61779-005-8_25  0.477
2011 Jain R, Devine T, George AD, Chittur SV, Baroni TE, Penalva LO, Tenenbaum SA. RIP-Chip analysis: RNA-Binding Protein Immunoprecipitation-Microarray (Chip) Profiling. Methods in Molecular Biology (Clifton, N.J.). 703: 247-63. PMID 21125495 DOI: 10.1007/978-1-59745-248-9_17  0.636
2011 Tenenbaum SA, Christiansen J, Nielsen H. The post-transcriptional operon. Methods in Molecular Biology (Clifton, N.J.). 703: 237-45. PMID 21125494 DOI: 10.1007/978-1-59745-248-9_16  0.462
2011 George AD, Tenenbaum SA. Web-based tools for studying RNA structure and function. Methods in Molecular Biology (Clifton, N.J.). 703: 67-86. PMID 21125484 DOI: 10.1007/978-1-59745-248-9_6  0.68
2010 Jain R, Doyle F, George AD, Kuentzel M, Frank D, Chittur SV, Tenenbaum SA. RIP-CHIP in drug development. Methods in Molecular Biology (Clifton, N.J.). 632: 159-71. PMID 20217577 DOI: 10.1007/978-1-60761-663-4_10  0.538
2009 George AD, Tenenbaum SA. Informatic resources for identifying and annotating structural RNA motifs. Molecular Biotechnology. 41: 180-93. PMID 18979204 DOI: 10.1007/S12033-008-9114-Z  0.672
2008 Baroni TE, Chittur SV, George AD, Tenenbaum SA. Advances in RIP-chip analysis : RNA-binding protein immunoprecipitation-microarray profiling. Methods in Molecular Biology (Clifton, N.J.). 419: 93-108. PMID 18369977 DOI: 10.1007/978-1-59745-033-1_6  0.663
2008 Doyle F, Zaleski C, George AD, Stenson EK, Ricciardi A, Tenenbaum SA. Bioinformatic tools for studying post-transcriptional gene regulation : The UAlbany TUTR collection and other informatic resources. Methods in Molecular Biology (Clifton, N.J.). 419: 39-52. PMID 18369974 DOI: 10.1007/978-1-59745-033-1_3  0.645
2008 Stoecklin G, Tenenbaum SA, Mayo T, Chittur SV, George AD, Baroni TE, Blackshear PJ, Anderson P. Genome-wide analysis identifies interleukin-10 mRNA as target of tristetraprolin. The Journal of Biological Chemistry. 283: 11689-99. PMID 18256032 DOI: 10.1074/Jbc.M709657200  0.622
2008 Mazroui R, Di Marco S, Clair E, von Roretz C, Tenenbaum SA, Keene JD, Saleh M, Gallouzi IE. Caspase-mediated cleavage of HuR in the cytoplasm contributes to pp32/PHAP-I regulation of apoptosis. The Journal of Cell Biology. 180: 113-27. PMID 18180367 DOI: 10.1083/Jcb.200709030  0.41
2007 Baroni TE, Lastro MT, Ranganathan AC, Tenenbaum SA, Conklin DS, Aguirre-Ghiso JA. Ribonomic and short hairpin RNA gene silencing methods to explore functional gene programs associated with tumor growth arrest. Methods in Molecular Biology (Clifton, N.J.). 383: 227-44. PMID 18217689 DOI: 10.1007/978-1-59745-335-6_15  0.459
2006 George AD, Tenenbaum SA. MicroRNA modulation of RNA-binding protein regulatory elements. Rna Biology. 3: 57-9. PMID 17114943 DOI: 10.4161/Rna.3.2.3250  0.623
2005 Di Marco S, Mazroui R, Dallaire P, Chittur S, Tenenbaum SA, Radzioch D, Marette A, Gallouzi IE. NF-kappa B-mediated MyoD decay during muscle wasting requires nitric oxide synthase mRNA stabilization, HuR protein, and nitric oxide release. Molecular and Cellular Biology. 25: 6533-45. PMID 16024790 DOI: 10.1128/Mcb.25.15.6533-6545.2005  0.306
2004 Penalva LO, Tenenbaum SA, Keene JD. Gene expression analysis of messenger RNP complexes. Methods in Molecular Biology (Clifton, N.J.). 257: 125-34. PMID 14770002 DOI: 10.1385/1-59259-750-5:125  0.521
2003 Intine RV, Tenenbaum SA, Sakulich AL, Keene JD, Maraia RJ. Differential phosphorylation and subcellular localization of La RNPs associated with precursor tRNAs and translation-related mRNAs. Molecular Cell. 12: 1301-7. PMID 14636586 DOI: 10.1016/S1097-2765(03)00429-5  0.48
2003 Tenenbaum SA, Carson CC, Atasoy U, Keene JD. Genome-wide regulatory analysis using en masse nuclear run-ons and ribonomic profiling with autoimmune sera. Gene. 317: 79-87. PMID 14604794 DOI: 10.1016/S0378-1119(03)00661-9  0.376
2002 Keene JD, Tenenbaum SA. Eukaryotic mRNPs may represent posttranscriptional operons. Molecular Cell. 9: 1161-7. PMID 12086614 DOI: 10.1016/S1097-2765(02)00559-2  0.378
2002 Tenenbaum SA, Lager PJ, Carson CC, Keene JD. Ribonomics: identifying mRNA subsets in mRNP complexes using antibodies to RNA-binding proteins and genomic arrays. Methods (San Diego, Calif.). 26: 191-8. PMID 12054896 DOI: 10.1016/S1046-2023(02)00022-1  0.456
2002 Eystathioy T, Chan EK, Tenenbaum SA, Keene JD, Griffith K, Fritzler MJ. A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles. Molecular Biology of the Cell. 13: 1338-51. PMID 11950943 DOI: 10.1091/Mbc.01-11-0544  0.457
2001 Brown V, Jin P, Ceman S, Darnell JC, O'Donnell WT, Tenenbaum SA, Jin X, Feng Y, Wilkinson KD, Keene JD, Darnell RB, Warren ST. Microarray identification of FMRP-associated brain mRNAs and altered mRNA translational profiles in fragile X syndrome. Cell. 107: 477-87. PMID 11719188 DOI: 10.1016/S0092-8674(01)00568-2  0.386
2000 Tenenbaum SA, Carson CC, Lager PJ, Keene JD. Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays. Proceedings of the National Academy of Sciences of the United States of America. 97: 14085-90. PMID 11121017 DOI: 10.1073/Pnas.97.26.14085  0.421
1997 Scandurro AB, Rondon IJ, Wilson RB, Tenenbaum SA, Garry RF, Beckman BS. Interaction of erythropoietin RNA binding protein with erythropoietin RNA requires an association with heat shock protein 70. Kidney International. 51: 579-84. PMID 9027743 DOI: 10.1038/Ki.1997.83  0.462
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