Year |
Citation |
Score |
2022 |
Laghmach R, Di Pierro M, Potoyan D. A Liquid State Perspective on Dynamics of Chromatin Compartments. Frontiers in Molecular Biosciences. 8: 781981. PMID 35096966 DOI: 10.3389/fmolb.2021.781981 |
0.336 |
|
2018 |
Di Pierro M, Potoyan DA, Wolynes PG, Onuchic JN. Anomalous diffusion, spatial coherence, and viscoelasticity from the energy landscape of human chromosomes. Proceedings of the National Academy of Sciences of the United States of America. PMID 29987017 DOI: 10.1073/Pnas.1806297115 |
0.44 |
|
2018 |
Wang Z, Potoyan DA, Wolynes PG. Modeling the therapeutic efficacy of NFκB synthetic decoy oligodeoxynucleotides (ODNs). Bmc Systems Biology. 12: 4. PMID 29382384 DOI: 10.1186/S12918-018-0525-6 |
0.384 |
|
2018 |
Wang Z, Potoyan DA, Wolynes PG. Stochastic resonances in a distributed genetic broadcasting system: the NFκB/IκB paradigm. Journal of the Royal Society, Interface. 15. PMID 29343631 DOI: 10.1098/Rsif.2017.0809 |
0.477 |
|
2017 |
Potoyan DA, Wolynes PG. Stochastic dynamics of genetic broadcasting networks. Physical Review. E. 96: 052305. PMID 29347696 DOI: 10.1016/J.Bpj.2016.11.3080 |
0.534 |
|
2017 |
Potoyan DA, Bueno C, Zheng W, Komives EA, Wolynes PG. Resolving the NFκB Heterodimer Binding Paradox: Strain and Frustration Guide the Binding of Dimeric Transcription Factors. Journal of the American Chemical Society. PMID 29183131 DOI: 10.1021/Jacs.7B08741 |
0.533 |
|
2016 |
Wang Z, Potoyan DA, Wolynes PG. Molecular stripping, targets and decoys as modulators of oscillations in the NF-κB/IκBα/DNA genetic network. Journal of the Royal Society, Interface. 13. PMID 27683001 DOI: 10.1098/Rsif.2016.0606 |
0.464 |
|
2016 |
Potoyan DA, Zheng W, Ferreiro DU, Wolynes PG, Komives EA. PEST Control of Molecular Stripping of NFκB from DNA Transcription Sites. The Journal of Physical Chemistry. B. PMID 27098223 DOI: 10.1021/Acs.Jpcb.6B02359 |
0.488 |
|
2015 |
Potoyan DA, Zheng W, Komives EA, Wolynes PG. Molecular stripping in the NF-κB/IκB/DNA genetic regulatory network. Proceedings of the National Academy of Sciences of the United States of America. PMID 26699500 DOI: 10.1073/Pnas.1520483112 |
0.546 |
|
2015 |
Potoyan DA, Wolynes PG. Dichotomous noise models of gene switches. The Journal of Chemical Physics. 143: 195101. PMID 26590554 DOI: 10.1063/1.4935572 |
0.456 |
|
2015 |
Winogradoff D, Echeverria I, Potoyan DA, Papoian GA. The Acetylation Landscape of the H4 Histone Tail: Disentangling the Interplay between the Specific and Cumulative Effects. Journal of the American Chemical Society. 137: 6245-53. PMID 25905561 DOI: 10.1021/Jacs.5B00235 |
0.619 |
|
2015 |
Potoyan D, Wolynes P. Path Attractors and the Origins of Stochastic Bifrucation and Dephasing in Genetic Networks Biophysical Journal. 108: 464a. DOI: 10.1016/J.Bpj.2014.11.2531 |
0.486 |
|
2014 |
Potoyan DA, Wolynes PG. On the dephasing of genetic oscillators. Proceedings of the National Academy of Sciences of the United States of America. 111: 2391-6. PMID 24469814 DOI: 10.1073/Pnas.1323433111 |
0.446 |
|
2013 |
Papoian G, Potoyan D. Acetylations of Lysines of the H4 Histone Tail Lead to Functionally Important Remodeling of its Energy Landscape Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.055 |
0.516 |
|
2013 |
Potoyan DA, Savelyev A, Papoian GA. Recent successes in coarse-grained modeling of DNA Wiley Interdisciplinary Reviews: Computational Molecular Science. 3: 69-83. DOI: 10.1002/wcms.1114 |
0.554 |
|
2012 |
Potoyan DA, Papoian GA. Regulation of the H4 tail binding and folding landscapes via Lys-16 acetylation. Proceedings of the National Academy of Sciences of the United States of America. 109: 17857-62. PMID 22988066 DOI: 10.1073/pnas.1201805109 |
0.643 |
|
2012 |
Potoyan DA, Zhuravlev PI, Papoian GA. Computing free energy of a large-scale allosteric transition in adenylate kinase using all atom explicit solvent simulations. The Journal of Physical Chemistry. B. 116: 1709-15. PMID 22212071 DOI: 10.1021/jp209980b |
0.562 |
|
2011 |
Potoyan DA, Papoian GA. Energy landscape analyses of disordered histone tails reveal special organization of their conformational dynamics. Journal of the American Chemical Society. 133: 7405-15. PMID 21517079 DOI: 10.1021/ja1111964 |
0.628 |
|
2011 |
Potoyan D, Papoian G. Impact of Covalent Modifications on Binding and Conformational Propensities of Histone Tails Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.518 |
0.522 |
|
2010 |
Zhuravlev PI, Wu S, Potoyan DA, Rubinstein M, Papoian GA. Computing free energies of protein conformations from explicit solvent simulations. Methods (San Diego, Calif.). 52: 115-21. PMID 20493264 DOI: 10.1016/J.Ymeth.2010.05.003 |
0.55 |
|
2010 |
Potoyan D, Papoian G. Energy Landscape Analysis Reveals Residual Order in Histone Tail Dynamics Biophysical Journal. 98: 257a. DOI: 10.1016/J.Bpj.2009.12.1395 |
0.644 |
|
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