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Aram Davtyan, Ph.D. - Publications

Affiliations: 
2013 Chemistry University of Maryland, College Park, College Park, MD 
Area:
Physical Chemistry, Biochemistry, General Biophysics, Computer Science
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19 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Meller A, De Oliveira S, Davtyan A, Abramyan T, Bowman GR, van den Bedem H. Discovery of a cryptic pocket in the AI-predicted structure of PPM1D phosphatase explains the binding site and potency of its allosteric inhibitors. Frontiers in Molecular Biosciences. 10: 1171143. PMID 37143823 DOI: 10.3389/fmolb.2023.1171143  0.366
2023 Meller A, de Oliveira S, Davtyan A, Abramyan T, Bowman GR, van den Bedem H. Discovery of a cryptic pocket in the AI-predicted structure of PPM1D phosphatase explains the binding site and potency of its allosteric inhibitors. Biorxiv : the Preprint Server For Biology. PMID 36993233 DOI: 10.1101/2023.03.22.533829  0.366
2021 Xu Y, Knapp K, Le KN, Schafer NP, Safari MS, Davtyan A, Wolynes PG, Vekilov PG. Frustrated peptide chains at the fibril tip control the kinetics of growth of amyloid-β fibrils. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 34518234 DOI: 10.1073/pnas.2110995118  0.449
2021 Lu W, Bueno C, Schafer NP, Moller J, Jin S, Chen X, Chen M, Gu X, Davtyan A, de Pablo JJ, Wolynes PG. OpenAWSEM with Open3SPN2: A fast, flexible, and accessible framework for large-scale coarse-grained biomolecular simulations. Plos Computational Biology. 17: e1008308. PMID 33577557 DOI: 10.1371/journal.pcbi.1008308  0.548
2020 Jin S, Contessoto VG, Chen M, Schafer NP, Lu W, Chen X, Bueno C, Hajitaheri A, Sirovetz BJ, Davtyan A, Papoian GA, Tsai MY, Wolynes PG. AWSEM-Suite: a protein structure prediction server based on template-guided, coevolutionary-enhanced optimized folding landscapes. Nucleic Acids Research. PMID 32383764 DOI: 10.1093/Nar/Gkaa356  0.675
2019 Krepel D, Davtyan A, Schafer NP, Wolynes PG, Onuchic JN. Braiding topology and the energy landscape of chromosome organization proteins. Proceedings of the National Academy of Sciences of the United States of America. PMID 31888987 DOI: 10.1073/Pnas.1917750117  0.556
2019 Jarin Z, Tsai FC, Davtyan A, Pak AJ, Bassereau P, Voth GA. Unusual Organization of I-BAR Proteins on Tubular and Vesicular Membranes. Biophysical Journal. PMID 31349990 DOI: 10.1016/J.Bpj.2019.06.025  0.32
2019 Davtyan A, Kolomeisky AB. Theoretical insights into mechanisms of channel-facilitated molecular transport in the presence of stochastic gating. The Journal of Chemical Physics. 150: 124111. PMID 30927881 DOI: 10.1063/1.5086224  0.319
2018 Katkar HH, Davtyan A, Durumeric AEP, Hocky GM, Schramm AC, De La Cruz EM, Voth GA. Insights into the Cooperative Nature of ATP Hydrolysis in Actin Filaments. Biophysical Journal. PMID 30249402 DOI: 10.1016/J.Bpj.2018.08.034  0.337
2017 Davtyan A, Simunovic M, Voth GA. The mesoscopic membrane with proteins (MesM-P) model. The Journal of Chemical Physics. 147: 044101. PMID 28764362 DOI: 10.1063/1.4993514  0.373
2016 Davtyan A, Voth GA, Andersen HC. Dynamic force matching: Construction of dynamic coarse-grained models with realistic short time dynamics and accurate long time dynamics. The Journal of Chemical Physics. 145: 224107. PMID 27984910 DOI: 10.1063/1.4971430  0.313
2016 Davtyan A, Simunovic M, Voth GA. Multiscale simulations of protein-facilitated membrane remodeling. Journal of Structural Biology. PMID 27327264 DOI: 10.1016/J.Jsb.2016.06.012  0.379
2016 Davtyan A, Platkov M, Gruebele M, Papoian GA. Stochastic Resonance in Protein Folding Dynamics. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 26992148 DOI: 10.1002/Cphc.201501125  0.632
2015 Gruebele M, Dave K, Davtyan A, Papoian GA, Platkov M. Environmental fluctuations and stochastic resonance in protein folding. Chemphyschem : a European Journal of Chemical Physics and Physical Chemistry. PMID 26711088 DOI: 10.1002/Cphc.201501041  0.576
2015 Davtyan A, Dama JF, Voth GA, Andersen HC. Dynamic force matching: A method for constructing dynamical coarse-grained models with realistic time dependence. The Journal of Chemical Physics. 142: 154104. PMID 25903863 DOI: 10.1063/1.4917454  0.366
2014 Davtyan A, Dama JF, Sinitskiy AV, Voth GA. The Theory of Ultra-Coarse-Graining. 2. Numerical Implementation. Journal of Chemical Theory and Computation. 10: 5265-75. PMID 26583210 DOI: 10.1021/Ct500834T  0.361
2012 Zheng W, Schafer NP, Davtyan A, Papoian GA, Wolynes PG. Predictive energy landscapes for protein-protein association. Proceedings of the National Academy of Sciences of the United States of America. 109: 19244-9. PMID 23129648 DOI: 10.1073/Pnas.1216215109  0.671
2012 Davtyan A, Schafer NP, Zheng W, Clementi C, Wolynes PG, Papoian GA. AWSEM-MD: protein structure prediction using coarse-grained physical potentials and bioinformatically based local structure biasing. The Journal of Physical Chemistry. B. 116: 8494-503. PMID 22545654 DOI: 10.1021/Jp212541Y  0.669
2012 Davtyan A, Zheng W, Schafer N, Wolynes P, Papoian G. AWSEM-MD: Coarse-Grained Protein Structure Prediction using Physical Potentials and Bioinformatically Based Local Structure Biasing Biophysical Journal. 102: 619a. DOI: 10.1016/J.Bpj.2011.11.3373  0.692
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