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Breeanna R. Urbanowicz, Ph.D. - Publications

Affiliations: 
2008 Cornell University, Ithaca, NY, United States 
Area:
Plant Physiology, Biochemistry
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43 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Tan L, Cheng J, Zhang L, Backe J, Urbanowicz B, Heiss C, Azadi P. Pectic-AGP is a major form of Arabidopsis AGPs. Carbohydrate Polymers. 330: 121838. PMID 38368088 DOI: 10.1016/j.carbpol.2024.121838  0.348
2023 Zhang J, Wang X, Wang HT, Qiao Z, Yao T, Xie M, Urbanowicz BR, Zeng W, Jawdy SS, Gunter LE, Yang X, Czarnecki O, Regan S, Seguin A, Rottmann W, et al. Overexpression of REDUCED WALL ACETYLATION C increases xylan acetylation and biomass recalcitrance in Populus. Plant Physiology. PMID 37399189 DOI: 10.1093/plphys/kiad377  0.335
2023 Zhang L, Prabhakar PK, Bharadwaj VS, Bomble YJ, Peña MJ, Urbanowicz BR. Glycosyltransferase family 47 (GT47) proteins in plants and animals. Essays in Biochemistry. PMID 36960794 DOI: 10.1042/EBC20220152  0.52
2023 Prabhakar PK, Pereira JH, Taujale R, Shao W, Bharadwaj VS, Chapla D, Yang JY, Bomble YJ, Moremen KW, Kannan N, Hammel M, Adams PD, Scheller HV, Urbanowicz BR. Structural and biochemical insight into a modular β-1,4-galactan synthase in plants. Nature Plants. PMID 36849618 DOI: 10.1038/s41477-023-01358-4  0.324
2023 Shahin L, Zhang L, Mohnen D, Urbanowicz BR. Insights into pectin -acetylation in the plant cell wall: structure, synthesis, and modification. Cell Surface (Amsterdam, Netherlands). 9: 100099. PMID 36793376 DOI: 10.1016/j.tcsw.2023.100099  0.47
2023 Alvarez Martinez I, Ruprecht C, Senf D, Wang HT, Urbanowicz B, Pfrengle F. Chemo-enzymatic synthesis of long-chain oligosaccharides for studying xylan-modifying enzymes. Chemistry (Weinheim An Der Bergstrasse, Germany). e202203941. PMID 36791391 DOI: 10.1002/chem.202203941  0.343
2023 Curry TM, Peña MJ, Urbanowicz BR. An update on xylan structure, biosynthesis, and potential commercial applications. Cell Surface (Amsterdam, Netherlands). 9: 100101. PMID 36748082 DOI: 10.1016/j.tcsw.2023.100101  0.442
2022 Smith PJ, Curry TM, Yang JY, Barnes WJ, Ziegler SJ, Mittal A, Moremen KW, York WS, Bomble YJ, Peña MJ, Urbanowicz BR. Enzymatic Synthesis of Xylan Microparticles with Tunable Morphologies. Acs Materials Au. 2: 440-452. PMID 35856073 DOI: 10.1021/acsmaterialsau.2c00006  0.312
2022 Garrido MM, Piccinni FE, Landoni M, Peña MJ, Topalian J, Couto A, Wirth SA, Urbanowicz BR, Campos E. Insights into the xylan degradation system of Cellulomonas sp. B6: biochemical characterization of rCsXyn10A and rCsAbf62A. Applied Microbiology and Biotechnology. 106: 5035-5049. PMID 35799069 DOI: 10.1007/s00253-022-12061-3  0.301
2021 Wang HT, Bharadwaj VS, Yang JY, Curry TM, Moremen KW, Bomble YJ, Urbanowicz BR. Rational enzyme design for controlled functionalization of acetylated xylan for cell-free polymer biosynthesis. Carbohydrate Polymers. 273: 118564. PMID 34560975 DOI: 10.1016/j.carbpol.2021.118564  0.353
2021 Barnes WJ, Koj S, Black IM, Archer-Hartmann SA, Azadi P, Urbanowicz BR, Peña MJ, O'Neill MA. Protocols for isolating and characterizing polysaccharides from plant cell walls: a case study using rhamnogalacturonan-II. Biotechnology For Biofuels. 14: 142. PMID 34158109 DOI: 10.1186/s13068-021-01992-0  0.47
2021 Soto MJ, Prabhakar PK, Wang HT, Backe J, Chapla D, Bartetzko M, Black IM, Azadi P, Peña MJ, Pfrengle F, Moremen KW, Urbanowicz BR, Hahn MG. FUT4 and FUT6 Are Arabinofuranose-Specific Fucosyltransferases. Frontiers in Plant Science. 12: 589518. PMID 33633757 DOI: 10.3389/fpls.2021.589518  0.479
2020 Prabhakar PK, Wang HT, Smith PJ, Yang JY, Barnes WJ, Peña MJ, Moremen KW, Urbanowicz BR. Heterologous expression of plant glycosyltransferases for biochemistry and structural biology. Methods in Cell Biology. 160: 145-165. PMID 32896313 DOI: 10.1016/Bs.Mcb.2020.05.002  0.588
2020 Ruprecht C, Bartetzko MP, Senf D, Lakhina A, Smith PJ, Soto MJ, Oh H, Yang JY, Chapla D, Silva DV, Clausen MH, Hahn MG, Moremen KW, Urbanowicz BR, Pfrengle F. A Glycan Array-Based Assay for the Identification and Characterization of Plant Glycosyltransferases. Angewandte Chemie (International Ed. in English). PMID 32396713 DOI: 10.1002/Anie.202003105  0.549
2020 Lunin V, Wang HT, Bharadwaj V, Alahuhta PM, Pena MJ, Yang JY, Archer-Hartmann SA, Azadi P, Himmel M, Moremen KW, York WS, Bomble YJ, Urbanowicz B. Molecular mechanism of polysaccharide acetylation by the Arabidopsis xylan O-acetyltransferase XOAT1. The Plant Cell. PMID 32354790 DOI: 10.1105/Tpc.20.00028  0.475
2020 Smith PJ, O'Neill MA, Backe J, York WS, Peña MJ, Urbanowicz BR. Analytical Techniques for Determining the Role of Domain of Unknown Function 579 Proteins in the Synthesis of -Methylated Plant Polysaccharides. Slas Technology. 2472630320912692. PMID 32204644 DOI: 10.1177/2472630320912692  0.367
2020 Yang J, Bak G, Burgin T, Mayes HB, Pena MJ, Urbanowicz B, Barnes WJ, Nielsen E. Biochemical and Genetic Analysis Identify CSLD3 as a beta-1,4-glucan Synthase that Functions during Plant Cell Wall Synthesis. The Plant Cell. PMID 32169960 DOI: 10.1105/Tpc.19.00637  0.567
2019 Soto MJ, Urbanowicz BR, Hahn MG. Plant Fucosyltransferases and the Emerging Biological Importance of Fucosylated Plant Structures Critical Reviews in Plant Sciences. 38: 327-338. DOI: 10.1080/07352689.2019.1673968  0.474
2018 Muchero W, Sondreli KL, Chen JG, Urbanowicz BR, Zhang J, Singan V, Yang Y, Brueggeman RS, Franco-Coronado J, Abraham N, Yang JY, Moremen KW, Weisberg AJ, Chang JH, Lindquist E, et al. Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions in a tree. Proceedings of the National Academy of Sciences of the United States of America. PMID 30337484 DOI: 10.1073/Pnas.1804428115  0.321
2018 Amos RA, Pattathil S, Yang JY, Atmodjo MA, Urbanowicz BR, Moremen KW, Mohnen D. A two-phase model for the non-processive biosynthesis of homogalacturonan polysaccharides by the GAUT1:GAUT7 complex. The Journal of Biological Chemistry. PMID 30327429 DOI: 10.1074/Jbc.Ra118.004463  0.418
2018 Sechet J, Htwe S, Urbanowicz B, Agyeman A, Feng W, Ishikawa T, Colomes M, Satish Kumar K, Kawai-Yamada M, Dinneny JR, O'Neill MA, Mortimer JC. Suppressing Arabidopsis GGLT1 affects growth by reducing the L-galactose content and borate cross-linking of rhamnogalacturonan II. The Plant Journal : For Cell and Molecular Biology. PMID 30203879 DOI: 10.1111/Tpj.14088  0.442
2018 Jensen JK, Busse-Wicher M, Poulsen CP, Fangel JU, Smith PJ, Yang JY, Peña MJ, Dinesen MH, Martens HJ, Melkonian M, Wong GK, Moremen KW, Wilkerson CG, Scheller HV, Dupree P, ... ... Urbanowicz BR, et al. Identification of an algal xylan synthase indicates that there is functional orthology between algal and plant cell wall biosynthesis. The New Phytologist. PMID 29460505 DOI: 10.1111/Nph.15050  0.555
2018 Ruprecht C, Dallabernardina P, Smith PJ, Urbanowicz BR, Pfrengle F. Analyzing Xyloglucan Endotransglycosylases by Incorporation of Synthetic Oligosaccharides into Plant Cell Walls. Chembiochem : a European Journal of Chemical Biology. PMID 29384258 DOI: 10.1002/Cbic.201700638  0.562
2018 Abbott W, Alber O, Bayer E, Berrin J, Boraston A, Brumer H, Brzezinski R, Clarke A, Cobucci-Ponzano B, Cockburn D, Coutinho P, Czjzek M, Dassa B, Davies GJ, Eijsink V, ... ... Urbanowicz B, et al. Ten years of CAZypedia: a living encyclopedia of carbohydrate-active enzymes Glycobiology. 28: 3-8. PMID 29040563 DOI: 10.1093/Glycob/Cwx089  0.383
2017 Smith PJ, Wang HT, York WS, Peña MJ, Urbanowicz BR. Designer biomass for next-generation biorefineries: leveraging recent insights into xylan structure and biosynthesis. Biotechnology For Biofuels. 10: 286. PMID 29213325 DOI: 10.1186/S13068-017-0973-Z  0.439
2017 Dallabernardina P, Ruprecht C, Smith PJ, Hahn MG, Urbanowicz BR, Pfrengle F. Automated glycan assembly of galactosylated xyloglucan oligosaccharides and their recognition by plant cell wall glycan-directed antibodies. Organic & Biomolecular Chemistry. 15: 9996-10000. PMID 29177276 DOI: 10.1039/C7Ob02605F  0.47
2017 Urbanowicz BR, Bharadwaj VS, Alahuhta M, Peña MJ, Lunin VV, Bomble YJ, Wang S, Yang JY, Tuomivaara ST, Himmel ME, Moremen KW, York WS, Crowley MF. Structural, Mutagenic and In Silico studies of Xyloglucan Fucosylation in Arabidopsis thaliana Suggest a Water-Mediated Mechanism. The Plant Journal : For Cell and Molecular Biology. PMID 28670741 DOI: 10.1111/Tpj.13628  0.443
2017 Ndeh D, Rogowski A, Cartmell A, Luis AS, Baslé A, Gray J, Venditto I, Briggs J, Zhang X, Labourel A, Terrapon N, Buffetto F, Nepogodiev S, Xiao Y, Field RA, ... ... Urbanowicz BR, et al. Complex pectin metabolism by gut bacteria reveals novel catalytic functions. Nature. PMID 28329766 DOI: 10.1038/Nature21725  0.409
2015 Srivastava AC, Chen F, Ray T, Pattathil S, Peña MJ, Avci U, Li H, Huhman DV, Backe J, Urbanowicz B, Miller JS, Bedair M, Wyman CE, Sumner LW, York WS, et al. Loss of function of folylpolyglutamate synthetase 1 reduces lignin content and improves cell wall digestibility in Arabidopsis. Biotechnology For Biofuels. 8: 224. PMID 26697113 DOI: 10.1186/S13068-015-0403-Z  0.445
2014 Urbanowicz BR, Peña MJ, Moniz HA, Moremen KW, York WS. Two Arabidopsis proteins synthesize acetylated xylan in vitro. The Plant Journal : For Cell and Molecular Biology. 80: 197-206. PMID 25141999 DOI: 10.1111/Tpj.12643  0.572
2012 Urbanowicz BR, Peña MJ, Ratnaparkhe S, Avci U, Backe J, Steet HF, Foston M, Li H, O'Neill MA, Ragauskas AJ, Darvill AG, Wyman C, Gilbert HJ, York WS. 4-O-methylation of glucuronic acid in Arabidopsis glucuronoxylan is catalyzed by a domain of unknown function family 579 protein. Proceedings of the National Academy of Sciences of the United States of America. 109: 14253-8. PMID 22893684 DOI: 10.1073/Pnas.1208097109  0.609
2012 Bar-Peled M, Urbanowicz BR, O'Neill MA. The Synthesis and Origin of the Pectic Polysaccharide Rhamnogalacturonan II - Insights from Nucleotide Sugar Formation and Diversity. Frontiers in Plant Science. 3: 92. PMID 22639675 DOI: 10.3389/Fpls.2012.00092  0.411
2012 Peña MJ, Tuomivaara ST, Urbanowicz BR, O'Neill MA, York WS. Methods for structural characterization of the products of cellulose- and xyloglucan-hydrolyzing enzymes. Methods in Enzymology. 510: 121-39. PMID 22608724 DOI: 10.1016/B978-0-12-415931-0.00007-0  0.391
2012 Harris DM, Corbin K, Wang T, Gutierrez R, Bertolo AL, Petti C, Smilgies DM, Estevez JM, Bonetta D, Urbanowicz BR, Ehrhardt DW, Somerville CR, Rose JK, Hong M, Debolt S. Cellulose microfibril crystallinity is reduced by mutating C-terminal transmembrane region residues CESA1A903V and CESA3T942I of cellulose synthase. Proceedings of the National Academy of Sciences of the United States of America. 109: 4098-103. PMID 22375033 DOI: 10.1073/Pnas.1200352109  0.568
2012 Kulkarni AR, Peña MJ, Avci U, Mazumder K, Urbanowicz BR, Pattathil S, Yin Y, O'Neill MA, Roberts AW, Hahn MG, Xu Y, Darvill AG, York WS. The ability of land plants to synthesize glucuronoxylans predates the evolution of tracheophytes. Glycobiology. 22: 439-51. PMID 22048859 DOI: 10.1093/Glycob/Cwr117  0.638
2008 Lopez-Casado G, Urbanowicz BR, Damasceno CM, Rose JK. Plant glycosyl hydrolases and biofuels: a natural marriage. Current Opinion in Plant Biology. 11: 329-37. PMID 18396092 DOI: 10.1016/J.Pbi.2008.02.010  0.647
2008 Urbanowicz BR, Rose JKC. Sustainable biofuels: A daunting challenge for plant scientists Chimica Oggi. 26: 23-25.  0.34
2007 Urbanowicz BR, Bennett AB, Del Campillo E, Catalá C, Hayashi T, Henrissat B, Höfte H, McQueen-Mason SJ, Patterson SE, Shoseyov O, Teeri TT, Rose JK. Structural organization and a standardized nomenclature for plant endo-1,4-beta-glucanases (cellulases) of glycosyl hydrolase family 9. Plant Physiology. 144: 1693-6. PMID 17687051 DOI: 10.1104/Pp.107.102574  0.669
2007 Urbanowicz BR, Catalá C, Irwin D, Wilson DB, Ripoll DR, Rose JK. A tomato endo-beta-1,4-glucanase, SlCel9C1, represents a distinct subclass with a new family of carbohydrate binding modules (CBM49). The Journal of Biological Chemistry. 282: 12066-74. PMID 17322304 DOI: 10.1074/Jbc.M607925200  0.647
2007 McCann MC, Defernez M, Urbanowicz BR, Tewari JC, Langewisch T, Olek A, Wells B, Wilson RH, Carpita NC. Neural network analyses of infrared spectra for classifying cell wall architectures. Plant Physiology. 143: 1314-26. PMID 17220361 DOI: 10.1104/Pp.106.093054  0.371
2006 Stenvik GE, Butenko MA, Urbanowicz BR, Rose JK, Aalen RB. Overexpression of INFLORESCENCE DEFICIENT IN ABSCISSION activates cell separation in vestigial abscission zones in Arabidopsis. The Plant Cell. 18: 1467-76. PMID 16679455 DOI: 10.1105/Tpc.106.042036  0.544
2004 Urbanowicz BR, Rayon C, Carpita NC. Topology of the maize mixed linkage (1->3),(1->4)-beta-d-glucan synthase at the Golgi membrane. Plant Physiology. 134: 758-68. PMID 14730082 DOI: 10.1104/Pp.103.032011  0.329
2004 Buckeridge MS, Rayon C, Urbanowicz B, Tiné MAS, Carpita NC. Mixed Linkage (1→3),(1→4)-β-d-Glucans of Grasses Cereal Chemistry Journal. 81: 115-127. DOI: 10.1094/Cchem.2004.81.1.115  0.312
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