Paul Cotter, D.A. - Publications

Affiliations: 
2006 Idaho State University, Pocatello, ID, United States 
Area:
Animal Physiology Biology, Physiology Biology

407 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Mirkovic N, Obradovic M, O'Connor PM, Filipic B, Jovcic B, Cotter PD, Kojic M. C-protein α-antigen modulates the lantibiotic thusin resistance in Streptococcus agalactiae. Antonie Van Leeuwenhoek. PMID 34319449 DOI: 10.1007/s10482-021-01626-3  0.01
2021 Kuniyoshi TM, Mendonça CMN, Vieira VB, Robl D, de Melo Franco BDG, Todorov SD, Tomé E, O'Connor PM, Converti A, Araújo WL, Vasconcellos LPSP, Varani AM, Cotter PD, Rabelo SC, Oliveira RPS. Pediocin PA-1 production by Pediococcus pentosaceus ET34 using non-detoxified hemicellulose hydrolysate obtained from hydrothermal pretreatment of sugarcane bagasse. Bioresource Technology. 338: 125565. PMID 34315131 DOI: 10.1016/j.biortech.2021.125565  0.01
2021 van de Wouw M, Walsh CJ, Vigano GMD, Lyte JM, Boehme M, Gual-Grau A, Crispie F, Walsh AM, Clarke G, Dinan TG, Cotter PD, Cryan JF. Kefir Ameliorates Specific Microbiota-Gut-Brain Axis Impairments in a Mouse Model Relevant to Autism Spectrum Disorder. Brain, Behavior, and Immunity. PMID 34252569 DOI: 10.1016/j.bbi.2021.07.004  0.01
2021 Cotter PF. Atypical hemograms of the commercial duck. Poultry Science. 100: 101248. PMID 34225201 DOI: 10.1016/j.psj.2021.101248  0.01
2021 Walshe N, Cabrera-Rubio R, Collins R, Puggioni A, Gath V, Crispie F, Cotter PD, Brennan L, Mulcahy G, Duggan V. A Multiomic Approach to Investigate the Effects of a Weight Loss Program on the Intestinal Health of Overweight Horses. Frontiers in Veterinary Science. 8: 668120. PMID 34222398 DOI: 10.3389/fvets.2021.668120  0.01
2021 Mathur H, Field D, Upton M, Cotter PD. Editorial: Bacteriocins and Other Ribosomally Synthesised and Post-translationally Modified Peptides (RiPPs) as Alternatives to Antibiotics. Frontiers in Microbiology. 12: 695081. PMID 34168638 DOI: 10.3389/fmicb.2021.695081  0.01
2021 Boscaini S, Cabrera-Rubio R, Golubeva A, Nychyk O, Fülling C, Speakman JR, Cotter PD, Cryan JF, Nilaweera KN. Depletion of the gut microbiota differentially affects the impact of whey protein on high-fat diet-induced obesity and intestinal permeability. Physiological Reports. 9: e14867. PMID 34057306 DOI: 10.14814/phy2.14867  0.01
2021 Nychyk O, Barton W, Rudolf AM, Boscaini S, Walsh A, Bastiaanssen TFS, Giblin L, Cormican P, Chen L, Piotrowicz Y, Derous D, Fanning Á, Yin X, Grant J, Melgar S, ... ... Cotter PD, et al. Protein quality and quantity influence the effect of dietary fat on weight gain and tissue partitioning via host-microbiota changes. Cell Reports. 35: 109093. PMID 33979605 DOI: 10.1016/j.celrep.2021.109093  0.01
2021 Collins FWJ, Walsh CJ, Gomez-Sala B, Guijarro-García E, Stokes D, Jakobsdóttir KB, Kristjánsson K, Burns F, Cotter PD, Rea MC, Hill C, Ross RP. The microbiome of deep-sea fish reveals new microbial species and a sparsity of antibiotic resistance genes. Gut Microbes. 13: 1-13. PMID 33970781 DOI: 10.1080/19490976.2021.1921924  0.01
2021 Matthews C, Cotter PD, O' Mahony J. MAP, Johne's disease and the microbiome; current knowledge and future considerations. Animal Microbiome. 3: 34. PMID 33962690 DOI: 10.1186/s42523-021-00089-1  0.01
2021 Togher Z, Walsh MC, Fullam S, Cotter P, Crowley P. Now you see me, now you don't! Rapid spontaneous resolution of aqueductal obstruction. The Journal of the Royal College of Physicians of Edinburgh. 51: 65-66. PMID 33877139 DOI: 10.4997/JRCPE.2021.116  0.01
2021 Field D, Considine K, O'Connor PM, Ross RP, Hill C, Cotter PD. Bio-Engineered Nisin with Increased Anti- and Selectively Reduced Anti- Activity for Treatment of Bovine Mastitis. International Journal of Molecular Sciences. 22. PMID 33801752 DOI: 10.3390/ijms22073480  0.01
2021 Jalanka J, Lam C, Bennett A, Hartikainen A, Crispie F, Finnegan LA, Cotter PD, Spiller R. Colonic Gene Expression and Fecal Microbiota in Diarrhea-predominant Irritable Bowel Syndrome: Increased Toll-like Receptor 4 but Minimal Inflammation and no Response to Mesalazine. Journal of Neurogastroenterology and Motility. 27: 279-291. PMID 33795545 DOI: 10.5056/jnm20205  0.01
2021 Fitzpatrick AH, Rupnik A, O'Shea H, Crispie F, Keaveney S, Cotter P. High Throughput Sequencing for the Detection and Characterization of RNA Viruses. Frontiers in Microbiology. 12: 621719. PMID 33692767 DOI: 10.3389/fmicb.2021.621719  0.01
2021 Duysburgh C, Van den Abbeele P, Kamil A, Fleige L, De Chavez PJ, Chu Y, Barton W, O'Sullivan O, Cotter PD, Quilter K, Joyce SA, Murphy M, DunnGalvin G, Dinan TG, Marzorati M. In vitro-in vivo Validation of Stimulatory Effect of Oat Ingredients on Lactobacilli. Pathogens (Basel, Switzerland). 10. PMID 33669689 DOI: 10.3390/pathogens10020235  0.01
2021 Argüello H, Rodríguez-Gómez IM, Sánchez-Carvajal JM, Pallares FJ, Díaz I, Cabrera-Rubio R, Crispie F, Cotter PD, Mateu E, Martín-Valls G, Carrasco L, Gómez-Laguna J. Porcine reproductive and respiratory syndrome virus impacts on gut microbiome in a strain virulence-dependent fashion. Microbial Biotechnology. PMID 33656781 DOI: 10.1111/1751-7915.13757  0.01
2021 Linnane B, Walsh AM, Walsh CJ, Crispie F, O'Sullivan O, Cotter PD, McDermott M, Renwick J, McNally P. The Lung Microbiome in Young Children with Cystic Fibrosis: A Prospective Cohort Study. Microorganisms. 9. PMID 33652802 DOI: 10.3390/microorganisms9030492  0.01
2021 McHugh AJ, Yap M, Crispie F, Feehily C, Hill C, Cotter PD. Microbiome-based environmental monitoring of a dairy processing facility highlights the challenges associated with low microbial-load samples. Npj Science of Food. 5: 4. PMID 33589631 DOI: 10.1038/s41538-021-00087-2  0.01
2021 Yeluri Jonnala BR, McSweeney PLH, Cotter PD, Zhong S, Sheehan JJ, Kopec RE. Comparison of the carotenoid profiles of commonly consumed smear-ripened cheeses. Lebensmittel-Wissenschaft + [I.E. Und] Technologie. Food Science + Technology. Science + Technologie Alimentaire. 135. PMID 33446941 DOI: 10.1016/J.Lwt.2020.110241  0.01
2021 Marco ML, Sanders ME, Gänzle M, Arrieta MC, Cotter PD, De Vuyst L, Hill C, Holzapfel W, Lebeer S, Merenstein D, Reid G, Wolfe BE, Hutkins R. The International Scientific Association for Probiotics and Prebiotics (ISAPP) consensus statement on fermented foods. Nature Reviews. Gastroenterology & Hepatology. PMID 33398112 DOI: 10.1038/s41575-020-00390-5  0.01
2021 Rychli K, Wagner E, Guinane CM, Daly K, Hill C, Cotter PD. Generation of Nonpolar Deletion Mutants in Listeria monocytogenes Using the "SOEing" Method. Methods in Molecular Biology (Clifton, N.J.). 2220: 165-175. PMID 32975774 DOI: 10.1007/978-1-0716-0982-8_13  0.01
2020 Yeluri Jonnala BR, Feehily C, O'Connor PM, Field D, Hill C, Ross RP, McSweeney PLH, Sheehan JJ, Cotter PD. Assessing the ability of nisin A and derivatives thereof to inhibit gram-negative bacteria from the genus Thermus. Journal of Dairy Science. PMID 33358792 DOI: 10.3168/jds.2020-19350  0.01
2020 Tamang JP, Cotter PD, Endo A, Han NS, Kort R, Liu SQ, Mayo B, Westerik N, Hutkins R. Fermented foods in a global age: East meets West. Comprehensive Reviews in Food Science and Food Safety. 19: 184-217. PMID 33319517 DOI: 10.1111/1541-4337.12520  0.01
2020 Yap M, Feehily C, Walsh CJ, Fenelon M, Murphy EF, McAuliffe FM, van Sinderen D, O'Toole PW, O'Sullivan O, Cotter PD. Evaluation of methods for the reduction of contaminating host reads when performing shotgun metagenomic sequencing of the milk microbiome. Scientific Reports. 10: 21665. PMID 33303873 DOI: 10.1038/s41598-020-78773-6  0.01
2020 Sala C, Mordhorst H, Grützke J, Brinkmann A, Petersen TN, Poulsen C, Cotter PD, Crispie F, Ellis RJ, Castellani G, Amid C, Hakhverdyan M, Guyader SL, Manfreda G, Mossong J, et al. Metagenomics-Based Proficiency Test of Smoked Salmon Spiked with a Mock Community. Microorganisms. 8. PMID 33255715 DOI: 10.3390/microorganisms8121861  0.01
2020 Höper D, Grützke J, Brinkmann A, Mossong J, Matamoros S, Ellis RJ, Deneke C, Tausch SH, Cuesta I, Monzón S, Juliá M, Petersen TN, Hendriksen RS, Pamp SJ, Leijon M, ... ... Cotter PD, et al. Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset. Frontiers in Microbiology. 11: 575377. PMID 33250869 DOI: 10.3389/fmicb.2020.575377  0.01
2020 Mencía-Ares O, Cabrera-Rubio R, Cobo-Díaz JF, Álvarez-Ordóñez A, Gómez-García M, Puente H, Cotter PD, Crispie F, Carvajal A, Rubio P, Argüello H. Antimicrobial use and production system shape the fecal, environmental, and slurry resistomes of pig farms. Microbiome. 8: 164. PMID 33213522 DOI: 10.1186/s40168-020-00941-7  0.01
2020 Feehily C, Crosby D, Walsh CJ, Lawton EM, Higgins S, McAuliffe FM, Cotter PD. Shotgun sequencing of the vaginal microbiome reveals both a species and functional potential signature of preterm birth. Npj Biofilms and Microbiomes. 6: 50. PMID 33184260 DOI: 10.1038/s41522-020-00162-8  0.01
2020 Byrne DF, Geraghty AA, Yelverton CA, Murphy EF, Van Sinderen D, Cotter PD, McAuliffe FM. The impact of probiotic supplementation on metabolic health in healthy women of reproductive age: a systematic review. Food & Function. PMID 33174573 DOI: 10.1039/d0fo01727b  0.01
2020 Leech J, Cabrera-Rubio R, Walsh AM, Macori G, Walsh CJ, Barton W, Finnegan L, Crispie F, O'Sullivan O, Claesson MJ, Cotter PD. Fermented-Food Metagenomics Reveals Substrate-Associated Differences in Taxonomy and Health-Associated and Antibiotic Resistance Determinants. Msystems. 5. PMID 33172966 DOI: 10.1128/mSystems.00522-20  0.01
2020 Walshe N, Mulcahy G, Crispie F, Cabrera-Rubio R, Cotter P, Jahns H, Duggan V. Outbreak of acute larval cyathostominosis - A "perfect storm" of inflammation and dysbiosis. Equine Veterinary Journal. PMID 32920897 DOI: 10.1111/evj.13350  0.01
2020 Soltani S, Hammami R, Cotter PD, Rebuffat S, Said LB, Gaudreau H, Bédard F, Biron E, Drider D, Fliss I. Bacteriocins as a new generation of antimicrobials: Toxicity aspects and regulations. Fems Microbiology Reviews. PMID 32876664 DOI: 10.1093/Femsre/Fuaa039  0.01
2020 O'Connor KM, Lucking EF, Bastiaanssen TFS, Peterson VL, Crispie F, Cotter PD, Clarke G, Cryan JF, O'Halloran KD. Prebiotic administration modulates gut microbiota and faecal short-chain fatty acid concentrations but does not prevent chronic intermittent hypoxia-induced apnoea and hypertension in adult rats. Ebiomedicine. 59: 102968. PMID 32861200 DOI: 10.1016/J.Ebiom.2020.102968  0.01
2020 Mukherjee A, Lordan C, Ross RP, Cotter PD. Gut microbes from the phylogenetically diverse genus and their various contributions to gut health. Gut Microbes. 12: 1802866. PMID 32835590 DOI: 10.1080/19490976.2020.1802866  0.01
2020 Morais LH, Golubeva AV, Moloney GM, Moya-Pérez A, Ventura-Silva AP, Arboleya S, Bastiaanssen TFS, O'Sullivan O, Rea K, Borre Y, Scott KA, Patterson E, Cherry P, Stilling R, Hoban AE, ... ... Cotter PD, et al. Enduring Behavioral Effects Induced by Birth by Caesarean Section in the Mouse. Current Biology : Cb. PMID 32822606 DOI: 10.1016/J.Cub.2020.07.044  0.01
2020 Villarreal-Soto SA, Bouajila J, Pace M, Leech J, Cotter PD, Souchard JP, Taillandier P, Beaufort S. Metabolome-microbiome signatures in the fermented beverage, Kombucha. International Journal of Food Microbiology. 333: 108778. PMID 32731153 DOI: 10.1016/j.ijfoodmicro.2020.108778  0.01
2020 Bourrie BCT, Ju T, Fouhse JM, Forgie AJ, Sergi C, Cotter PD, Willing BP. Kefir Microbial Composition is a Deciding Factor in the Physiological Impact of Kefir in a Mouse Model of Obesity. The British Journal of Nutrition. 1-26. PMID 32684173 DOI: 10.1017/S0007114520002743  0.01
2020 O'Neill IJ, Sanchez Gallardo R, Saldova R, Murphy EF, Cotter PD, McAuliffe FM, van Sinderen D. Maternal and infant factors that shape neonatal gut colonization by bacteria. Expert Review of Gastroenterology & Hepatology. 1-14. PMID 32552141 DOI: 10.1080/17474124.2020.1784725  0.01
2020 Mathur H, Beresford TP, Cotter PD. Health Benefits of Lactic Acid Bacteria (LAB) Fermentates. Nutrients. 12. PMID 32512787 DOI: 10.3390/nu12061679  0.01
2020 Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome. Nature Communications. 11: 2610. PMID 32451391 DOI: 10.1038/S41467-020-16438-8  0.01
2020 van de Wouw M, Walsh AM, Crispie F, van Leuven L, Lyte JM, Boehme M, Clarke G, Dinan TG, Cotter PD, Cryan JF. Distinct actions of the fermented beverage kefir on host behaviour, immunity and microbiome gut-brain modules in the mouse. Microbiome. 8: 67. PMID 32423436 DOI: 10.1186/s40168-020-00846-5  0.01
2020 Walsh CJ, Healy S, O'Toole PW, Murphy EF, Cotter PD. The probiotic LC-XCAL™ improves metabolic health in a diet-induced obesity mouse model without altering the microbiome. Gut Microbes. 1-17. PMID 32403964 DOI: 10.1080/19490976.2020.1747330  0.01
2020 Peterson VL, Richards JB, Meyer PJ, Cabrera-Rubio R, Tripi JA, King CP, Polesskaya O, Baud A, Chitre AS, Bastiaanssen TFS, Woods LS, Crispie F, Dinan TG, Cotter PD, Palmer AA, et al. Sex-dependent associations between addiction-related behaviors and the microbiome in outbred rats. Ebiomedicine. 55: 102769. PMID 32403084 DOI: 10.1016/J.Ebiom.2020.102769  0.01
2020 Moore RL, Geraghty AA, Feehily C, Saldova R, Murphy EF, Van Sinderen D, Cotter PD, McAuliffe FM. Can a probiotic supplement in pregnancy result in transfer to the neonatal gut: A systematic review. Acta Obstetricia Et Gynecologica Scandinavica. PMID 32400910 DOI: 10.1111/aogs.13899  0.01
2020 Garcia-Gutierrez E, Walsh CJ, Sayavedra L, Diaz-Calvo T, Thapa D, Ruas-Madiedo P, Mayer MJ, Cotter PD, Narbad A. Genotypic and Phenotypic Characterization of Fecal Isolates Suggests Plasticity to Adapt to Different Human Body Sites. Frontiers in Microbiology. 11: 688. PMID 32373098 DOI: 10.3389/fmicb.2020.00688  0.01
2020 McHugh AJ, Feehily C, Fenelon MA, Gleeson D, Hill C, Cotter PD. Tracking the Dairy Microbiota from Farm Bulk Tank to Skimmed Milk Powder. Msystems. 5. PMID 32265313 DOI: 10.1128/mSystems.00226-20  0.01
2020 Fernández de Ullivarri M, Arbulu S, Garcia-Gutierrez E, Cotter PD. Antifungal Peptides as Therapeutic Agents. Frontiers in Cellular and Infection Microbiology. 10: 105. PMID 32257965 DOI: 10.3389/fcimb.2020.00105  0.01
2020 Garcia-Gutierrez E, O'Connor PM, Colquhoun IJ, Vior NM, Rodríguez JM, Mayer MJ, Cotter PD, Narbad A. Production of multiple bacteriocins, including the novel bacteriocin gassericin M, by Lactobacillus gasseri LM19, a strain isolated from human milk. Applied Microbiology and Biotechnology. PMID 32170384 DOI: 10.1007/s00253-020-10493-3  0.01
2020 Maher SE, O'Brien EC, Moore RL, Byrne DF, Geraghty AA, Saldova R, Murphy EF, Van Sinderen D, Cotter PD, McAuliffe FM. The association between the maternal diet and the maternal and infant gut microbiome: a systematic review. The British Journal of Nutrition. 1-29. PMID 32129734 DOI: 10.1017/S0007114520000847  0.01
2020 Garcia-Gutierrez E, O'Connor PM, Saalbach G, Walsh CJ, Hegarty JW, Guinane CM, Mayer MJ, Narbad A, Cotter PD. First evidence of production of the lantibiotic nisin P. Scientific Reports. 10: 3738. PMID 32111904 DOI: 10.1038/s41598-020-60623-0  0.01
2020 Alexa Oniciuc EA, Walsh CJ, Coughlan LM, Awad A, Simon CA, Ruiz L, Crispie F, Cotter PD, Alvarez-Ordóñez A. Dairy Products and Dairy-Processing Environments as a Reservoir of Antibiotic Resistance and Quorum-Quenching Determinants as Revealed through Functional Metagenomics. Msystems. 5. PMID 32071160 DOI: 10.1128/mSystems.00723-19  0.01
2020 Lawrence GW, Begley M, Cotter PD, Guinane CM. Potential Use of Biotherapeutic Bacteria to Target Colorectal Cancer-Associated Taxa. International Journal of Molecular Sciences. 21. PMID 32019270 DOI: 10.3390/ijms21030924  0.01
2020 O'Connor PM, Kuniyoshi TM, Oliveira RP, Hill C, Ross RP, Cotter PD. Antimicrobials for food and feed; a bacteriocin perspective. Current Opinion in Biotechnology. 61: 160-167. PMID 31968296 DOI: 10.1016/j.copbio.2019.12.023  0.01
2020 O'Reilly C, O'Sullivan Ó, Cotter PD, O'Connor PM, Shanahan F, Cullen A, Rea MC, Hill C, Coulter I, Ross RP. Encapsulated cyclosporine does not change the composition of the human microbiota when assessed and . Journal of Medical Microbiology. PMID 31958048 DOI: 10.1099/jmm.0.001130  0.01
2020 O' Donovan CM, Connor B, Madigan SM, Cotter PD, O' Sullivan O. Instances of altered gut microbiomes among Irish cricketers over periods of travel in the lead up to the 2016 World Cup: A sequencing analysis. Travel Medicine and Infectious Disease. 101553. PMID 31935465 DOI: 10.1016/j.tmaid.2020.101553  0.01
2020 O' Donovan CM, Connor B, Madigan SM, Cotter PD, O' Sullivan O. Instances of altered gut microbiomes among Irish cricketers over periods of travel in the lead up to the 2016 World Cup: A sequencing analysis. Travel Medicine and Infectious Disease. 101553. PMID 31935465 DOI: 10.1016/j.tmaid.2020.101553  0.01
2019 Barton W, O'Sullivan O, Cotter PD. Metabolic phenotyping of the human microbiome. F1000research. 8. PMID 31824656 DOI: 10.12688/f1000research.19481.1  0.01
2019 Lynch D, O'Connor PM, Cotter PD, Hill C, Field D, Begley M. Identification and characterisation of capidermicin, a novel bacteriocin produced by Staphylococcus capitis. Plos One. 14: e0223541. PMID 31618225 DOI: 10.1371/journal.pone.0223541  0.01
2019 Gildehaus L, Cotter P, Buck S, Sousa M, Hueffer K, Reynolds A. The Research, Advising, and Mentoring Professional: A Unique Approach to Supporting Underrepresented Students in Biomedical Research. Innovative Higher Education. 44: 119-131. PMID 31592203 DOI: 10.1007/S10755-018-9452-0  0.01
2019 O'Donovan CM, Madigan SM, Garcia-Perez I, Rankin A, O' Sullivan O, Cotter PD. Distinct microbiome composition and metabolome exists across subgroups of elite Irish athletes. Journal of Science and Medicine in Sport. PMID 31558359 DOI: 10.1016/j.jsams.2019.08.290  0.01
2019 Wosinska L, Cotter PD, O'Sullivan O, Guinane C. The Potential Impact of Probiotics on the Gut Microbiome of Athletes. Nutrients. 11. PMID 31546638 DOI: 10.3390/nu11102270  0.01
2019 McCormack UM, Curião T, Metzler-Zebeli BU, Wilkinson T, Reyer H, Crispie F, Cotter PD, Creevey CJ, Gardiner GE, Lawlor PG. Seeking to improve feed efficiency in pigs through microbial modulation via fecal microbiota transplantation in sows and dietary supplementation of offspring with inulin. Applied and Environmental Microbiology. PMID 31519656 DOI: 10.1128/Aem.01255-19  0.01
2019 Cabrera-Rubio R, Patterson AM, Cotter PD, Beraza N. Cholestasis induced by bile duct ligation promotes changes in the intestinal microbiome in mice. Scientific Reports. 9: 12324. PMID 31444478 DOI: 10.1038/s41598-019-48784-z  0.01
2019 Young W, Carco C, Mullaney J, Maclean P, Cotter P, Fraser K, McNabb W, Gearry R, Roy N. The Microbiome in Functional Gastrointestinal Disorders Is Characterized by Bacteria and Genes Involved in Carbohydrate and Bile Acid Metabolism (OR23-01-19). Current Developments in Nutrition. 3. PMID 31224674 DOI: 10.1093/cdn/nzz040.OR23-01-19  0.01
2019 McCormack UM, Curião T, Metzler-Zebeli BU, Magowan E, Berry DP, Reyer H, Prieto ML, Buzoianu SG, Harrison M, Rebeiz N, Crispie F, Cotter PD, O'Sullivan O, Gardiner GE, Lawlor PG. Porcine Feed Efficiency-Associated Intestinal Microbiota and Physiological Traits: Finding Consistent Cross-Locational Biomarkers for Residual Feed Intake. Msystems. 4. PMID 31213524 DOI: 10.1128/mSystems.00324-18  0.01
2019 Crowley GC, O'Mahony J, Coffey A, Sayers R, Cotter P. A rapid viability and drug-susceptibility assay utilizing mycobacteriophage as an indicator of drug susceptibilities of Anti-TB drugs against mc 155. International Journal of Mycobacteriology. 8: 124-131. PMID 31210153 DOI: 10.4103/ijmy.ijmy_47_19  0.01
2019 Slattery C, Cotter PD, O'Toole PW. Analysis of Health Benefits Conferred by Species from Kefir. Nutrients. 11. PMID 31159409 DOI: 10.3390/nu11061252  0.01
2019 Lordan C, Thapa D, Ross RP, Cotter PD. Potential for enriching next-generation health-promoting gut bacteria through prebiotics and other dietary components. Gut Microbes. 1-20. PMID 31116628 DOI: 10.1080/19490976.2019.1613124  0.01
2019 Miljkovic M, Jovanovic S, O'Connor PM, Mirkovic N, Jovcic B, Filipic B, Dinic M, Studholme DJ, Fira D, Cotter PD, Kojic M. Brevibacillus laterosporus strains BGSP7, BGSP9 and BGSP11 isolated from silage produce broad spectrum multi-antimicrobials. Plos One. 14: e0216773. PMID 31075157 DOI: 10.1371/journal.pone.0216773  0.01
2019 Keohane DM, Woods T, O'Connor P, Underwood S, Cronin O, Whiston R, O'Sullivan O, Cotter P, Shanahan F, Molloy MGM. Four men in a boat: Ultra-endurance exercise alters the gut microbiome. Journal of Science and Medicine in Sport. PMID 31053425 DOI: 10.1016/j.jsams.2019.04.004  0.01
2019 Fogarty C, Burgess CM, Cotter PD, Cabrera-Rubio R, Whyte P, Smyth C, Bolton D. Diversity and composition of the gut microbiota of Atlantic salmon (Salmo salar) farmed in Irish waters. Journal of Applied Microbiology. PMID 31021487 DOI: 10.1111/jam.14291  0.01
2019 Argüello H, Estellé J, Leonard FC, Crispie F, Cotter PD, O'Sullivan O, Lynch H, Walia K, Duffy G, Lawlor PG, Gardiner GE. Influence of the Intestinal Microbiota on Colonization Resistance to and the Shedding Pattern of Naturally Exposed Pigs. Msystems. 4. PMID 31020042 DOI: 10.1128/mSystems.00021-19  0.01
2019 Walshe N, Duggan V, Cabrera-Rubio R, Crispie F, Cotter P, Feehan O, Mulcahy G. Removal of adult cyathostomins alters faecal microbiota and promotes an inflammatory phenotype in horses. International Journal For Parasitology. PMID 30986403 DOI: 10.1016/j.ijpara.2019.02.003  0.01
2019 Ghanbari M, Klose V, Crispie F, Cotter PD. The dynamics of the antibiotic resistome in the feces of freshly weaned pigs following therapeutic administration of oxytetracycline. Scientific Reports. 9: 4062. PMID 30858509 DOI: 10.1038/s41598-019-40496-8  0.01
2019 Quigley L, Coakley M, Alemayehu D, Rea MC, Casey PG, O'Sullivan Ó, Murphy E, Kiely B, Cotter PD, Hill C, Ross RP. APC 678 Reduces Shedding of the Pathogen in a Murine Model. Frontiers in Microbiology. 10: 273. PMID 30842760 DOI: 10.3389/fmicb.2019.00273  0.01
2019 Boscaini S, Cabrera-Rubio R, Speakman JR, Cotter PD, Cryan JF, Nilaweera KN. Dietary alpha-lactalbumin alters energy balance, gut microbiota composition and intestinal nutrient transporter expression in high-fat diet fed mice. The British Journal of Nutrition. 1-26. PMID 30834845 DOI: 10.1017/S0007114519000461  0.01
2019 Cronin O, Barton W, Moran C, Sheehan D, Whiston R, Nugent H, McCarthy Y, Molloy CB, O'Sullivan O, Cotter PD, Molloy MG, Shanahan F. Moderate-intensity aerobic and resistance exercise is safe and favorably influences body composition in patients with quiescent Inflammatory Bowel Disease: a randomized controlled cross-over trial. Bmc Gastroenterology. 19: 29. PMID 30755154 DOI: 10.1186/s12876-019-0952-x  0.01
2019 Heras VL, Clooney AG, Ryan FJ, Cabrera-Rubio R, Casey PG, Hueston CM, Pinheiro J, Rudkin JK, Melgar S, Cotter PD, Hill C, Gahan CGM. Short-term consumption of a high-fat diet increases host susceptibility to Listeria monocytogenes infection. Microbiome. 7: 7. PMID 30658700 DOI: 10.1186/S40168-019-0621-X  0.01
2019 Alvarez-Ordóñez A, Coughlan LM, Briandet R, Cotter PD. Biofilms in Food Processing Environments: Challenges and Opportunities. Annual Review of Food Science and Technology. PMID 30653351 DOI: 10.1146/annurev-food-032818-121805  0.01
2018 Field D, Blake T, Mathur H, O'Connor PM, Cotter PD, Ross RP, Hill C. Bioengineering Nisin to overcome the Nisin Resistance Protein. Molecular Microbiology. PMID 30537404 DOI: 10.1111/mmi.14183  0.01
2018 Miljkovic M, Lozo J, Mirkovic N, O'Connor PM, Malesevic M, Jovcic B, Cotter PD, Kojic M. Functional Characterization of the Lactolisterin BU Gene Cluster of subsp. BGBU1-4. Frontiers in Microbiology. 9: 2774. PMID 30498487 DOI: 10.3389/fmicb.2018.02774  0.01
2018 Egan K, Field D, Ross RP, Cotter PD, Hill C. Prediction and Exploration of Potential Bacteriocin Gene Clusters Within the Bacterial Genus . Frontiers in Microbiology. 9: 2116. PMID 30298056 DOI: 10.3389/fmicb.2018.02116  0.01
2018 Kiernan MG, Coffey JC, McDermott K, Cotter PD, Cabrera-Rubio R, Kiely PA, Dunne CP. The human mesenteric lymph node microbiome differentiates between Crohn's disease and ulcerative colitis. Journal of Crohn's & Colitis. PMID 30239655 DOI: 10.1093/ecco-jcc/jjy136  0.01
2018 Matthews C, Crispie F, Lewis E, Reid M, O'Toole PW, Cotter PD. The rumen microbiome: a crucial consideration when optimising milk and meat production and nitrogen utilisation efficiency. Gut Microbes. 1-18. PMID 30207838 DOI: 10.1080/19490976.2018.1505176  0.01
2018 Milani C, Casey E, Lugli GA, Moore R, Kaczorowska J, Feehily C, Mangifesta M, Mancabelli L, Duranti S, Turroni F, Bottacini F, Mahony J, Cotter PD, McAuliffe FM, van Sinderen D, et al. Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX. Microbiome. 6: 145. PMID 30126456 DOI: 10.1186/s40168-018-0527-z  0.01
2018 Mesa-Pereira B, Rea MC, Cotter PD, Hill C, Ross RP. Heterologous Expression of Biopreservative Bacteriocins With a View to Low Cost Production. Frontiers in Microbiology. 9: 1654. PMID 30093889 DOI: 10.3389/fmicb.2018.01654  0.01
2018 O' Connor PM, O' Shea EF, Cotter PD, Hill C, Ross RP. The potency of the broad spectrum bacteriocin, bactofencin A, against staphylococci is highly dependent on primary structure, N-terminal charge and disulphide formation. Scientific Reports. 8: 11833. PMID 30087409 DOI: 10.1038/s41598-018-30271-6  0.01
2018 McHugh AJ, Feehily C, Tobin JT, Fenelon MA, Hill C, Cotter PD. Identification of Mesophilic Spore-formers in Whey Powder using Shotgun Metagenomic Sequencing. Applied and Environmental Microbiology. PMID 30076196 DOI: 10.1128/AEM.01305-18  0.01
2018 Esteban-Torres M, Santamaría L, Cabrera-Rubio R, Plaza-Vinuesa L, Crispie F, de Las Rivas B, Cotter P, Muñoz R. A diverse range of human gut bacteria have the potential to metabolise the dietary component gallic acid. Applied and Environmental Microbiology. PMID 30054365 DOI: 10.1128/AEM.01558-18  0.01
2018 Doyle CJ, O'Toole PW, Cotter PD. Genomic Characterization of Sulphite Reducing Bacteria Isolated From the Dairy Production Chain. Frontiers in Microbiology. 9: 1507. PMID 30026740 DOI: 10.3389/fmicb.2018.01507  0.01
2018 Gough R, Cabrera Rubio R, O'Connor PM, Crispie F, Brodkorb A, Miao S, Hill C, Ross RP, Cotter PD, Nilaweera KN, Rea MC. Oral Delivery of Nisin in Resistant Starch Based Matrices Alters the Gut Microbiota in Mice. Frontiers in Microbiology. 9: 1186. PMID 29963017 DOI: 10.3389/fmicb.2018.01186  0.01
2018 Yeluri Jonnala BR, McSweeney PLH, Sheehan JJ, Cotter PD. Sequencing of the Cheese Microbiome and Its Relevance to Industry. Frontiers in Microbiology. 9: 1020. PMID 29875744 DOI: 10.3389/fmicb.2018.01020  0.01
2018 Argüello H, Estellé J, Zaldívar-López S, Jiménez-Marín Á, Carvajal A, López-Bascón MA, Crispie F, O'Sullivan O, Cotter PD, Priego-Capote F, Morera L, Garrido JJ. Early Salmonella Typhimurium infection in pigs disrupts Microbiome composition and functionality principally at the ileum mucosa. Scientific Reports. 8: 7788. PMID 29773876 DOI: 10.1038/S41598-018-26083-3  0.01
2018 Cronin O, Barton W, Skuse P, Penney NC, Garcia-Perez I, Murphy EF, Woods T, Nugent H, Fanning A, Melgar S, Falvey EC, Holmes E, Cotter PD, O'Sullivan O, Molloy MG, et al. A Prospective Metagenomic and Metabolomic Analysis of the Impact of Exercise and/or Whey Protein Supplementation on the Gut Microbiome of Sedentary Adults. Msystems. 3. PMID 29719871 DOI: 10.1128/mSystems.00044-18  0.01
2018 Mathur H, Field D, Rea MC, Cotter PD, Hill C, Ross RP. Fighting biofilms with lantibiotics and other groups of bacteriocins. Npj Biofilms and Microbiomes. 4: 9. PMID 29707229 DOI: 10.1038/s41522-018-0053-6  0.01
2018 Johnston DGW, Williams MA, Thaiss CA, Cabrera-Rubio R, Raverdeau M, McEntee C, Cotter PD, Elinav E, O'Neill LAJ, Corr SC. Loss of microRNA-21 Influences the Gut Microbiota Causing Reduced Susceptibility in a Murine Model of Colitis. Journal of Crohn's & Colitis. PMID 29608690 DOI: 10.1093/ecco-jcc/jjy038  0.01
2018 Garcia-Gutierrez E, Mayer MJ, Cotter PD, Narbad A. Gut microbiota as a source of novel antimicrobials. Gut Microbes. 1-57. PMID 29584555 DOI: 10.1080/19490976.2018.1455790  0.01
2018 McCormack UM, Curião T, Wilkinson T, Metzler-Zebeli BU, Reyer H, Ryan T, Calderon-Diaz JA, Crispie F, Cotter PD, Creevey CJ, Gardiner GE, Lawlor PG. Fecal Microbiota Transplantation in Gestating Sows and Neonatal Offspring Alters Lifetime Intestinal Microbiota and Growth in Offspring. Msystems. 3. PMID 29577087 DOI: 10.1128/mSystems.00134-17  0.01
2018 Walsh AM, Crispie F, O'Sullivan O, Finnegan L, Claesson MJ, Cotter PD. Species classifier choice is a key consideration when analysing low-complexity food microbiome data. Microbiome. 6: 50. PMID 29554948 DOI: 10.1186/s40168-018-0437-0  0.01
2018 Lamichhane P, Pietrzyk A, Feehily C, Cotter PD, Mannion DT, Kilcawley KN, Kelly AL, Sheehan JJ. Effect of milk centrifugation and incorporation of high heat-treated centrifugate on the microbial composition and levels of volatile organic compounds of Maasdam cheese. Journal of Dairy Science. PMID 29550125 DOI: 10.3168/jds.2017-14180  0.01
2017 McElwaine P, McCormack J, McCormick M, Rudd A, Brennan C, Coetzee H, Cotter PE, Doyle R, Hickey A, Horgan F, Loughnane C, Macey C, Marsden P, McCabe D, Mulcahy R, et al. A comparison of service organisation and guideline compliance between two adjacent European health services. European Stroke Journal. 2: 238-243. PMID 31008317 DOI: 10.1177/2396987317703209  0.01
2017 Macori G, Romano A, Decastelli L, Cotter PD. Build the Read: A Hands-On Activity for Introducing Microbiology Students to Next-Generation DNA Sequencing and Bioinformatics. Journal of Microbiology & Biology Education. 18. PMID 29854049 DOI: 10.1128/jmbe.v18i3.1363  0.01
2017 Taylor BE, Reynolds AJ, Etz KE, MacCalla NMG, Cotter PA, DeRuyter TL, Hueffer K. BUILDing BLaST: promoting rural students' biomedical research careers using a culturally responsive, one health approach. Bmc Proceedings. 11: 13. PMID 29375656 DOI: 10.1186/S12919-017-0092-7  0.01
2017 Doherty FD, O'Mahony SM, Peterson VL, O'Sullivan O, Crispie F, Cotter PD, Wigmore P, King MV, Cryan JF, Fone KCF. Post-Weaning Social Isolation of Rats Leads to Long-term Disruption of the Gut Microbiota-Immune-Brain Axis. Brain, Behavior, and Immunity. PMID 29104061 DOI: 10.1016/j.bbi.2017.10.024  0.01
2017 Egan K, Kelleher P, Field D, Rea MC, Ross RP, Cotter PD, Hill C. Genome Sequence of Geobacillus stearothermophilus DSM 458, an Antimicrobial-Producing Thermophilic Bacterium, Isolated from a Sugar Beet Factory. Genome Announcements. 5. PMID 29074660 DOI: 10.1128/genomeA.01172-17  0.01
2017 Borrero J, Kelly E, O'Connor PM, Kelleher P, Scully C, Cotter PD, Mahony J, van Sinderen D. Purification, characterization and heterologous production of plantaricyclin A, a novel circular bacteriocin produced by Lactobacillus plantarum NI326. Applied and Environmental Microbiology. PMID 29030449 DOI: 10.1128/AEM.01801-17  0.01
2017 Macori G, Cotter PD. Novel insights into the microbiology of fermented dairy foods. Current Opinion in Biotechnology. 49: 172-178. PMID 28964915 DOI: 10.1016/j.copbio.2017.09.002  0.01
2017 Rathore R, Dowling DN, Forristal PD, Spink J, Cotter PD, Bulgarelli D, Germaine KJ. Crop Establishment Practices Are a Driver of the Plant Microbiota in Winter Oilseed Rape (Brassica napus). Frontiers in Microbiology. 8: 1489. PMID 28848510 DOI: 10.3389/fmicb.2017.01489  0.01
2017 Lozo J, Mirkovic N, O'Connor PM, Malesevic M, Miljkovic M, Polovic N, Jovcic B, Cotter PD, Kojic M. Lactolisterin BU, a novel Class II broad spectrum bacteriocin from Lactococcus lactis subsp. lactis bv. diacetylactis BGBU1-4. Applied and Environmental Microbiology. PMID 28842543 DOI: 10.1128/AEM.01519-17  0.01
2017 Huseyin CE, Rubio RC, O'Sullivan O, Cotter PD, Scanlan PD. The Fungal Frontier: A Comparative Analysis of Methods Used in the Study of the Human Gut Mycobiome. Frontiers in Microbiology. 8: 1432. PMID 28824566 DOI: 10.3389/fmicb.2017.01432  0.01
2017 Doyle CJ, O'Toole PW, Cotter PD. Metagenome-based surveillance and diagnostic approaches to studying the microbial ecology of food production and processing environments. Environmental Microbiology. PMID 28730722 DOI: 10.1111/1462-2920.13859  0.01
2017 Mathur H, Field D, Rea MC, Cotter PD, Hill C, Ross RP. Bacteriocin-Antimicrobial Synergy: A Medical and Food Perspective. Frontiers in Microbiology. 8: 1205. PMID 28706513 DOI: 10.3389/fmicb.2017.01205  0.01
2017 Romano A, Bellio A, Macori G, Cotter PD, Bianchi DM, Gallina S, Decastelli L. Whole-Genome Shotgun Sequence of Salmonella bongori, First Isolated in Northwestern Italy. Genome Announcements. 5. PMID 28684570 DOI: 10.1128/genomeA.00560-17  0.01
2017 Walsh AM, Crispie F, Daari K, O'Sullivan O, Martin JC, Arthur CT, Claesson MJ, Scott KP, Cotter PD. Strain-level metagenomic analysis of the fermented dairy beverage nunu highlights potential food safety risks. Applied and Environmental Microbiology. PMID 28625983 DOI: 10.1128/AEM.01144-17  0.01
2017 Mesa-Pereira B, O'Connor PM, Rea MC, Cotter PD, Hill C, Ross RP. Controlled functional expression of the bacteriocins pediocin PA-1 and bactofencin A in Escherichia coli. Scientific Reports. 7: 3069. PMID 28596555 DOI: 10.1038/s41598-017-02868-w  0.01
2017 Doyle CJ, Gleeson D, O'Toole PW, Cotter PD. High-throughput metataxonomic characterization of the raw milk microbiota identifies changes reflecting lactation stage and storage conditions. International Journal of Food Microbiology. 255: 1-6. PMID 28554065 DOI: 10.1016/j.ijfoodmicro.2017.05.019  0.01
2017 McCormack UM, Curião T, Buzoianu SG, Prieto ML, Ryan T, Varley P, Crispie F, Magowan E, Metzler-Zebeli BU, Berry D, O'Sullivan O, Cotter PD, Gardiner GE, Lawlor PG. Exploring a possible link between the intestinal microbiota and feed efficiency in pigs. Applied and Environmental Microbiology. PMID 28526795 DOI: 10.1128/AEM.00380-17  0.01
2017 Mathur H, Fallico V, O'Connor PM, Rea MC, Cotter PD, Hill C, Ross RP. Insights into the Mode of Action of the Sactibiotic Thuricin CD. Frontiers in Microbiology. 8: 696. PMID 28473822 DOI: 10.3389/fmicb.2017.00696  0.01
2017 Walsh CJ, Guinane CM, O' Toole PW, Cotter PD. A Profile Hidden Markov Model to investigate the distribution and frequency of LanB-encoding lantibiotic modification genes in the human oral and gut microbiome. Peerj. 5: e3254. PMID 28462050 DOI: 10.7717/peerj.3254  0.01
2017 Rankin A, O'Donavon C, Madigan SM, O'Sullivan O, Cotter PD. 'Microbes in sport' -The potential role of the gut microbiota in athlete health and performance. British Journal of Sports Medicine. 51: 698-699. PMID 28432108 DOI: 10.1136/bjsports-2016-097227  0.01
2017 Huseyin CE, O'Toole PW, Cotter PD, Scanlan PD. Forgotten fungi-the gut mycobiome in human health and disease. Fems Microbiology Reviews. PMID 28430946 DOI: 10.1093/femsre/fuw047  0.01
2017 Campion A, Morrissey R, Field D, Cotter PD, Hill C, Ross RP. Use of enhanced nisin derivatives in combination with food-grade oils or citric acid to control Cronobacter sakazakii and Escherichia coli O157:H7. Food Microbiology. 65: 254-263. PMID 28400011 DOI: 10.1016/j.fm.2017.01.020  0.01
2017 Barton W, Penney NC, Cronin O, Garcia-Perez I, Molloy MG, Holmes E, Shanahan F, Cotter PD, O'Sullivan O. The microbiome of professional athletes differs from that of more sedentary subjects in composition and particularly at the functional metabolic level. Gut. PMID 28360096 DOI: 10.1136/gutjnl-2016-313627  0.01
2017 Nilaweera KN, Cabrera-Rubio R, Speakman JR, O' Connor PM, McAuliffe A, Guinane CM, Lawton E, Crispie F, Aguilera M, Stanley M, Boscaini S, Joyce S, Melgar S, Cryan JF, Cotter PD. Whey protein-effects on energy balance link the intestinal mechanisms of energy absorption with adiposity and hypothalamic neuropeptide gene expression. American Journal of Physiology. Endocrinology and Metabolism. ajpendo.00356.2016. PMID 28325732 DOI: 10.1152/ajpendo.00356.2016  0.01
2017 Walsh AM, Crispie F, Kilcawley K, O'Sullivan O, O'Sullivan MG, Claesson MJ, Cotter PD. Correction for Walsh et al., Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir. Msystems. 2. PMID 28251185 DOI: 10.1128/mSystems.00003-17  0.01
2017 Pereira-Fantini PM, Byars SG, Pitt J, Lapthorne S, Fouhy F, Cotter PD, Bines JE. Unravelling the metabolic impact of SBS-associated microbial dysbiosis: Insights from the piglet short bowel syndrome model. Scientific Reports. 7: 43326. PMID 28230078 DOI: 10.1038/srep43326  0.01
2017 McHugh AJ, Feehily C, Hill C, Cotter PD. Detection and Enumeration of Spore-Forming Bacteria in Powdered Dairy Products. Frontiers in Microbiology. 8: 109. PMID 28197144 DOI: 10.3389/fmicb.2017.00109  0.01
2017 Peterson VL, Jury NJ, Cabrera-Rubio R, Draper LA, Crispie F, Cotter PD, Dinan TG, Holmes A, Cryan JF. Drunk Bugs: Chronic Vapour Alcohol Exposure Induces Marked Changes in the Gut Microbiome in Mice. Behavioural Brain Research. PMID 28161446 DOI: 10.1016/J.Bbr.2017.01.049  0.01
2017 Walsh AM, Crispie F, Claesson MJ, Cotter PD. Translating Omics to Food Microbiology. Annual Review of Food Science and Technology. PMID 28125344 DOI: 10.1146/annurev-food-030216-025729  0.01
2017 Cronin O, O'Sullivan O, Barton W, Cotter PD, Molloy MG, Shanahan F. Gut microbiota: implications for sports and exercise medicine. British Journal of Sports Medicine. PMID 28077354 DOI: 10.1136/bjsports-2016-097225  0.01
2016 Marco ML, Heeney D, Binda S, Cifelli CJ, Cotter PD, Foligné B, Gänzle M, Kort R, Pasin G, Pihlanto A, Smid EJ, Hutkins R. Health benefits of fermented foods: microbiota and beyond. Current Opinion in Biotechnology. 44: 94-102. PMID 27998788 DOI: 10.1016/J.Copbio.2016.11.010  0.01
2016 Smith MK, Draper LA, Hazelhoff PJ, Cotter PD, Ross RP, Hill C. A Bioengineered Nisin Derivative, M21A, in Combination with Food Grade Additives Eradicates Biofilms of Listeria monocytogenes. Frontiers in Microbiology. 7: 1939. PMID 27965658 DOI: 10.3389/fmicb.2016.01939  0.01
2016 Hegarty JW, Guinane CM, Ross RP, Hill C, Cotter PD. Bacteriocin production: a relatively unharnessed probiotic trait? F1000research. 5: 2587. PMID 27853525 DOI: 10.12688/f1000research.9615.1  0.01
2016 Field D, Seisling N, Cotter PD, Ross RP, Hill C. Synergistic Nisin-Polymyxin Combinations for the Control of Pseudomonas Biofilm Formation. Frontiers in Microbiology. 7: 1713. PMID 27833601 DOI: 10.3389/fmicb.2016.01713  0.01
2016 Walsh AM, Crispie F, Kilcawley K, O'Sullivan O, O'Sullivan MG, Claesson MJ, Cotter PD. Microbial Succession and Flavor Production in the Fermented Dairy Beverage Kefir. Msystems. 1. PMID 27822552 DOI: 10.1128/mSystems.00052-16  0.01
2016 Quigley L, O'Sullivan DJ, Daly D, O'Sullivan O, Burdikova Z, Vana R, Beresford TP, Ross RP, Fitzgerald GF, McSweeney PL, Giblin L, Sheehan JJ, Cotter PD. Thermus and the Pink Discoloration Defect in Cheese. Msystems. 1. PMID 27822529 DOI: 10.1128/mSystems.00023-16  0.01
2016 Doyle CJ, Gleeson D, O'Toole PW, Cotter PD. High-throughput sequencing highlights the significant influence of seasonal housing and teat preparation on the raw milk microbiota. Applied and Environmental Microbiology. PMID 27815277 DOI: 10.1128/AEM.02694-16  0.01
2016 Coughlan LM, Cotter PD, Hill C, Alvarez-Ordóñez A. New Weapons to Fight Old Enemies: Novel Strategies for the (Bio)control of Bacterial Biofilms in the Food Industry. Frontiers in Microbiology. 7: 1641. PMID 27803696 DOI: 10.3389/fmicb.2016.01641  0.01
2016 Cotter PF, Bakst MR. A comparison of Mott cell morphology of three avian species. II. - Bad behavior by plasmacytes? Poultry Science. PMID 27591280 DOI: 10.3382/ps/pew288  0.01
2016 Scanlan PD, Knight R, Song SJ, Ackermann G, Cotter PD. Prevalence and genetic diversity of Blastocystis in family units living in the United States. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. PMID 27545648 DOI: 10.1016/j.meegid.2016.08.018  1
2016 Fouhy F, Clooney AG, Stanton C, Claesson MJ, Cotter PD. 16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform. Bmc Microbiology. 16: 123. PMID 27342980 DOI: 10.1186/s12866-016-0738-z  0.01
2016 Mathur H, Rea MC, Cotter PD, Hill C, Ross RP. The efficacy of thuricin CD, tigecycline, vancomycin, teicoplanin, rifampicin and nitazoxanide, independently and in paired combinations against Clostridium difficile biofilms and planktonic cells. Gut Pathogens. 8: 20. PMID 27257437 DOI: 10.1186/s13099-016-0102-8  0.01
2016 Bourrie BC, Willing BP, Cotter PD. The Microbiota and Health Promoting Characteristics of the Fermented Beverage Kefir. Frontiers in Microbiology. 7: 647. PMID 27199969 DOI: 10.3389/fmicb.2016.00647  1
2016 Guinane CM, Lawton EM, O'Connor PM, O'Sullivan Ó, Hill C, Ross RP, Cotter PD. The bacteriocin bactofencin A subtly modulates gut microbial populations. Anaerobe. PMID 27154638 DOI: 10.1016/j.anaerobe.2016.05.001  0.01
2016 Field D, O' Connor R, Cotter PD, Ross RP, Hill C. In Vitro Activities of Nisin and Nisin Derivatives Alone and In Combination with Antibiotics against Staphylococcus Biofilms. Frontiers in Microbiology. 7: 508. PMID 27148197 DOI: 10.3389/fmicb.2016.00508  1
2016 Egan K, Field D, Rea MC, Ross RP, Hill C, Cotter PD. Bacteriocins: Novel Solutions to Age Old Spore-Related Problems? Frontiers in Microbiology. 7: 461. PMID 27092121 DOI: 10.3389/fmicb.2016.00461  1
2016 Romano S, Fernàndez-Guerra A, Reen FJ, Glöckner FO, Crowley SP, O'Sullivan O, Cotter PD, Adams C, Dobson AD, O'Gara F. Comparative Genomic Analysis Reveals a Diverse Repertoire of Genes Involved in Prokaryote-Eukaryote Interactions within the Pseudovibrio Genus. Frontiers in Microbiology. 7: 387. PMID 27065959 DOI: 10.3389/fmicb.2016.00387  0.01
2016 Pereira-Fantini PM, Bines JE, Lapthorne S, Fouhy F, Scurr M, Cotter PD, Gahan CG, Joyce SA. Short bowel syndrome (SBS)-associated alterations within the gut-liver axis evolve early and persist long-term in the piglet model of short bowel syndrome. Journal of Gastroenterology and Hepatology. PMID 27037739 DOI: 10.1111/jgh.13383  0.01
2016 Zhang Q, Zeng QF, Cotter P, Applegate TJ. Dietary threonine response of Pekin ducks from hatch to 14 d of age based on performance, serology, and intestinal mucin secretion. Poultry Science. PMID 26944967 DOI: 10.3382/ps/pew032  1
2016 Stefanovic E, Casey A, Cotter P, Cavanagh D, Fitzgerald G, McAuliffe O. Draft Genome Sequence of Lactobacillus casei DPC6800, an Isolate with the Potential to Diversify Flavor in Cheese. Genome Announcements. 4. PMID 26941145 DOI: 10.1128/genomeA.00063-16  0.01
2016 Vartia S, Villanueva-Cañas JL, Finarelli J, Farrell ED, Collins PC, Hughes GM, Carlsson JE, Gauthier DT, McGinnity P, Cross TF, FitzGerald RD, Mirimin L, Crispie F, Cotter PD, Carlsson J. A novel method of microsatellite genotyping-by-sequencing using individual combinatorial barcoding. Royal Society Open Science. 3: 150565. PMID 26909185 DOI: 10.1098/Rsos.150565  0.01
2016 Clooney AG, Fouhy F, Sleator RD, O' Driscoll A, Stanton C, Cotter PD, Claesson MJ. Comparing Apples and Oranges?: Next Generation Sequencing and Its Impact on Microbiome Analysis. Plos One. 11: e0148028. PMID 26849217 DOI: 10.1371/journal.pone.0148028  0.01
2016 Kovaleva NV, Cotter PD. Somatic/gonadal mosaicism for structural autosomal rearrangements: female predominance among carriers of gonadal mosaicism for unbalanced rearrangements. Molecular Cytogenetics. 9: 8. PMID 26823686 DOI: 10.1186/s13039-015-0211-y  1
2016 O'Sullivan DJ, McSweeney PL, Cotter PD, Giblin L, Sheehan JJ. Compromised Lactobacillus helveticus starter activity in the presence of facultative heterofermentative Lactobacillus casei DPC6987 results in atypical eye formation in Swiss-type cheese. Journal of Dairy Science. PMID 26805985 DOI: 10.3168/jds.2015-10503  1
2016 Parente E, Cocolin L, De Filippis F, Zotta T, Ferrocino I, O'Sullivan O, Neviani E, De Angelis M, Cotter PD, Ercolini D. FoodMicrobionet: A database for the visualisation and exploration of food bacterial communities based on network analysis. International Journal of Food Microbiology. 219: 28-37. PMID 26704067 DOI: 10.1016/j.ijfoodmicro.2015.12.001  0.01
2016 Otts SS, Janasie C, Cotter P. Working together to combat invasive species threats: Strategies for facilitating cooperation between the national park service and states Natural Resources Journal. 56: 117-143.  1
2016 Cotter PF, Heller ED. Complex hemograms of isolator raised specific pathogen free (SPF) chicks International Journal of Poultry Science. 15: 211-217.  1
2015 Gopal N, Hill C, Ross PR, Beresford TP, Fenelon MA, Cotter PD. The Prevalence and Control of Bacillus and Related Spore-Forming Bacteria in the Dairy Industry. Frontiers in Microbiology. 6: 1418. PMID 26733963 DOI: 10.3389/fmicb.2015.01418  0.01
2015 McManus B, Korpela R, O'Connor P, Schellekens H, Cryan JF, Cotter PD, Nilaweera KN. Compared to casein, bovine lactoferrin reduces plasma leptin and corticosterone and affects hypothalamic gene expression without altering weight gain or fat mass in high fat diet fed C57/BL6J mice. Nutrition & Metabolism. 12: 53. PMID 26649066 DOI: 10.1186/s12986-015-0049-7  1
2015 Field D, Cotter PD, Hill C, Ross RP. Bioengineering Lantibiotics for Therapeutic Success. Frontiers in Microbiology. 6: 1363. PMID 26640466 DOI: 10.3389/fmicb.2015.01363  0.01
2015 O'Sullivan DJ, Fallico V, O'Sullivan O, McSweeney PL, Sheehan JJ, Cotter PD, Giblin L. High-throughput DNA sequencing to survey bacterial histidine and tyrosine decarboxylases in raw milk cheeses. Bmc Microbiology. 15: 266. PMID 26577209 DOI: 10.1186/s12866-015-0596-0  1
2015 Pusceddu MM, El Aidy S, Crispie F, O'Sullivan O, Cotter P, Stanton C, Kelly P, Cryan JF, Dinan TG. Correction: N-3 Polyunsaturated Fatty Acids (PUFAs) Reverse the Impact of Early-Life Stress on the Gut Microbiota. Plos One. 10: e0142228. PMID 26517367 DOI: 10.1371/journal.pone.0142228  0.01
2015 Pusceddu MM, El Aidy S, Crispie F, O'Sullivan O, Cotter P, Stanton C, Kelly P, Cryan JF, Dinan TG. N-3 Polyunsaturated Fatty Acids (PUFAs) Reverse the Impact of Early-Life Stress on the Gut Microbiota. Plos One. 10: e0139721. PMID 26426902 DOI: 10.1371/journal.pone.0139721  1
2015 Walsh CJ, Guinane CM, Hill C, Ross RP, O'Toole PW, Cotter PD. In silico identification of bacteriocin gene clusters in the gastrointestinal tract, based on the Human Microbiome Project's reference genome database. Bmc Microbiology. 15: 183. PMID 26377179 DOI: 10.1186/s12866-015-0515-4  1
2015 Guinane CM, Piper C, Draper LA, O'Connor PM, Hill C, Ross RP, Cotter PD. Impact of Environmental Factors on Bacteriocin Promoter Activity in Gut-Derived Lactobacillus salivarius. Applied and Environmental Microbiology. 81: 7851-9. PMID 26341205 DOI: 10.1128/AEM.02339-15  0.01
2015 Desbonnet L, Clarke G, O'Sullivan O, Cotter PD, Dinan TG, Cryan JF. Re: Gut microbiota depletion from early adolescence in mice: Implications for brain and behaviour. Brain, Behavior, and Immunity. PMID 26271708 DOI: 10.1016/j.bbi.2015.07.011  1
2015 McManus BL, Korpela R, Speakman JR, Cryan JF, Cotter PD, Nilaweera KN. Bovine serum albumin as the dominant form of dietary protein reduces subcutaneous fat mass, plasma leptin and plasma corticosterone in high fat-fed C57/BL6J mice. The British Journal of Nutrition. 114: 654-62. PMID 26189974 DOI: 10.1017/S0007114515002123  0.01
2015 Coughlan LM, Cotter PD, Hill C, Alvarez-Ordóñez A. Biotechnological applications of functional metagenomics in the food and pharmaceutical industries. Frontiers in Microbiology. 6: 672. PMID 26175729 DOI: 10.3389/fmicb.2015.00672  0.01
2015 Golubeva AV, Crampton S, Desbonnet L, Edge D, O'Sullivan O, Lomasney KW, Zhdanov AV, Crispie F, Moloney RD, Borre YE, Cotter PD, Hyland NP, O'Halloran KD, Dinan TG, O'Keeffe GW, et al. Prenatal stress-induced alterations in major physiological systems correlate with gut microbiota composition in adulthood. Psychoneuroendocrinology. 60: 58-74. PMID 26135201 DOI: 10.1016/J.Psyneuen.2015.06.002  1
2015 Cotter PF. Atypical lymphocytes and leukocytes in the peripheral circulation of caged hens. Poultry Science. 94: 1439-45. PMID 26038581 DOI: 10.3382/ps/pev157  1
2015 Mathur H, Rea MC, Cotter PD, Hill C, Ross RP. The sactibiotic subclass of bacteriocins: an update. Current Protein & Peptide Science. 16: 549-58. PMID 26031307  1
2015 Field D, Cotter PD, Ross RP, Hill C. Bioengineering of the model lantibiotic nisin. Bioengineered. 6: 187-92. PMID 25970137 DOI: 10.1080/21655979.2015.1049781  1
2015 Lapthorne S, Bines JE, Fouhy F, Dellios NL, Wilson G, Thomas SL, Scurr M, Stanton C, Cotter PD, Pereira-Fantini PM. Changes in the colon microbiota and intestinal cytokine gene expression following minimal intestinal surgery. World Journal of Gastroenterology : Wjg. 21: 4150-8. PMID 25892864 DOI: 10.3748/wjg.v21.i14.4150  1
2015 Ward F, Crowley P, Cotter PE. Acute cerebellar syndrome associated with metronidazole. Practical Neurology. 15: 298-9. PMID 25882055 DOI: 10.1136/practneurol-2014-000974  1
2015 Desbonnet L, Clarke G, Traplin A, O'Sullivan O, Crispie F, Moloney RD, Cotter PD, Dinan TG, Cryan JF. Gut microbiota depletion from early adolescence in mice: Implications for brain and behaviour. Brain, Behavior, and Immunity. 48: 165-173. PMID 25866195 DOI: 10.1016/j.bbi.2015.04.004  1
2015 Cavanagh D, Casey A, Altermann E, Cotter PD, Fitzgerald GF, McAuliffe O. Evaluation of Lactococcus lactis Isolates from Nondairy Sources with Potential Dairy Applications Reveals Extensive Phenotype-Genotype Disparity and Implications for a Revised Species. Applied and Environmental Microbiology. 81: 3961-72. PMID 25841018 DOI: 10.1128/AEM.04092-14  1
2015 Scanlan PD, Stensvold CR, Cotter PD. Development and Application of a Blastocystis Subtype-Specific PCR Assay Reveals that Mixed-Subtype Infections Are Common in a Healthy Human Population. Applied and Environmental Microbiology. 81: 4071-6. PMID 25841010 DOI: 10.1128/AEM.00520-15  1
2015 O'Connor PM, O'Shea EF, Guinane CM, O'Sullivan O, Cotter PD, Ross RP, Hill C. Nisin H Is a New Nisin Variant Produced by the Gut-Derived Strain Streptococcus hyointestinalis DPC6484. Applied and Environmental Microbiology. 81: 3953-60. PMID 25841003 DOI: 10.1128/AEM.00212-15  1
2015 O'Sullivan O, Cronin O, Clarke SF, Murphy EF, Molloy MG, Shanahan F, Cotter PD. Exercise and the microbiota. Gut Microbes. 6: 131-6. PMID 25800089 DOI: 10.1080/19490976.2015.1011875  1
2015 Field D, Gaudin N, Lyons F, O'Connor PM, Cotter PD, Hill C, Ross RP. A bioengineered nisin derivative to control biofilms of Staphylococcus pseudintermedius. Plos One. 10: e0119684. PMID 25789988 DOI: 10.1371/journal.pone.0119684  0.01
2015 Draper LA, Cotter PD, Hill C, Ross RP. Lantibiotic resistance. Microbiology and Molecular Biology Reviews : Mmbr. 79: 171-91. PMID 25787977 DOI: 10.1128/MMBR.00051-14  1
2015 Fouhy F, Stanton C, Cotter PD, Hill C, Walsh F. Proteomics as the final step in the functional metagenomics study of antimicrobial resistance. Frontiers in Microbiology. 6: 172. PMID 25784907 DOI: 10.3389/fmicb.2015.00172  0.01
2015 Cotter PF. Are peripheral Mott cells an indication of stress or inefficient immunity? Poultry Science. 94: 1433-8. PMID 25725075 DOI: 10.3382/ps/pev053  1
2015 Marques TM, Wall R, O'Sullivan O, Fitzgerald GF, Shanahan F, Quigley EM, Cotter PD, Cryan JF, Dinan TG, Ross RP, Stanton C. Dietary trans-10, cis-12-conjugated linoleic acid alters fatty acid metabolism and microbiota composition in mice. The British Journal of Nutrition. 113: 728-38. PMID 25697178 DOI: 10.1017/S0007114514004206  1
2015 Field D, Daly K, O'Connor PM, Cotter PD, Hill C, Ross RP. Efficacies of nisin A and nisin V semipurified preparations alone and in combination with plant essential oils for controlling Listeria monocytogenes. Applied and Environmental Microbiology. 81: 2762-9. PMID 25662980 DOI: 10.1128/AEM.00070-15  1
2015 O'Sullivan DJ, Cotter PD, O'Sullivan O, Giblin L, McSweeney PL, Sheehan JJ. Temporal and spatial differences in microbial composition during the manufacture of a continental-type cheese. Applied and Environmental Microbiology. 81: 2525-33. PMID 25636841 DOI: 10.1128/Aem.04054-14  0.01
2015 Doyle CJ, Gleeson D, Jordan K, Beresford TP, Ross RP, Fitzgerald GF, Cotter PD. Anaerobic sporeformers and their significance with respect to milk and dairy products. International Journal of Food Microbiology. 197: 77-87. PMID 25574847 DOI: 10.1016/j.ijfoodmicro.2014.12.022  1
2015 Cotter PF. An examination of the utility of heterophil-lymphocyte ratios in assessing stress of caged hens. Poultry Science. 94: 512-7. PMID 25480738 DOI: 10.3382/ps/peu009  1
2015 Ward F, McGovern R, Cotter PE. Troponin-I is a predictor of a delayed diagnosis of atrial fibrillation in acute ischemic stroke and transient ischemic attack Journal of Stroke and Cerebrovascular Diseases. 24: 66-72. PMID 25440352 DOI: 10.1016/j.jstrokecerebrovasdis.2014.07.038  1
2015 Patterson E, Marques TM, O'Sullivan O, Fitzgerald P, Fitzgerald GF, Cotter PD, Dinan TG, Cryan JF, Stanton C, Ross RP. Streptozotocin-induced type-1-diabetes disease onset in Sprague-Dawley rats is associated with an altered intestinal microbiota composition and decreased diversity. Microbiology (Reading, England). 161: 182-93. PMID 25370749 DOI: 10.1099/mic.0.082610-0  1
2015 Shanahan F, Clarke SF, Murphy EF, O'Sullivan O, Cotter P. Author response: Linking lifestyle and microbes. Gut. 64: 520. PMID 25107556 DOI: 10.1136/gutjnl-2014-308107  1
2015 Nguyen LK, Degasperi A, Cotter P, Kholodenko BN. DYVIPAC: An integrated analysis and visualisation framework to probe multi-dimensional biological networks Scientific Reports. 5. DOI: 10.1038/srep12569  1
2015 Kitty V, Cotter PD. General introduction The Impact of Food Bioactives On Health: in Vitro and Ex Vivo Models. DOI: 10.1007/978-3-319-16104-4  1
2015 Cotter P. Introduction Poetry. 206: 443-445.  1
2014 Mathur H, Rea MC, Cotter PD, Ross RP, Hill C. The potential for emerging therapeutic options for Clostridium difficile infection. Gut Microbes. 5: 696-710. PMID 25564777 DOI: 10.4161/19490976.2014.983768  1
2014 Crowley SP, O'Gara F, O'Sullivan O, Cotter PD, Dobson AD. Marine Pseudovibrio sp. as a novel source of antimicrobials. Marine Drugs. 12: 5916-29. PMID 25501794 DOI: 10.3390/md12125916  0.01
2014 Robinson SM, Ní Bhuachalla B, Ní Mhaille B, Cotter PE, O'Connor M, O'Keeffe ST. Home, please: A conjoint analysis of patient preferences after a bad hip fracture. Geriatrics & Gerontology International. PMID 25407779 DOI: 10.1111/ggi.12415  0.01
2014 London LE, Kumar AH, Wall R, Casey PG, O'Sullivan O, Shanahan F, Hill C, Cotter PD, Fitzgerald GF, Ross RP, Caplice NM, Stanton C. Exopolysaccharide-producing probiotic Lactobacilli reduce serum cholesterol and modify enteric microbiota in ApoE-deficient mice. The Journal of Nutrition. 144: 1956-62. PMID 25320181 DOI: 10.3945/jn.114.191627  1
2014 Fouhy F, Ogilvie LA, Jones BV, Ross RP, Ryan AC, Dempsey EM, Fitzgerald GF, Stanton C, Cotter PD. Identification of aminoglycoside and β-lactam resistance genes from within an infant gut functional metagenomic library. Plos One. 9: e108016. PMID 25247417 DOI: 10.1371/journal.pone.0108016  1
2014 Scanlan PD, Stensvold CR, Rajili?-Stojanovi? M, Heilig HG, De Vos WM, O'Toole PW, Cotter PD. The microbial eukaryote Blastocystis is a prevalent and diverse member of the healthy human gut microbiota. Fems Microbiology Ecology. 90: 326-30. PMID 25077936 DOI: 10.1111/1574-6941.12396  1
2014 Clarke SF, Murphy EF, O'Sullivan O, Lucey AJ, Humphreys M, Hogan A, Hayes P, O'Reilly M, Jeffery IB, Wood-Martin R, Kerins DM, Quigley E, Ross RP, O'Toole PW, Molloy MG, ... ... Cotter PD, et al. Exercise and associated dietary extremes impact on gut microbial diversity. Gut. 63: 1913-20. PMID 25021423 DOI: 10.1136/gutjnl-2013-306541  1
2014 Pereira-Fantini PM, Lapthorne S, Joyce SA, Dellios NL, Wilson G, Fouhy F, Thomas SL, Scurr M, Hill C, Gahan CG, Cotter PD, Fuller PJ, Hardikar W, Bines JE. Altered FXR signalling is associated with bile acid dysmetabolism in short bowel syndrome-associated liver disease. Journal of Hepatology. 61: 1115-25. PMID 24999016 DOI: 10.1016/j.jhep.2014.06.025  1
2014 Cotter PD. An 'Upp'-turn in bacteriocin receptor identification. Molecular Microbiology. 92: 1159-63. PMID 24811684 DOI: 10.1111/mmi.12645  1
2014 Rychli K, Guinane CM, Daly K, Hill C, Cotter PD. Generation of nonpolar deletion mutants in Listeria monocytogenes using the "SOEing" method. Methods in Molecular Biology (Clifton, N.J.). 1157: 187-200. PMID 24792559 DOI: 10.1007/978-1-4939-0703-8_16  1
2014 Lucid A, Bullman S, Koziel M, Corcoran GD, Cotter PD, Sleator RD, Lucey B. Draft Genome Sequence of Campylobacter ureolyticus Strain CIT007, the First Whole-Genome Sequence of a Clinical Isolate. Genome Announcements. 2. PMID 24723712 DOI: 10.1128/genomeA.00262-14  0.01
2014 Mathur H, O'Connor PM, Cotter PD, Hill C, Ross RP. Heterologous expression of thuricin CD immunity genes in Listeria monocytogenes. Antimicrobial Agents and Chemotherapy. 58: 3421-8. PMID 24709257 DOI: 10.1128/AAC.00090-14  0.01
2014 Walsh CJ, Guinane CM, O'Toole PW, Cotter PD. Beneficial modulation of the gut microbiota. Febs Letters. 588: 4120-30. PMID 24681100 DOI: 10.1016/j.febslet.2014.03.035  1
2014 Clayton EM, Daly KM, Guinane CM, Hill C, Cotter PD, Ross PR. Atypical Listeria innocua strains possess an intact LIPI-3. Bmc Microbiology. 14: 58. PMID 24606727 DOI: 10.1186/1471-2180-14-58  1
2014 Agarwal S, Day DJ, Sibson L, Barry PJ, Collas D, Metcalf K, Cotter PE, Guyler P, O'Brien EW, O'Brien A, O'Kane D, Owusu-Agyei P, Phillips P, Shekhar R, Warburton EA. Thrombolysis delivery by a regional telestroke network--experience from the U.K. National Health Service. Journal of the American Heart Association. 3: e000408. PMID 24572251 DOI: 10.1161/JAHA.113.000408  0.01
2014 Patterson E, O' Doherty RM, Murphy EF, Wall R, O' Sullivan O, Nilaweera K, Fitzgerald GF, Cotter PD, Ross RP, Stanton C. Impact of dietary fatty acids on metabolic activity and host intestinal microbiota composition in C57BL/6J mice. The British Journal of Nutrition. 1-13. PMID 24555449 DOI: 10.1017/S0007114514000117  1
2014 McAllan L, Skuse P, Cotter PD, O'Connor P, Cryan JF, Ross RP, Fitzgerald G, Roche HM, Nilaweera KN. Protein quality and the protein to carbohydrate ratio within a high fat diet influences energy balance and the gut microbiota in C57BL/6J mice. Plos One. 9: e88904. PMID 24520424 DOI: 10.1371/journal.pone.0088904  1
2014 Fouhy F, Ross RP, Fitzgerald GF, Stanton C, Cotter PD. A degenerate PCR-based strategy as a means of identifying homologues of aminoglycoside and β-lactam resistance genes in the gut microbiota. Bmc Microbiology. 14: 25. PMID 24499167 DOI: 10.1186/1471-2180-14-25  1
2014 Marsh AJ, O'Sullivan O, Hill C, Ross RP, Cotter PD. Sequence-based analysis of the bacterial and fungal compositions of multiple kombucha (tea fungus) samples. Food Microbiology. 38: 171-8. PMID 24290641 DOI: 10.1016/j.fm.2013.09.003  1
2014 Towobola A, Cunningham E, Cotter P. Improving general practitioners’ referral details of antidepressant use for patients referred for depression to primary mental health care: Re-audit Irish Journal of Psychological Medicine. 32: 331-336. DOI: 10.1017/ipm.2014.92  1
2013 Fouhy F, O'Connell Motherway M, Fitzgerald GF, Ross RP, Stanton C, van Sinderen D, Cotter PD. In silico assigned resistance genes confer Bifidobacterium with partial resistance to aminoglycosides but not to β-lactams. Plos One. 8: e82653. PMID 24324818 DOI: 10.1371/journal.pone.0082653  1
2013 Healy B, Field D, O'Connor PM, Hill C, Cotter PD, Ross RP. Intensive mutagenesis of the nisin hinge leads to the rational design of enhanced derivatives. Plos One. 8: e79563. PMID 24244524 DOI: 10.1371/journal.pone.0079563  0.01
2013 O'Shea EF, O'Connor PM, O'Sullivan O, Cotter PD, Ross RP, Hill C. Bactofencin A, a new type of cationic bacteriocin with unusual immunity. Mbio. 4: e00498-13. PMID 24169573 DOI: 10.1128/mBio.00498-13  0.01
2013 Müller A, Rychli K, Muhterem-Uyar M, Zaiser A, Stessl B, Guinane CM, Cotter PD, Wagner M, Schmitz-Esser S. Tn6188 - a novel transposon in Listeria monocytogenes responsible for tolerance to benzalkonium chloride. Plos One. 8: e76835. PMID 24098567 DOI: 10.1371/journal.pone.0076835  0.01
2013 Buzoianu SG, Walsh MC, Rea MC, Quigley L, O'Sullivan O, Cotter PD, Ross RP, Gardiner GE, Lawlor PG. Sequence-based analysis of the intestinal Microbiota of sows and their offspring fed genetically modified maize expressing a truncated form of Bacillus thuringiensis Cry1Ab protein (Bt Maize). Applied and Environmental Microbiology. 79: 7735-44. PMID 24096421 DOI: 10.1128/AEM.02937-13  1
2013 Draper LA, Cotter PD, Hill C, Ross RP. The two peptide lantibiotic lacticin 3147 acts synergistically with polymyxin to inhibit Gram negative bacteria. Bmc Microbiology. 13: 212. PMID 24069959 DOI: 10.1186/1471-2180-13-212  0.01
2013 Phin S, Moore MW, Cotter PD. Genomic Rearrangements of PTEN in Prostate Cancer. Frontiers in Oncology. 3: 240. PMID 24062990 DOI: 10.3389/fonc.2013.00240  1
2013 Marsh AJ, O'Sullivan O, Hill C, Ross RP, Cotter PD. Sequence-based analysis of the microbial composition of water kefir from multiple sources. Fems Microbiology Letters. 348: 79-85. PMID 24004255 DOI: 10.1111/1574-6968.12248  0.01
2013 Marsh AJ, O'Sullivan O, Hill C, Ross RP, Cotter PD. Sequencing-based analysis of the bacterial and fungal composition of kefir grains and milks from multiple sources. Plos One. 8: e69371. PMID 23894461 DOI: 10.1371/journal.pone.0069371  0.01
2013 Guinane CM, Cotter PD. Role of the gut microbiota in health and chronic gastrointestinal disease: understanding a hidden metabolic organ. Therapeutic Advances in Gastroenterology. 6: 295-308. PMID 23814609 DOI: 10.1177/1756283X13482996  1
2013 Quigley L, O'Sullivan O, Stanton C, Beresford TP, Ross RP, Fitzgerald GF, Cotter PD. The complex microbiota of raw milk. Fems Microbiology Reviews. 37: 664-98. PMID 23808865 DOI: 10.1111/1574-6976.12030  1
2013 Clarke SF, Murphy EF, O'Sullivan O, Ross RP, O'Toole PW, Shanahan F, Cotter PD. Targeting the microbiota to address diet-induced obesity: a time dependent challenge. Plos One. 8: e65790. PMID 23762426 DOI: 10.1371/journal.pone.0065790  0.01
2013 Quigley L, McCarthy R, O'Sullivan O, Beresford TP, Fitzgerald GF, Ross RP, Stanton C, Cotter PD. The microbial content of raw and pasteurized cow milk as determined by molecular approaches. Journal of Dairy Science. 96: 4928-37. PMID 23746589 DOI: 10.3168/jds.2013-6688  1
2013 Schmalenberger A, O'Sullivan O, Gahan J, Cotter PD, Courtney R. Bacterial communities established in bauxite residues with different restoration histories. Environmental Science & Technology. 47: 7110-9. PMID 23745718 DOI: 10.1021/es401124w  0.01
2013 Phelan RW, Barret M, Cotter PD, O'Connor PM, Chen R, Morrissey JP, Dobson AD, O'Gara F, Barbosa TM. Subtilomycin: a new lantibiotic from Bacillus subtilis strain MMA7 isolated from the marine sponge Haliclona simulans. Marine Drugs. 11: 1878-98. PMID 23736764 DOI: 10.3390/md11061878  1
2013 Mathur H, O'Connor PM, Hill C, Cotter PD, Ross RP. Analysis of anti-Clostridium difficile activity of thuricin CD, vancomycin, metronidazole, ramoplanin, and actagardine, both singly and in paired combinations. Antimicrobial Agents and Chemotherapy. 57: 2882-6. PMID 23571539 DOI: 10.1128/AAC.00261-13  0.01
2013 Lapthorne S, Pereira-Fantini PM, Fouhy F, Wilson G, Thomas SL, Dellios NL, Scurr M, O'Sullivan O, Ross RP, Stanton C, Fitzgerald GF, Cotter PD, Bines JE. Gut microbial diversity is reduced and is associated with colonic inflammation in a piglet model of short bowel syndrome. Gut Microbes. 4: 212-21. PMID 23549027 DOI: 10.4161/gmic.24372  1
2013 Cotter PE, Martin PJ, Ring L, Warburton EA, Belham M, Pugh PJ. Incidence of atrial fibrillation detected by implantable loop recorders in unexplained stroke. Neurology. 80: 1546-50. PMID 23535493 DOI: 10.1212/WNL.0b013e31828f1828  0.01
2013 Molloy EM, Field D, O' Connor PM, Cotter PD, Hill C, Ross RP. Saturation mutagenesis of lysine 12 leads to the identification of derivatives of nisin A with enhanced antimicrobial activity. Plos One. 8: e58530. PMID 23505531 DOI: 10.1371/journal.pone.0058530  0.01
2013 Field D, Molloy EM, Iancu C, Draper LA, O' Connor PM, Cotter PD, Hill C, Ross RP. Saturation mutagenesis of selected residues of the α-peptide of the lantibiotic lacticin 3147 yields a derivative with enhanced antimicrobial activity. Microbial Biotechnology. 6: 564-75. PMID 23433070 DOI: 10.1111/1751-7915.12041  0.01
2013 Martinez FA, Balciunas EM, Converti A, Cotter PD, de Souza Oliveira RP. Bacteriocin production by Bifidobacterium spp. A review. Biotechnology Advances. 31: 482-8. PMID 23384878 DOI: 10.1016/j.biotechadv.2013.01.010  0.01
2013 Campion A, Casey PG, Field D, Cotter PD, Hill C, Ross RP. In vivo activity of nisin A and nisin V against Listeria monocytogenes in mice. Bmc Microbiology. 13: 23. PMID 23374279 DOI: 10.1186/1471-2180-13-23  0.01
2013 Barrett E, Guinane CM, Ryan CA, Dempsey EM, Murphy BP, O'Toole PW, Fitzgerald GF, Cotter PD, Ross RP, Stanton C. Microbiota diversity and stability of the preterm neonatal ileum and colon of two infants. Microbiologyopen. 2: 215-25. PMID 23349073 DOI: 10.1002/mbo3.64  1
2013 O'Sullivan DJ, Giblin L, McSweeney PL, Sheehan JJ, Cotter PD. Nucleic acid-based approaches to investigate microbial-related cheese quality defects. Frontiers in Microbiology. 4: 1. PMID 23346082 DOI: 10.3389/Fmicb.2013.00001  1
2013 Campos CG, Borst L, Cotter PA. Characterization of BcaA, a putative classical autotransporter protein in Burkholderia pseudomallei. Infection and Immunity. 81: 1121-8. PMID 23340315 DOI: 10.1128/Iai.01453-12  1
2013 O' Shea EF, Cotter PD, Ross RP, Hill C. Strategies to improve the bacteriocin protection provided by lactic acid bacteria. Current Opinion in Biotechnology. 24: 130-4. PMID 23337424 DOI: 10.1016/j.copbio.2012.12.003  0.01
2013 Guinane CM, Tadrous A, Fouhy F, Ryan CA, Dempsey EM, Murphy B, Andrews E, Cotter PD, Stanton C, Ross RP. Microbial composition of human appendices from patients following appendectomy. Mbio. 4. PMID 23322636 DOI: 10.1128/mBio.00366-12  0.01
2013 Barrett E, Kerr C, Murphy K, O'Sullivan O, Ryan CA, Dempsey EM, Murphy BP, O'Toole PW, Cotter PD, Fitzgerald GF, Ross RP, Stanton C. The individual-specific and diverse nature of the preterm infant microbiota. Archives of Disease in Childhood. Fetal and Neonatal Edition. 98: F334-40. PMID 23303303 DOI: 10.1136/archdischild-2012-303035  1
2013 Cotter PD, Ross RP, Hill C. Bacteriocins - a viable alternative to antibiotics? Nature Reviews. Microbiology. 11: 95-105. PMID 23268227 DOI: 10.1038/nrmicro2937  0.01
2013 Arnison PG, Bibb MJ, Bierbaum G, Bowers AA, Bugni TS, Bulaj G, Camarero JA, Campopiano DJ, Challis GL, Clardy J, Cotter PD, Craik DJ, Dawson M, Dittmann E, Donadio S, et al. Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature. Natural Product Reports. 30: 108-60. PMID 23165928 DOI: 10.1039/C2Np20085F  0.01
2013 Murphy EF, Clarke SF, Marques TM, Hill C, Stanton C, Ross RP, O'Doherty RM, Shanahan F, Cotter PD. Antimicrobials: Strategies for targeting obesity and metabolic health? Gut Microbes. 4: 48-53. PMID 23018760 DOI: 10.4161/gmic.22328  0.01
2013 DiRita VJ, Cotter PA. Bordetella and whooping cough Schaechter's Mechanisms of Microbial Disease: Fifth Edition. 228-234.  1
2013 DiRita VJ, Cotter PA. Bordetella and whooping cough Schaechter's Mechanisms of Microbial Disease: Fifth Edition. 228-234.  1
2012 Iancu C, Grainger A, Field D, Cotter PD, Hill C, Ross RP. Comparison of the Potency of the Lipid II Targeting Antimicrobials Nisin, Lacticin 3147 and Vancomycin Against Gram-Positive Bacteria. Probiotics and Antimicrobial Proteins. 4: 108-15. PMID 26781852 DOI: 10.1007/s12602-012-9095-x  0.01
2012 Prieto ML, O'Sullivan L, Tan SP, McLoughlin P, Hughes H, O'Connor PM, Cotter PD, Lawlor PG, Gardiner GE. Assessment of the bacteriocinogenic potential of marine bacteria reveals lichenicidin production by seaweed-derived Bacillus spp. Marine Drugs. 10: 2280-99. PMID 23170084 DOI: 10.3390/md10102280  1
2012 Field D, Begley M, O'Connor PM, Daly KM, Hugenholtz F, Cotter PD, Hill C, Ross RP. Bioengineered nisin A derivatives with enhanced activity against both Gram positive and Gram negative pathogens. Plos One. 7: e46884. PMID 23056510 DOI: 10.1371/journal.pone.0046884  1
2012 Fouhy F, Guinane CM, Hussey S, Wall R, Ryan CA, Dempsey EM, Murphy B, Ross RP, Fitzgerald GF, Stanton C, Cotter PD. High-throughput sequencing reveals the incomplete, short-term recovery of infant gut microbiota following parenteral antibiotic treatment with ampicillin and gentamicin. Antimicrobial Agents and Chemotherapy. 56: 5811-20. PMID 22948872 DOI: 10.1128/AAC.00789-12  1
2012 Cotter PD. Bioengineering: a bacteriocin perspective. Bioengineered. 3: 313-9. PMID 22922299 DOI: 10.4161/bioe.21601  1
2012 O' Shea EF, O' Connor PM, Raftis EJ, O' Toole PW, Stanton C, Cotter PD, Ross RP, Hill C. Subspecies diversity in bacteriocin production by intestinal Lactobacillus salivarius strains. Gut Microbes. 3: 468-73. PMID 22892690 DOI: 10.4161/gmic.21417  0.01
2012 Draper LA, Deegan LH, Hill C, Cotter PD, Ross RP. Insights into Lantibiotic Immunity Provided by Bioengineering of LtnI. Antimicrobial Agents and Chemotherapy. 56: 5122-33. PMID 22802258 DOI: 10.1128/AAC.00979-12  1
2012 Upton M, Cotter P, Tagg J. Antimicrobial peptides as therapeutic agents. International Journal of Microbiology. 2012: 326503. PMID 22778747 DOI: 10.1155/2012/326503  1
2012 Daly KM, Cotter PD, Hill C, Ross RP. Lantibiotic production by pathogenic microorganisms. Current Protein & Peptide Science. 13: 509-23. PMID 22708496 DOI: 10.2174/138920312803582997  1
2012 Quigley L, O'Sullivan O, Beresford TP, Ross RP, Fitzgerald GF, Cotter PD. High-throughput sequencing for detection of subpopulations of bacteria not previously associated with artisanal cheeses Applied and Environmental Microbiology. 78: 5717-5723. PMID 22685131 DOI: 10.1128/AEM.00918-12  1
2012 Cotter PE, Bhalla VK, Wallis SJ, Biram RWS. Predicting readmissions: Poor performance of the LACE index in an older UK population Age and Ageing. 41: 784-789. PMID 22644078 DOI: 10.1093/ageing/afs073  1
2012 Buzoianu SG, Walsh MC, Rea MC, O'Sullivan O, Crispie F, Cotter PD, Ross RP, Gardiner GE, Lawlor PG. The effect of feeding Bt MON810 maize to pigs for 110 days on intestinal microbiota. Plos One. 7: e33668. PMID 22574106 DOI: 10.1371/journal.pone.0033668  1
2012 Clarke SF, Murphy EF, Nilaweera K, Ross PR, Shanahan F, O'Toole PW, Cotter PD. The gut microbiota and its relationship to diet and obesity: new insights. Gut Microbes. 3: 186-202. PMID 22572830 DOI: 10.4161/gmic.20168  1
2012 Fouhy F, Ross RP, Fitzgerald GF, Stanton C, Cotter PD. Composition of the early intestinal microbiota: knowledge, knowledge gaps and the use of high-throughput sequencing to address these gaps. Gut Microbes. 3: 203-220. PMID 22572829  1
2012 Cotter PD, Stanton C, Ross RP, Hill C. The impact of antibiotics on the gut microbiota as revealed by high throughput DNA sequencing Discovery Medicine. 13: 193-199. PMID 22463795  1
2012 Cotter PF. The contrasting properties of 2 xenogenic erythrocyte-reactive natural antibodies in commercial ducks Poultry Science. 91: 653-659. PMID 22334740 DOI: 10.3382/ps.2011-01925  1
2012 Cotter PE, Belham M, Martin PJ. Towards understanding the cause of stroke in young adults utilising a new stroke classification system (A-S-C-O). Cerebrovascular Diseases (Basel, Switzerland). 33: 123-7. PMID 22179549 DOI: 10.1159/000334183  1
2012 Moore MW, Babu D, Cotter PD. Challenges in the codevelopment of companion diagnostics Personalized Medicine. 9: 485-496. DOI: 10.2217/pme.12.60  1
2012 Cotter PA. Genetic approaches to studying bacterial pathogenesis Schaechter's Mechanisms of Microbial Disease: Fifth Edition. 38-54.  1
2012 Moore MW, Cotter PD. Advancing personalized medicine: A seamless solution to discover & deliver novel diagnostic tests Drug Development and Delivery. 12: 66-68.  1
2012 Moore MW, Cotter PD. The Contract Diagnostics Organization: Revolutionizing Management for Co-Development of Companion Diagnostics Drug Development and Delivery. 12: 68-73.  1
2012 Cotter PET, Hapeshis PEL. Electrical Arc flash safety and risk management Aistech - Iron and Steel Technology Conference Proceedings. 2427-2431.  1
2011 Cotter PE, Martin PJ, Belham M. Toward understanding the atrial septum in cryptogenic stroke. International Journal of Stroke : Official Journal of the International Stroke Society. 6: 445-53. PMID 21951410 DOI: 10.1111/j.1747-4949.2011.00647.x  1
2011 Cotter P. Microbiology: Molecular syringes scratch the surface Nature. 475: 301-303. PMID 21776071 DOI: 10.1038/475301A  1
2011 Cotter PD. Small intestine and microbiota Current Opinion in Gastroenterology. 27: 99-105. PMID 21102323 DOI: 10.1097/MOG.0b013e328341dc67  1
2011 Cotter PE, O'Keeffe ST. Use of proton pump inhibitors is not associated with Vitamin B12 deficiency and in older hospital patients: A case control study European Geriatric Medicine. 2: 253-255. DOI: 10.1016/j.eurger.2011.02.007  1
2011 Liu L, Ross RP, Hill C, Cotter PD. Bacteriocins as Natural Antilisterial Food Preservatives Nonthermal Processing Technologies For Food. 428-461. DOI: 10.1002/9780470958360.ch29  1
2010 Jani AJ, Cotter PA. Type VI secretion: not just for pathogenesis anymore. Cell Host & Microbe. 8: 2-6. PMID 20638635 DOI: 10.1016/J.Chom.2010.06.012  1
2010 Cotter PE, Belham M, Martin PJ. Stroke in younger patients: The heart of the matter Journal of Neurology. 257: 1777-1787. PMID 20623300 DOI: 10.1007/s00415-010-5647-8  1
2010 Cotter PE, Martin PJ, Belham M. Improved Sensitivity of Transthoracic Contrast Echocardiography in the Detection of Right-to-Left Shunts Journal of the American Society of Echocardiography. 23: 578. PMID 20382000 DOI: 10.1016/j.echo.2010.03.014  1
2010 Cotter P. The path to extreme violence: Nazism and serial killers Frontiers in Behavioral Neuroscience. 3. DOI: 10.3389/neuro.08.061.2009  1
2009 Hulbert RR, Cotter PA. Laboratory Maintenance of Bordetella pertussis. Current Protocols in Microbiology. Unit 4B.1. PMID 19885941 DOI: 10.1002/9780471729259.Mc04B01S15  1
2009 Cotter PA, McLean E, Craig SR. Designing fish for improved human health status. Nutrition and Health. 20: 1-9. PMID 19326715  1
2009 Kelleher S, Cotter P. A descriptive study on emergency department doctors' and nurses' knowledge and attitudes concerning substance use and substance users International Emergency Nursing. 17: 3-14. PMID 19135010 DOI: 10.1016/j.ienj.2008.08.003  1
2009 Cotter PR. Alabama: Electoral continuity and racial voting A Paler Shade of Red: the 2008 Presidential Election in the South. 35-47.  1
2008 Williams CL, Haines R, Cotter PA. Serendipitous discovery of an immunoglobulin-binding autotransporter in Bordetella species. Infection and Immunity. 76: 2966-77. PMID 18426869 DOI: 10.1128/Iai.00323-08  1
2008 Cotter PA, Han AJ, Everson JJ, Rodnick KJ. Cardiac hemodynamics of the rainbow trout (Oncorhynchus mykiss) using simultaneous Doppler echocardiography and electrocardiography. Journal of Experimental Zoology. Part a, Ecological Genetics and Physiology. 309: 243-54. PMID 18366108 DOI: 10.1002/jez.453  1
2008 Cotter PA, Craig SR, Mclean E. Hyperaccumulation of selenium in hybrid striped bass: A functional food for aquaculture? Aquaculture Nutrition. 14: 215-222. DOI: 10.1111/j.1365-2095.2007.00520.x  1
2008 Smyth B, Cotter P, Oman S. Intelligent content discovery on the mobile internet: Experiences and lessons learned Ai Magazine. 29: 29-40.  1
2008 Sasaki Y, Thompson P, Cotter P, McNaught J, Ananiadou S. Event frame extraction based on a gene regulation corpus Coling 2008 - 22nd International Conference On Computational Linguistics, Proceedings of the Conference. 1: 761-768.  1
2007 Mazar J, Cotter PA. New insight into the molecular mechanisms of two-partner secretion. Trends in Microbiology. 15: 508-15. PMID 17988872 DOI: 10.1016/J.Tim.2007.10.005  1
2007 Cotter PE, O'Keeffe ST. After Leas-Cross: Is now the time for restraint? Irish Medical Journal. 100. PMID 17727117  1
2007 Cotter PA, Rodnick KJ. Fishing for an ECG: a student-directed electrocardiographic laboratory using rainbow trout. Advances in Physiology Education. 31: 211-7. PMID 17562913 DOI: 10.1152/advan.00096.2006  1
2007 Cotter PE, O'Keeffe ST. Improvement in neuroleptic-induced akathisia with intravenous iron treatment in a patient with iron deficiency [5] Journal of Neurology, Neurosurgery and Psychiatry. 78: 548. PMID 17435196 DOI: 10.1136/jnnp.2006.101014  1
2007 Cotter PA, Stibitz S. c-di-GMP-mediated regulation of virulence and biofilm formation. Current Opinion in Microbiology. 10: 17-23. PMID 17208514 DOI: 10.1016/J.Mib.2006.12.006  1
2007 Williams CL, Cotter PA. Autoregulation is essential for precise temporal and steady-state regulation by the Bordetella BvgAS phosphorelay. Journal of Bacteriology. 189: 1974-82. PMID 17158656 DOI: 10.1128/Jb.01684-06  1
2007 Church K, Smyth B, Cotter P, Bradley K. Mobile information access: A study of emerging search behavior on the mobile Internet Acm Transactions On the Web. 1. DOI: 10.1145/1232722.1232726  1
2007 Smyth B, Cotter P, Oman S. Enabling intelligent content discovery on the mobile internet Proceedings of the National Conference On Artificial Intelligence. 2: 1744-1751.  1
2006 Mazar J, Cotter PA. Topology and maturation of filamentous haemagglutinin suggest a new model for two-partner secretion. Molecular Microbiology. 62: 641-54. PMID 16999837 DOI: 10.1111/J.1365-2958.2006.05392.X  1
2006 Cotter PA, Rodnick KJ. Differential effects of anesthetics on electrical properties of the rainbow trout (Oncorhynchus mykiss) heart. Comparative Biochemistry and Physiology. Part a, Molecular & Integrative Physiology. 145: 158-65. PMID 16905348 DOI: 10.1016/j.cbpa.2006.06.001  1
2006 Cotter PF, Van Eerden E. Salmonella challenge affects the antibody isotype profile of bile in hens differing in metabolic efficiency Poultry Science. 85: 861-865. PMID 16673763  1
2006 Cotter PF, Van Eerden E. Natural anti-Gal and Salmonella-specific antibodies in bile and plasma of hens differing in diet efficiency Poultry Science. 85: 435-440. PMID 16553272  1
2006 Glass IA, Li L, Cotter PD. Double aneuploidy (48,XXY,+21): molecular analysis demonstrates a maternal origin European Journal of Medical Genetics. 49: 346-348. PMID 16461030 DOI: 10.1016/j.ejmg.2005.12.005  1
2006 Cotter PE, O'Keeffe ST. Restless leg syndrome: Is it a real problem? Therapeutics and Clinical Risk Management. 2: 465-475. DOI: 10.2147/tcrm.2006.2.4.465  1
2005 Cotter P, Maher P. Why the silence on indigenous health? The Australian Journal of Physiotherapy. 51: 211-2. PMID 16321127  1
2005 Cotter PD, Norton ME. Y chromosome heterochromatin variation detected at prenatal diagnosis [3] Prenatal Diagnosis. 25: 1062-1063. PMID 16299832 DOI: 10.1002/pd.1280  1
2005 Cotter PD, Hill C, Ross RP. Food microbiology: Bacteriocins: Developing innate immunity for food Nature Reviews Microbiology. 3: 777-788. PMID 16205711 DOI: 10.1038/nrmicro1273  1
2005 Julio SM, Cotter PA. Characterization of the filamentous hemagglutinin-like protein FhaS in Bordetella bronchiseptica. Infection and Immunity. 73: 4960-71. PMID 16041011 DOI: 10.1128/Iai.73.8.4960-4971.2005  1
2005 Cotter P. A tribute: The contribution of the Otago University Medical School and its students in World War 1 New Zealand Medical Journal. 118. PMID 15843835  1
2005 Cotter PZ, Goolsby HA, Prien SD. Preliminary evaluation of a unique freezing technology for bovine spermatozoa cryopreservation Reproduction in Domestic Animals. 40: 98-99. PMID 15819955 DOI: 10.1111/j.1439-0531.2004.00540.x  1
2005 Cotter PF, Ayoub J, Parmentier HK. Directional selection for specific sheep cell antibody responses affects natural rabbit agglutinins of chickens Poultry Science. 84: 220-225. PMID 15742957  1
2005 Cotter PD, Hill C, Ross RP. Bacterial lantibiotics: Strategies to improve therapeutic potential Current Protein and Peptide Science. 6: 61-75. PMID 15638769 DOI: 10.2174/1389203053027584  1
2005 Johnson VE, Moosman A, Cotter P. A hierarchical model for estimating the early reliability of complex systems Ieee Transactions On Reliability. 54: 224-231. DOI: 10.1109/Tr.2005.847262  1
2004 Abrams L, Cotter PD. Prenatal diagnosis of de novo X;autosome translocations. Clinical Genetics. 65: 423-8. PMID 15099352 DOI: 10.1111/j.0009-9163.2004.00255.x  1
2004 Cotter PR, Fisher SH. A growing divide: Issue opinions of Southern Party Activists Southern Political Party Activists: Patterns of Conflict and Change, 1991-2001. 59-72.  1
2003 Cotter PD, Hill C. Surviving the acid test: Responses of gram-positive bacteria to low pH Microbiology and Molecular Biology Reviews. 67: 429-453. PMID 12966143 DOI: 10.1128/MMBR.67.3.429-453.2003  1
2003 Cotter PA, Jones AM. Phosphorelay control of virulence gene expression in Bordetella. Trends in Microbiology. 11: 367-73. PMID 12915094 DOI: 10.1016/S0966-842X(03)00156-2  1
2003 Fuchslocher B, Millar LL, Cotter PA. Comparison of bipA alleles within and across Bordetella species. Infection and Immunity. 71: 3043-52. PMID 12761081 DOI: 10.1128/Iai.71.6.3043-3052.2003  1
2003 Rauen KA, Golabi M, Cotter PD. Fertility in a female with mosaic trisomy 8 Fertility and Sterility. 79: 206-208. PMID 12524090 DOI: 10.1016/S0015-0282(02)04410-2  1
2003 Rauen KA, Cotter PD. Cardio-facio-cutaneous syndrome phenotype and del(12q) [5] American Journal of Medical Genetics. 116: 411-412. PMID 12522803  1
2003 Cotter PD, Hill C, Ross RP. A food-grade approach for functional analysis and modification of native plasmids in Lactococcus lactis Applied and Environmental Microbiology. 69: 702-706. PMID 12514066 DOI: 10.1128/AEM.69.1.702-706.2003  1
2002 Cotter PD, Guinane CM, Hill C. The LisRK signal transduction system determines the sensitivity of Listeria monocytogenes to nisin and cephalosporins Antimicrobial Agents and Chemotherapy. 46: 2784-2790. PMID 12183229 DOI: 10.1128/AAC.46.9.2784-2790.2002  1
2002 Cotter PA, Mulligan OF, Landau S, Papadopoulos A, Lightman SL, Checkley SA. Vasoconstrictor response to topical beclomethasone in major depression. Psychoneuroendocrinology. 27: 475-87. PMID 11912000 DOI: 10.1016/S0306-4530(01)00065-8  1
2002 Cotter PJ, Caffrey DR, Shields DC. Improved database searches for orthologous sequences by conditioning on outgroup sequences. Bioinformatics (Oxford, England). 18: 83-91. PMID 11836215 DOI: 10.1093/Bioinformatics/18.1.83  1
2002 Smyth B, Cotter P. The plight of the navigator: Solving the navigation problem for wireless portals Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2347: 328-337.  1
2001 Cotter PD, O'Reilly K, Hill C. Role of the glutamate decarboxylase acid resistance system in the survival of Listeria monocytogenes LO28 in low pH foods Journal of Food Protection. 64: 1362-1368. PMID 11563513  1
2001 Rauen KA, Cotter PD. Candidate region for cardio-facio-cutaneous syndrome [1] American Journal of Medical Genetics. 101: 173. PMID 11391663 DOI: 10.1002/ajmg.1251  1
2001 Cotter PD, Musci TJ. Interphase FISH with chromosome-specific protelomere probes for rapid prenatal diagnosis in a reciprocal translocation carrier Prenatal Diagnosis. 21: 171-175. PMID 11260602 DOI: 10.1002/1097-0223(200103)21:3<171::AID-PD24>3.0.CO;2-4  1
2001 Smyth B, Cotter P. Personalized electronic program guides for digital TV Ai Magazine. 22: 89-98. DOI: 10.1609/Aimag.V22I2.1563  1
2000 Skinner LJ, O'Donnell MJ, Kelly J, Cotter P. Causes of the acute abdomen: Add thrombophilia to your list Hospital Medicine. 61: 740-741. PMID 11103291  1
2000 Cotter PF. Analysis of chicken bile by gel precipitation reactions using a lectin in the place of antibody Poultry Science. 79: 1276-1281. PMID 11020072  1
2000 Cotter PA, Dirita VJ. Bacterial virulence gene regulation: An evolutionary perspective Annual Review of Microbiology. 54: 519-565. PMID 11018137 DOI: 10.1146/Annurev.Micro.54.1.519  1
2000 Cotter PA, Miller JF. Genetic analysis of the Bordetella infectious cycle Immunopharmacology. 48: 253-255. PMID 10960665 DOI: 10.1016/S0162-3109(00)00237-X  1
2000 Mattoo S, Miller JF, Cotter PA. Role of Bordetella bronchiseptica fimbriae in tracheal colonization and development of a humoral immune response. Infection and Immunity. 68: 2024-33. PMID 10722598 DOI: 10.1128/Iai.68.4.2024-2033.2000  1
2000 Smyth B, Cotter P. A Personalized television listings service Communications of the Acm. 43: 107-111. DOI: 10.1145/345124.345161  1
2000 Smyth B, Cotter P. Personalized TV listings service for the digital TV age Knowledge-Based Systems. 13: 53-59. DOI: 10.1016/S0950-7051(00)00046-0  1
2000 Cotter PA, Andres BA. Nest density of shorebirds inland from the Beaufort Sea Coast, Alaska Canadian Field-Naturalist. 114: 287-291.  1
1999 Kumari V, Cotter PA, Mulligan OF, Checkley SA, Gray NS, Hemsley DR, Thornton JC, Corr PJ, Toone BK, Gray JA. Effects of d-amphetamine and haloperidol on latent inhibition in healthy male volunteers. Journal of Psychopharmacology (Oxford, England). 13: 398-405. PMID 10667617 DOI: 10.1177/026988119901300411  1
1999 Smyth B, Cotter P. Surfing the digital wave generating personalised TV listings using collaborative, case-based recommendation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1650: 561-571. DOI: 10.1007/3-540-48508-2_41  1
1998 Cotter PA, Miller JF. In vivo and ex vivo regulation of bacterial virulence gene expression Current Opinion in Microbiology. 1: 17-26. PMID 10066465 DOI: 10.1016/S1369-5274(98)80138-0  1
1998 Cotter PF, Taylor RL, Abplanalp H. B-complex associated immunity to Salmonella enteritidis challenge in congenic chickens. Poultry Science. 77: 1846-51. PMID 9872588  1
1998 Kumari V, Mulligan OF, Cotter PA, Poon L, Toone BK, Checkley SA, Gray JA. Effects of single oral administrations of haloperidol and d-amphetamine on prepulse inhibition of the acoustic startle reflex in healthy male volunteers. Behavioural Pharmacology. 9: 567-76. PMID 9862082 DOI: 10.1097/00008877-199811000-00012  1
1998 Cotter PD, Hirschhorn K. Chimerism detected by an unbalanced chromosome translocation: an alternative hypothesis Clinical Genetics. 53: 230. PMID 9630083  1
1998 Cotter PA. Sexual abuse is not the only childhood adversity that may lead to later depression [4] British Medical Journal. 316: 1244. PMID 9553014  1
1997 Cotter PA, Melville SB, Albrecht JA, Gunsalus RP. Aerobic regulation of cytochrome d oxidase (cydAB) operon expression in Escherichia coli: Roles of Fnr and Arca in repression and activation Molecular Microbiology. 25: 605-615. PMID 9302022 DOI: 10.1046/J.1365-2958.1997.5031860.X  1
1997 Kumari V, Cotter PA, Checkley SA, Gray JA. Effect of acute subcutaneous nicotine on prepulse inhibition of the acoustic startle reflex in healthy male non-smokers. Psychopharmacology. 132: 389-95. PMID 9298517 DOI: 10.1007/s002130050360  1
1997 Cotter PA, Miller JF. A mutation in the Bordetella bronchiseptica bvgS gene results in reduced virulence and increased resistance to starvation, and identifies a new class of Bvg-regulated antigens Molecular Microbiology. 24: 671-685. PMID 9194696 DOI: 10.1046/J.1365-2958.1997.3821741.X  1
1997 Davies JP, Cotter PD, Ioannou YA. Cloning and mapping of human Rab7 and Rab9 cDNA sequences and identification of a Rab9 pseudogene Genomics. 41: 131-134. PMID 9126495 DOI: 10.1006/Geno.1997.4644  1
1997 Kumari V, Corr PJ, Mulligan OF, Cotter PA, Checkley SA, Gray JA. Effects of acute administration of d-amphetamine and haloperidol on procedural learning in man. Psychopharmacology. 129: 271-6. PMID 9084066 DOI: 10.1007/s002130050190  1
1997 Davidson WB, Cotter PR. Psychological sense of community and newspaper readership Psychological Reports. 80: 659-665. DOI: 10.2466/Pr0.1997.80.2.659  1
1997 Gallagher DP, Cotter PF, Mulvihill DM. Porcine milk proteins: A review International Dairy Journal. 7: 99-118. DOI: 10.1016/S0958-6946(96)00056-8  1
1997 Cotter PA. Salbutamol inhaler abuse and psychosis Irish Journal of Psychological Medicine. 14: 76-77.  1
1996 Cotter PA, Miller JF. Genetic analysis of the Bordetella-host interaction Annals of the New York Academy of Sciences. 797: 65-76. PMID 8993352 DOI: 10.1111/J.1749-6632.1996.Tb52950.X  1
1996 Cotter PA, Raven PW. Cytochromes and psychotropic drug interactions [3] British Journal of Psychiatry. 169: 381-382. PMID 8879731  1
1996 Kumari V, Cotter P, Corr PJ, Gray JA, Checkley SA. Effect of clonidine on the human acoustic startle reflex. Psychopharmacology. 123: 353-60. PMID 8867875 DOI: 10.1007/BF02246646  1
1996 Cotter PA, Miller JF. Triggering bacterial virulence Science. 273: 1183-1184. PMID 8787124 DOI: 10.1126/Science.273.5279.1183  1
1996 Sayal K, Cotter PA. Late-onset liver abnormalities associated with long-term lofepramine treatment Irish Journal of Psychological Medicine. 13: 124.  1
1996 Cotter PA, Raven PW, Hudson M. Asymptomatic tricyclic toxicity associated with diltiazem Irish Journal of Psychological Medicine. 13: 168-169.  1
1995 Park SJ, Cotter PA, Gunsalus RP. Regulation of malate dehydrogenase (mdh) gene expression in Escherichia coli in response to oxygen, carbon, and heme availability Journal of Bacteriology. 177: 6652-6656. PMID 7592446 DOI: 10.1128/Jb.177.22.6652-6656.1995  1
1994 Condon C, Cotter P, Lyons JF. Localized linear IgA disease and platelet abnormalities [6] British Journal of Dermatology. 131: 139-141. PMID 8043411 DOI: 10.1111/j.1365-2133.1994.tb08476.x  1
1994 Cotter PA, Miller JF. BvgAS-mediated signal transduction: Analysis of phase-locked regulatory mutants of Bordetella bronchiseptica in a rabbit model Infection and Immunity. 62: 3381-3390. PMID 8039908 DOI: 10.1128/Iai.62.8.3381-3390.1994  1
1994 Tseng CP, Hansen AK, Cotter P, Gunsalus RP. Effect of cell growth rate on expression of the anaerobic respiratory pathway operons frdABCD, dmsABC, and narGHJI of Escherichia coli Journal of Bacteriology. 176: 6599-6605. PMID 7961411 DOI: 10.1128/Jb.176.21.6599-6605.1994  1
1993 Reardon M, Cotter P, Kealy WF, Duggan PF. Gaucher's disease with haematological complications Irish Medical Journal. 86: 39-40. PMID 8444599  1
1993 Deviche P, Cotter P, Gulledge CC. Identification, partial characterization, and hypothalamic distribution of kappa, mu, and delta opioid receptors in a passerine songbird (Junco hyemalis). Brain Research. 614: 220-6. PMID 8394186 DOI: 10.1016/0006-8993(93)91038-T  1
1993 Reardon M, Duane A, Cotter P. Attempted homicide in hospital Irish Journal of Medical Science. 162: 315-317. PMID 8244654 DOI: 10.1007/BF02960728  1
1993 Cotter PD, Tumewu P, Browett PJ. Deletion of the long arm of chromosome 20 in a patient with small cell lymphocytic lymphoma Cancer Genetics and Cytogenetics. 70: 142-143. PMID 7694789 DOI: 10.1016/0165-4608(93)90186-P  1
1993 Davidson WB, Cotter PR. Psychological sense of community and support for public school taxes American Journal of Community Psychology. 21: 59-66. DOI: 10.1007/Bf00938207  1
1992 Cotter PD, Baumann M, Bishop DF. Enzymatic defect in "X-linked" sideroblastic anemia: Molecular evidence for erythroid o-aminolevulinate synthase deficiency Proceedings of the National Academy of Sciences of the United States of America. 89: 4028-4032. PMID 1570328  1
1992 Cotter PA, Darie S, Gunsalus RP. The effect of iron limitation on expression of the aerobic and anaerobic electron transport pathway genes in Escherichia coli Fems Microbiology Letters. 100: 227-232. PMID 1478458 DOI: 10.1111/J.1574-6968.1992.Tb14045.X  1
1992 Cotter PF, Taylor RL, Abplanalp H. Differential resistance to Staphylococcus aureus challenge in major histocompatibility (B) complex congenic lines Poultry Science. 71: 1873-1878. PMID 1437973  1
1992 Cotter PA, Gunsalus RP. Contribution of the fnr and arcA gene products in coordinate regulation of cytochrome o and d oxidase (cyoABCDE and cydAB) genes in Escherichia coli Fems Microbiology Letters. 91: 31-36. PMID 1315704 DOI: 10.1016/0378-1097(92)90558-6  1
1992 Stovall JG, Cotter PR. The Public Plays Reporter: Attitudes toward Reporting on Public Officials Journal of Mass Media Ethics. 7: 97-106. DOI: 10.1207/S15327728Jmme0702_3  1
1992 Lyons JF, Cotter P. Linear IgA deposition in association with abnormal platelet function British Journal of Dermatology. 127: 66.  1
1991 Cotter PF, Taylor RL. Differential resistance to Staphylococcus aureus challenge in two related lines of chickens Poultry Science. 70: 1357-1361. PMID 1886844  1
1990 Cotter PA, Chepuri V, Gennis RB, Gunsalus RP. Cytochrome o (cyoABCDE) and d (cydAB) oxidase gene expression in Escherichia coli is regulated by oxygen, pH and the fnr gene product Journal of Bacteriology. 172: 6333-6338. PMID 2172211 DOI: 10.1128/Jb.172.11.6333-6338.1990  1
1990 Cotter PD, Stewart NL. Partial trisomy 17q and monosomy 9p due to a familial translocation Annales De Genetique. 33: 231-233. PMID 1710432  1
1990 Cotter PR, Stovall JG. The conservative south? American Politics Research. 18: 103-119. DOI: 10.1177/1532673X9001800106  1
1989 Cotter PA, Gunsalus RP. Oxygen, nitrate, and molybdenum regulation of dmsABC gene expression in Escherichia coli Journal of Bacteriology. 171: 3817-3823. PMID 2544558 DOI: 10.1128/Jb.171.7.3817-3823.1989  1
1989 Willke RJ, Cotter PS. Young physicians and changes in medical practice characteristics between 1975 and 1987 Inquiry. 26: 84-99. PMID 2523349  1
1988 Rankin D, Cotter P. Hospital smoking policies in Victoria. 1987 Australian Health Review : a Publication of the Australian Hospital Association. 11: 48-56. PMID 10287009  1
1988 Cotter P, Burk GJ. The safety of Midazolam (Lyprovel) for, and findings at, upper G.I. endoscopy in patients over 75 years Irish Journal of Medical Science. 157: 208.  1
1987 Cotter PF, Wing T. Kinetics of the wattle reaction to human plasma Avian Diseases. 31: 643-648. PMID 3675430  1
1987 Cotter PB. Scintillating scotornas relieved with topical timolol American Journal of Ophthalmology. 104: 432. PMID 3661658  1
1987 Cotter PR, Stovall JG. The 1986 election in alabama: The beginning of the post-wallace era Ps: Political Science &Amp; Politics. 20: 655-665. DOI: 10.1017/S1049096500026706  1
1986 O'Donnell L, Cotter P, Kennedy N, Clancy L. An open steady-state pharmacokinetic study to compare Pro-Vent and Phyllocontin in asthmatic patients British Journal of Clinical Practice. 40: 318-322. PMID 3741751  1
1985 Coyne JD, Lynch T, Cotter P, Kealy WF, Duggan PF. Gaucher's disease: A case report with coincidental vitamin B12 deficiency anaemia Irish Medical Journal. 78: 254-255. PMID 4055326  1
1985 O'Donnell D, Kelly CP, Cotter P, Clancy L. Use of oxygen driven nebulizer delivery systems for beta -2 agonists in chronic bronchitis Irish Journal of Medical Science. 154: 198-200. PMID 4030280 DOI: 10.1007/BF02937361  1
1985 Cotter PF, Wing T, Swanson J. The delayed and saline wattle reactions in broilers challenged with bovine serum albumin Poultry Science. 64: 1293-1295. PMID 4022903  1
1985 Fowler JF, Callen JP, Stelzer GT, Cotter PK. Human histocompatibility antigen associations in patients with chronic cutaneous lupus erythematosus Journal of the American Academy of Dermatology. 12: 73-77. PMID 3856581  1
1985 Cotter PR. The decline in partisanship: A Test of Four Explanations American Politics Research. 13: 51-77. DOI: 10.1177/1532673X8501300103  1
1985 Latimer MK, Cotter PR. Effects of News Measure on Selection of State Government News Sources Journalism &Amp; Mass Communication Quarterly. 62: 31-36. DOI: 10.1177/107769908506200105  1
1982 Cotter PR. Public attitudes toward health care in Alabama Journal of the Medical Association of the State of Alabama. 52: 6-20. PMID 7142849  1
1982 Cotter PB, Weiter JJ. Retinopathy in a patient with systemic lupus erythematosus. Annals of Ophthalmology. 14: 470-3. PMID 7114678  1
1982 Davidson WB, Cotter PR. Adjustment to aging and relationships with offspring Psychological Reports. 50: 731-738. PMID 7111540 DOI: 10.2466/Pr0.1982.50.3.731  1
1982 Cotter PR, Cohen J, Coulter PB. Race-of-interviewer effects in telephone interviews Public Opinion Quarterly. 46: 278-284. DOI: 10.1086/268719  1
1982 Cotter PJ. Barbados' new marine reserve ( Holetown) Parks. 7: 8-11.  1
1981 Molloy W, Murphy C, Fahy G, Cotter P, Molloy M. Polyarteritis nodosa and acute myeloid leukaemia Irish Journal of Medical Science. 150: 158-159. PMID 6114938 DOI: 10.1007/BF02938223  1
1981 Cotter PR. SOURCES OF ERROR IN CHILDREN'S REPORTS OF PARENT'S CHARACTERISTICS Southeastern Political Review. 9: 133-146. DOI: 10.1111/J.1747-1346.1981.Tb00018.X  1
1979 Obeid D, Cotter P, Sturdee DW. Acute leukaemia relapse presenting as ovarian tumour British Journal of Obstetrics and Gynaecology. 86: 578-580. PMID 289410  1
1978 Cotter P, Davidson WB. Influence of social services on well-being among the aged. Evaluation and Program Planning. 1: 159-60. PMID 10237435 DOI: 10.1016/0149-7189(78)90036-8  1
1978 Obeid D, Cotter P. Plasmapheresis British Medical Journal. 1: 1486-1487. PMID 647354 DOI: 10.1136/bmj.1.6125.1486-e  1
1978 Obeid D, Cotter P. Razoxane in treatment of acute myeloid leukaemia British Medical Journal. 2: 1161. DOI: 10.1136/bmj.2.6145.1161-a  1
1978 Cotter PR. Recruitment, teaching, and students’ image of politics Teaching Political Science. 6: 49-65. DOI: 10.1080/00922013.1978.11000150  1
1974 Ochocki T, Cotter P, Miller FD. Verbal reinforcement combinations, task complexity, and overtraining on discrimination reversal learning in children Journal of General Psychology. 90: 231-236. DOI: 10.1080/00221309.1974.9920760  1
1971 Cotter PW. Alcohol and driving New Zealand Medical Journal. 74: 209-210. PMID 5289862  1
1969 Callaghan N, Mitchell R, Cotter P. The relationship of serum folic acid and vitamin B 12 levels to psychosis in epilepsy Irish Journal of Medical Science. 2: 497-505. PMID 4905425 DOI: 10.1007/BF02958622  1
1965 Cotter P. So what's a physician? L" Infirmiere Canadienne. 61: 773. PMID 5174926  1
1965 Cotter P. What Is A Doctor? Aorn Journal. 3: 130. DOI: 10.1016/S0001-2092(08)70522-2  1
1962 COTTER PW, MORRIS JB. Acute streptococcal gangrene. Report of a case The Journal of Bone and Joint Surgery. British Volume. 44: 891-895. PMID 14041405  1
1954 COTTER PG, KOHN JA. Industrial Diamond Substitutes: I, Physical and X‐Ray Study of Hafnium Carbide Journal of the American Ceramic Society. 37: 415-420. DOI: 10.1111/j.1151-2916.1954.tb14060.x  1
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