Charalampos G. Kalodimos - Publications

Affiliations: 
Graduate School - New Brunswick Rutgers University, New Brunswick, New Brunswick, NJ, United States 
Area:
Biochemistry

61 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Jiang Y, Rossi P, Kalodimos CG. Structural basis for client recognition and activity of Hsp40 chaperones. Science (New York, N.Y.). 365: 1313-1319. PMID 31604242 DOI: 10.1126/science.aax1280  0.52
2019 Rossi P, Monneau YR, Xia Y, Ishida Y, Kalodimos CG. Toolkit for NMR Studies of Methyl-Labeled Proteins. Methods in Enzymology. 614: 107-142. PMID 30611422 DOI: 10.1016/bs.mie.2018.08.036  0.52
2018 Xing Q, Shi K, Portaliou A, Rossi P, Economou A, Kalodimos CG. Structures of chaperone-substrate complexes docked onto the export gate in a type III secretion system. Nature Communications. 9: 1773. PMID 29720631 DOI: 10.1038/s41467-018-04137-4  0.52
2018 Jiang Y, Kalodimos CG. Confirmation for conformational selection. Elife. 7. PMID 29460777 DOI: 10.7554/eLife.34923  0.48
2017 Xia Y, Rossi P, Subrahmanian MV, Huang C, Saleh T, Olivieri C, Kalodimos CG, Veglia G. Enhancing the sensitivity of multidimensional NMR experiments by using triply-compensated π pulses. Journal of Biomolecular Nmr. PMID 29164453 DOI: 10.1007/s10858-017-0153-2  1
2017 Portaliou AG, Tsolis KC, Loos MS, Balabanidou V, Rayo J, Tsirigotaki A, Crepin VF, Frankel G, Kalodimos CG, Karamanou S, Economou A. Hierarchical protein targeting and secretion is controlled by an affinity switch in the type III secretion system of enteropathogenic Escherichia coli. The Embo Journal. PMID 29109154 DOI: 10.15252/embj.201797515  0.44
2017 Monneau YR, Rossi P, Bhaumik A, Huang C, Jiang Y, Saleh T, Xie T, Xing Q, Kalodimos CG. Automatic methyl assignment in large proteins by the MAGIC algorithm. Journal of Biomolecular Nmr. PMID 29098507 DOI: 10.1007/s10858-017-0149-y  1
2017 Saleh T, Rossi P, Kalodimos CG. Atomic view of the energy landscape in the allosteric regulation of Abl kinase. Nature Structural & Molecular Biology. PMID 28945248 DOI: 10.1038/nsmb.3470  1
2017 Xia Y, Rossi P, Tonelli M, Huang C, Kalodimos CG, Veglia G. Optimization of (1)H decoupling eliminates sideband artifacts in 3D TROSY-based triple resonance experiments. Journal of Biomolecular Nmr. PMID 28887770 DOI: 10.1007/s10858-017-0133-6  0.52
2017 Jiang Y, Kalodimos CG. NMR studies of large proteins. Journal of Molecular Biology. PMID 28728982 DOI: 10.1016/j.jmb.2017.07.007  0.48
2017 Chatzi KE, Sardis MF, Tsirigotaki A, Koukaki M, Šoštarić N, Konijnenberg A, Sobott F, Kalodimos CG, Karamanou S, Economou A. Preprotein mature domains contain translocase targeting signals that are essential for secretion. The Journal of Cell Biology. PMID 28404644 DOI: 10.1083/jcb.201609022  0.44
2017 Huang C, Kalodimos CG. Structures of Large Protein Complexes Determined by Nuclear Magnetic Resonance Spectroscopy. Annual Review of Biophysics. PMID 28375736 DOI: 10.1146/annurev-biophys-070816-033701  0.44
2017 Saleh T, Kalodimos CG. Enzymes at work are enzymes in motion. Science (New York, N.Y.). 355: 247-248. PMID 28104853 DOI: 10.1126/science.aal4632  1
2016 Rossi P, Xia Y, Khanra N, Veglia G, Kalodimos CG. (15)N and (13)C- SOFAST-HMQC editing enhances 3D-NOESY sensitivity in highly deuterated, selectively [(1)H,(13)C]-labeled proteins. Journal of Biomolecular Nmr. PMID 27878649 DOI: 10.1007/s10858-016-0074-5  0.52
2016 Khanra N, Rossi P, Economou A, Kalodimos CG. Recognition and targeting mechanisms by chaperones in flagellum assembly and operation. Proceedings of the National Academy of Sciences of the United States of America. PMID 27528687 DOI: 10.1073/pnas.1607845113  1
2016 Huang C, Rossi P, Saio T, Kalodimos CG. Structural basis for the antifolding activity of a molecular chaperone. Nature. PMID 27501151 DOI: 10.1038/nature18965  1
2016 Monneau YR, Ishida Y, Rossi P, Saio T, Tzeng SR, Inouye M, Kalodimos CG. Exploiting E. coli auxotrophs for leucine, valine, and threonine specific methyl labeling of large proteins for NMR applications. Journal of Biomolecular Nmr. PMID 27255761 DOI: 10.1007/s10858-016-0041-1  1
2015 Tzeng SR, Kalodimos CG. The role of slow and fast protein motions in allosteric interactions. Biophysical Reviews. 7: 251-255. PMID 28510174 DOI: 10.1007/s12551-015-0172-8  0.56
2015 Saleh T, Jankowski W, Sriram G, Rossi P, Shah S, Lee KB, Cruz LA, Rodriguez AJ, Birge RB, Kalodimos CG. Cyclophilin A promotes cell migration via the Abl-Crk signaling pathway. Nature Chemical Biology. PMID 26656091 DOI: 10.1038/nchembio.1981  1
2015 Xie T, Kalodimos CG. NMR illuminates the pathways to ALS. Elife. 4. PMID 26099301 DOI: 10.7554/eLife.08679  1
2015 Tzeng SR, Kalodimos CG. The role of slow and fast protein motions in allosteric interactions Biophysical Reviews. 7: 251-255. DOI: 10.1007/s12551-015-0172-8  1
2014 Sriram G, Jankowski W, Kasikara C, Reichman C, Saleh T, Nguyen KQ, Li J, Hornbeck P, Machida K, Liu T, Li H, Kalodimos CG, Birge RB. Iterative tyrosine phosphorylation controls non-canonical domain utilization in Crk. Oncogene. PMID 25381819 DOI: 10.1038/onc.2014.361  1
2014 Saio T, Guan X, Rossi P, Economou A, Kalodimos CG. Structural basis for protein antiaggregation activity of the trigger factor chaperone. Science (New York, N.Y.). 344: 1250494. PMID 24812405 DOI: 10.1126/science.1250494  1
2013 Tinberg CE, Khare SD, Dou J, Doyle L, Nelson JW, Schena A, Jankowski W, Kalodimos CG, Johnsson K, Stoddard BL, Baker D. Computational design of ligand-binding proteins with high affinity and selectivity. Nature. 501: 212-6. PMID 24005320 DOI: 10.1038/nature12443  1
2013 Tzeng SR, Kalodimos CG. Allosteric inhibition through suppression of transient conformational states. Nature Chemical Biology. 9: 462-5. PMID 23644478 DOI: 10.1038/nchembio.1250  1
2013 Saio T, Kalodimos CG. NMR disentangles a dynamic disaggregase machinery. Nature Structural & Molecular Biology. 20: 409-10. PMID 23552291 DOI: 10.1038/nsmb.2551  1
2013 Chen L, Ai X, Portaliou AG, Minetti CA, Remeta DP, Economou A, Kalodimos CG. Substrate-activated conformational switch on chaperones encodes a targeting signal in type III secretion. Cell Reports. 3: 709-15. PMID 23523349 DOI: 10.1016/j.celrep.2013.02.025  1
2012 Tzeng SR, Kalodimos CG. Protein activity regulation by conformational entropy. Nature. 488: 236-40. PMID 22801505 DOI: 10.1038/nature11271  1
2012 Jankowski W, Saleh T, Pai MT, Sriram G, Birge RB, Kalodimos CG. Domain organization differences explain Bcr-Abl's preference for CrkL over CrkII. Nature Chemical Biology. 8: 590-6. PMID 22581121 DOI: 10.1038/nchembio.954  1
2012 Kalodimos CG. Protein function and allostery: a dynamic relationship. Annals of the New York Academy of Sciences. 1260: 81-6. PMID 22256894 DOI: 10.1111/j.1749-6632.2011.06319.x  1
2012 Tzeng SR, Pai MT, Kalodimos CG. NMR studies of large protein systems. Methods in Molecular Biology (Clifton, N.J.). 831: 133-40. PMID 22167672 DOI: 10.1007/978-1-61779-480-3_8  1
2011 Chen L, Balabanidou V, Remeta DP, Minetti CA, Portaliou AG, Economou A, Kalodimos CG. Structural instability tuning as a regulatory mechanism in protein-protein interactions. Molecular Cell. 44: 734-44. PMID 22152477 DOI: 10.1016/j.molcel.2011.09.022  1
2011 Sriram G, Reichman C, Tunceroglu A, Kaushal N, Saleh T, Machida K, Mayer B, Ge Q, Li J, Hornbeck P, Kalodimos CG, Birge RB. Phosphorylation of Crk on tyrosine 251 in the RT loop of the SH3C domain promotes Abl kinase transactivation. Oncogene. 30: 4645-55. PMID 21602891 DOI: 10.1038/onc.2011.170  1
2011 Kalodimos CG. NMR reveals novel mechanisms of protein activity regulation. Protein Science : a Publication of the Protein Society. 20: 773-82. PMID 21404360 DOI: 10.1002/pro.614  1
2011 Sarkar P, Saleh T, Tzeng SR, Birge RB, Kalodimos CG. Structural basis for regulation of the Crk signaling protein by a proline switch. Nature Chemical Biology. 7: 51-7. PMID 21131971 DOI: 10.1038/nchembio.494  1
2011 Tzeng SR, Kalodimos CG. Protein dynamics and allostery: an NMR view. Current Opinion in Structural Biology. 21: 62-7. PMID 21109422 DOI: 10.1016/j.sbi.2010.10.007  1
2009 Tzeng SR, Kalodimos CG. Dynamic activation of an allosteric regulatory protein. Nature. 462: 368-72. PMID 19924217 DOI: 10.1038/nature08560  1
2009 Gouridis G, Karamanou S, Gelis I, Kalodimos CG, Economou A. Signal peptides are allosteric activators of the protein translocase. Nature. 462: 363-7. PMID 19924216 DOI: 10.1038/nature08559  1
2009 Popovych N, Tzeng SR, Tonelli M, Ebright RH, Kalodimos CG. Structural basis for cAMP-mediated allosteric control of the catabolite activator protein. Proceedings of the National Academy of Sciences of the United States of America. 106: 6927-32. PMID 19359484 DOI: 10.1073/pnas.0900595106  1
2008 Karamanou S, Bariami V, Papanikou E, Kalodimos CG, Economou A. Assembly of the translocase motor onto the preprotein-conducting channel. Molecular Microbiology. 70: 311-22. PMID 18761620 DOI: 10.1111/j.1365-2958.2008.06402.x  1
2007 Gelis I, Bonvin AM, Keramisanou D, Koukaki M, Gouridis G, Karamanou S, Economou A, Kalodimos CG. Structural basis for signal-sequence recognition by the translocase motor SecA as determined by NMR. Cell. 131: 756-69. PMID 18022369 DOI: 10.1016/j.cell.2007.09.039  1
2007 Karamanou S, Gouridis G, Papanikou E, Sianidis G, Gelis I, Keramisanou D, Vrontou E, Kalodimos CG, Economou A. Preprotein-controlled catalysis in the helicase motor of SecA. The Embo Journal. 26: 2904-14. PMID 17525736 DOI: 10.1038/sj.emboj.7601721  1
2007 Sarkar P, Reichman C, Saleh T, Birge RB, Kalodimos CG. Proline cis-trans isomerization controls autoinhibition of a signaling protein. Molecular Cell. 25: 413-26. PMID 17289588 DOI: 10.1016/j.molcel.2007.01.004  1
2006 Popovych N, Sun S, Ebright RH, Kalodimos CG. Dynamically driven protein allostery. Nature Structural & Molecular Biology. 13: 831-8. PMID 16906160 DOI: 10.1038/nsmb1132  1
2006 Keramisanou D, Biris N, Gelis I, Sianidis G, Karamanou S, Economou A, Kalodimos CG. Disorder-order folding transitions underlie catalysis in the helicase motor of SecA. Nature Structural & Molecular Biology. 13: 594-602. PMID 16783375 DOI: 10.1038/nsmb1108  1
2005 Papanikou E, Karamanou S, Baud C, Frank M, Sianidis G, Keramisanou D, Kalodimos CG, Kuhn A, Economou A. Identification of the preprotein binding domain of SecA. The Journal of Biological Chemistry. 280: 43209-17. PMID 16243836 DOI: 10.1074/jbc.M509990200  1
2004 Kalodimos CG, Boelens R, Kaptein R. Toward an integrated model of protein-DNA recognition as inferred from NMR studies on the Lac repressor system. Chemical Reviews. 104: 3567-86. PMID 15303828 DOI: 10.1021/cr0304065  1
2004 Kalodimos CG, Biris N, Bonvin AM, Levandoski MM, Guennuegues M, Boelens R, Kaptein R. Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes. Science (New York, N.Y.). 305: 386-9. PMID 15256668 DOI: 10.1126/science.1097064  1
2004 Durney MA, Wechselberger RW, Kalodimos CG, Kaptein R, Vorgias CE, Boelens R. An alternate conformation of the hyperthermostable HU protein from Thermotoga maritima has unexpectedly high flexibility. Febs Letters. 563: 49-54. PMID 15063721 DOI: 10.1016/S0014-5793(04)00247-9  1
2002 Kalodimos CG, Bonvin AM, Salinas RK, Wechselberger R, Boelens R, Kaptein R. Plasticity in protein-DNA recognition: lac repressor interacts with its natural operator 01 through alternative conformations of its DNA-binding domain. The Embo Journal. 21: 2866-76. PMID 12065400 DOI: 10.1093/emboj/cdf318  1
2002 Kalodimos CG, Boelens R, Kaptein R. A residue-specific view of the association and dissociation pathway in protein--DNA recognition. Nature Structural Biology. 9: 193-7. PMID 11850636 DOI: 10.1038/nsb763  1
2001 Kalodimos CG, Folkers GE, Boelens R, Kaptein R. Strong DNA binding by covalently linked dimeric Lac headpiece: evidence for the crucial role of the hinge helices. Proceedings of the National Academy of Sciences of the United States of America. 98: 6039-44. PMID 11353825 DOI: 10.1073/pnas.101129898  1
2000 Kalodimos CG, Gerothanassis IP, Pierattelli R, Troganis A. Multinuclear (13C, 17O, 57Fe) NMR studies of carbonmonoxy heme proteins and synthetic model compounds Journal of Inorganic Biochemistry. 79: 371-380. PMID 10830891 DOI: 10.1016/S0162-0134(99)00239-1  1
1999 Kalodimos CG, Gerothanassis IP, Rose E, Hawkes GE, Pierattelli R. Iron-57 nuclear shieldings as a quantitative tool for estimating porphyrin ruffling in hexacoordinated carbonmonoxy heme model compounds in solution Journal of the American Chemical Society. 121: 2903-2908. DOI: 10.1021/ja983889g  1
1999 Kalodimos CG, Gerothanassis IP, Pierattelli R, Ancian B. Carbon-13 and oxygen-17 chemical shifts, (16O/18O) isotope effects on13C chemical shifts, and vibrational frequencies of carbon monoxide in various solvents and of the Fe-C-O unit in carbonmonoxy heme proteins and synthetic model compounds Inorganic Chemistry. 38: 4283-4293.  1
1998 Kalodimos CG, Gerothanassis IP, Hawkes GE. 13C- and 57Fe-NMR studies of the Fe-C-O unit of heme proteins and synthetic model compounds in solution: Comparison with IR vibrational frequencies and X-ray structural data Biospectroscopy. 4. PMID 9787915  1
1998 Gerothanassis IP, Kalodimos CG, Hawkes GE, Haycock P. The Effects of Atropisomerism and Porphyrin Deformation on 57Fe Shieldings in Superstructured Hemoprotein Models Journal of Magnetic Resonance. 131: 163-165. PMID 9533921  1
1998 Kalodimos CG, Gerothanassis IP. Carbon-13 nuclear shieldings as a novel method in estimating porphyrin ruffling in hexacoordinated superstructured heme model compounds in solution [4] Journal of the American Chemical Society. 120: 6407-6408. DOI: 10.1021/ja980483v  1
1998 Kalodimos CG, Gerothanassis IP, Troganis A, Loock B, Momenteau M. 13C shieldings, 18O isotope effects on 13C shieldings, and 57Fe-13C spin couplings of the Fe-C-O unit in superstructured hemoprotein models: Comparison with hemoproteins, C-O vibrational frequencies, and X-ray structural data Journal of Biomolecular Nmr. 11: 423-435.  1
1996 Gerothanassis IP, Kalodimos CG. NMR shielding and the periodic table Journal of Chemical Education. 73: 801-804.  1
1996 Gerothanassis IP, Momenteau M, Barrie PJ, Kalodimos CG, Hawkes GE. 13C CP/MAS NMR Studies of Hemoprotein Models with and without an Axial Hindered Base: 13C Shielding Tensors and Comparison with Hemoproteins and X-ray Structural Data Inorganic Chemistry. 35: 2674-2679.  1
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