Scott M. Geib, Ph.D. - Publications

Affiliations: 
2008 Pennsylvania State University, State College, PA, United States 
Area:
Entomology Biology, Microbiology Biology, Biochemistry

72/106 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Sim SB, Congrains C, Velasco-Cuervo SM, Corpuz RL, Kauwe AN, Scheffler B, Geib SM. Genome Report: Chromosome-scale Genome Assembly of the West Indian fruit fly Anastrepha obliqua (Diptera: Tephritidae). G3 (Bethesda, Md.). PMID 38301265 DOI: 10.1093/g3journal/jkae024  0.305
2023 Congrains C, Dupuis JR, Rodriguez EJ, Norrbom AL, Steck G, Sutton B, Nolazco N, de Brito RA, Geib SM. Phylogenomic analysis provides diagnostic tools for the identification of (Diptera: Tephritidae) species complex. Evolutionary Applications. 16: 1598-1618. PMID 37752958 DOI: 10.1111/eva.13589  0.309
2021 Childers AK, Geib SM, Sim SB, Poelchau MF, Coates BS, Simmonds TJ, Scully ED, Smith TPL, Childers CP, Corpuz RL, Hackett K, Scheffler B. The USDA-ARS Ag100Pest Initiative: High-Quality Genome Assemblies for Agricultural Pest Arthropod Research. Insects. 12. PMID 34357286 DOI: 10.3390/insects12070626  0.647
2020 Bellinger MR, Paudel R, Starnes S, Kambic L, Kantar M, Wolfgruber T, Lamour K, Geib S, Sim S, Miyasaka S, Helmkampf M, Shintaku M. Taro Genome Assembly and Linkage Map Reveal QTLs for Resistance to Taro Leaf Blight. G3 (Bethesda, Md.). PMID 32546503 DOI: 10.1534/G3.120.401367  0.416
2020 Dupuis JR, Geib SM, Schmidt C, Rubinoff D. Genomic‐wide sequencing reveals remarkable connection between widely disjunct populations of the internationally threatened bog buck moth Insect Conservation and Diversity. 13: 495-500. DOI: 10.1111/Icad.12432  0.314
2020 Garzón-Orduña IJ, Geib SM, Ledezma L, Bremer FT, Barr NB. Implementing Low-Cost, High Accuracy DNA Barcoding From Single Molecule Sequencing to Screen Larval Tephritid Fruit Flies Intercepted at Ports of Entry Annals of the Entomological Society of America. 113: 288-297. DOI: 10.1093/Aesa/Saz071  0.393
2020 Rubinoff D, Reil JB, Osborne KH, Gregory CJ, Geib SM, Dupuis JR. Phylogenomics reveals conservation challenges and opportunities for cryptic endangered species in a rapidly disappearing desert ecosystem Biodiversity and Conservation. 29: 2185-2200. DOI: 10.1007/S10531-020-01968-W  0.369
2020 Dupuis JR, Geib SM, Osborne KH, Rubinoff D. Genomics confirms surprising ecological divergence and isolation in an endangered butterfly Biodiversity and Conservation. 29: 1897-1921. DOI: 10.1007/S10531-020-01950-6  0.404
2020 Koch JB, Dupuis JR, Jardeleza M, Ouedraogo N, Geib SM, Follett PA, Price DK. Population genomic and phenotype diversity of invasive Drosophila suzukii in Hawai‘i Biological Invasions. 22: 1753-1770. DOI: 10.1007/S10530-020-02217-5  0.376
2019 Han X, Lu C, Geib SM, Zheng J, Wu S, Zhang F, Liang G. Characterization of Lajonquiere (Lepidoptera: Lasiocampidae) Transcriptome across All Life Stages. Insects. 10. PMID 31835398 DOI: 10.3390/Insects10120442  0.375
2019 Kingan SB, Urban J, Lambert CC, Baybayan P, Childers AK, Coates B, Scheffler B, Hackett K, Korlach J, Geib SM. A high-quality genome assembly from a single, field-collected spotted lanternfly (Lycorma delicatula) using the PacBio Sequel II system. Gigascience. 8. PMID 31609423 DOI: 10.1093/Gigascience/Giz122  0.391
2019 Dupuis JR, Ruiz-Arce R, Barr NB, Thomas DB, Geib SM. Range-wide population genomics of the Mexican fruit fly: Toward development of pathway analysis tools. Evolutionary Applications. 12: 1641-1660. PMID 31462920 DOI: 10.1111/Eva.12824  0.394
2019 Helmkampf M, Bellinger MR, Geib SM, Sim SB, Takabayashi M. Draft genome of the rice coral Montipora capitata obtained from linked-read sequencing. Genome Biology and Evolution. PMID 31243452 DOI: 10.1093/Gbe/Evz135  0.386
2019 Gupta AK, Scully ED, Palmer NA, Geib SM, Sarath G, Hein GL, Tatineni S. Wheat streak mosaic virus alters the transcriptome of its vector, wheat curl mite (Aceria tosichella Keifer), to enhance mite development and population expansion. The Journal of General Virology. PMID 31017568 DOI: 10.1099/Jgv.0.001256  0.658
2019 Garzón-Orduña IJ, Geib SM, Barr NB. The Genetic Diversity of Bactrocera dorsalis (Diptera: Tephritidae) in China and Neighboring Countries: A Review From Published Studies. Journal of Economic Entomology. PMID 31004431 DOI: 10.1093/Jee/Toz073  0.311
2019 Koch KG, Scully ED, Palmer NA, Geib SM, Sarath G, Heng-Moss T, Bradshaw JD. Divergent Switchgrass Cultivars Modify Cereal Aphid Transcriptomes. Journal of Economic Entomology. PMID 30915439 DOI: 10.1093/Jee/Toz053  0.657
2018 Sim SB, Kauwe A, Ruano REY, Rendon P, Geib SM. The ABCs of CRISPR in Tephritidae: Developing methods for inducing heritable mutations in the genera Anastrepha, Bactrocera, and Ceratitis. Insect Molecular Biology. PMID 30422347 DOI: 10.1111/Imb.12550  0.309
2018 Dupuis JR, Peigler RS, Geib SM, Rubinoff D. Phylogenomics supports incongruence between ecological specialization and taxonomy in a charismatic clade of buck moths. Molecular Ecology. PMID 30267600 DOI: 10.1111/Mec.14883  0.418
2018 Reil JB, Doorenweerd C, San Jose M, Sim S, Geib S, Rubinoff D. Transpacific coalescent pathways of coconut rhinoceros beetle biotypes: resistance to biological control catalyzes resurgence of an old pest. Molecular Ecology. PMID 30252975 DOI: 10.1111/Mec.14879  0.35
2018 San Jose M, Doorenweerd C, Leblanc L, Barr N, Geib S, Rubinoff D. Tracking the Origins of Fly Invasions; Using Mitochondrial Haplotype Diversity to Identify Potential Source Populations in Two Genetically Intertwined Fruit Fly Species (Bactrocera carambolae and Bactrocera dorsalis [Diptera: Tephritidae]). Journal of Economic Entomology. PMID 30247661 DOI: 10.1093/Jee/Toy272  0.362
2018 Burke GR, Simmonds TJ, Sharanowski BJ, Geib SM. Rapid viral symbiogenesis via changes in parasitoid wasp genome architecture. Molecular Biology and Evolution. PMID 30053110 DOI: 10.1093/Molbev/Msy148  0.397
2018 Chang CL, Geib SM. Comparative Proteomic Profiling between Each of Two Consecutive Developmental Stages of the Solanum Fruit Fly, (Hendel). International Journal of Molecular Sciences. 19. PMID 29987199 DOI: 10.3390/Ijms19071996  0.333
2018 Scully ED, Geib SM, Mason CJ, Carlson JE, Tien M, Chen HY, Harding S, Tsai CJ, Hoover K. Host-plant induced changes in microbial community structure and midgut gene expression in an invasive polyphage (Anoplophora glabripennis). Scientific Reports. 8: 9620. PMID 29942001 DOI: 10.1038/S41598-018-27476-0  0.757
2018 Dupuis JR, Guerrero FD, Skoda SR, Phillips PL, Welch JB, Schlater JL, Azeredo-Espin AML, Pérez de León AA, Geib SM. Molecular Characterization of the 2016 New World Screwworm (Diptera: Calliphoridae) Outbreak in the Florida Keys. Journal of Medical Entomology. PMID 29788142 DOI: 10.1093/Jme/Tjy078  0.371
2018 Geib SM, Hall B, Derego T, Bremer FT, Cannoles K, Sim SB. Genome Annotation Generator: a simple tool for generating and correcting WGS annotation tables for NCBI submission. Gigascience. 7: 1-5. PMID 29635297 DOI: 10.1093/Gigascience/Giy018  0.354
2018 Dupuis JR, Bremer FT, Kauwe A, San Jose M, Leblanc L, Rubinoff D, Geib SM. HiMAP: Robust phylogenomics from highly multiplexed amplicon sequencing. Molecular Ecology Resources. PMID 29633537 DOI: 10.1111/1755-0998.12783  0.349
2018 Gutierrez-Coarite R, Yoneishi NM, Pulakkatu-Thodi I, Mollinedo J, Calla B, Wright MG, Geib SM. PCR-Based Gut Content Analysis to Detect Predation of Eriococcus ironsidei (Hemiptera: Eriococcidae) by Coccinellidae Species in Macadamia Nut Orchards in Hawaii. Journal of Economic Entomology. PMID 29474561 DOI: 10.1093/Jee/Toy019  0.343
2018 Liang GH, Fu LQ, Zheng JX, Lin HY, Lin JH, Sim SB, Jang EB, Heller WP, Geib SM. Molecular characterization of interspecific competition of Diachasmimorpha longicaudata (Ashmead) and Fopius arisanus (Sonan) parasitizing the oriental fruit fly, Bactrocera dorsalis (Hendel) Biological Control. 118: 10-15. DOI: 10.1016/J.Biocontrol.2017.11.012  0.365
2018 Chang CL, Geib SM. Comparative proteomic profiling within each developmental stage of the solanum fruit fly, Bactrocera latifrons Hendel Journal of Asia-Pacific Entomology. 21: 1186-1197. DOI: 10.1016/J.Aspen.2018.08.014  0.346
2018 Fezza TJ, Geib SM, Shelly TE. Comparative rearing parameters for bisexual and genetic sexing strains of Zeugodacus cucurbitae and Bactrocera dorsalis (Diptera: Tephritidae) on an artificial diet Journal of Asia-Pacific Entomology. 21: 283-287. DOI: 10.1016/J.Aspen.2018.01.007  0.302
2018 Chang CL, Liang GH, Geib SM. Proteomic interactions between the parasitoid Diachasmimorpha longicaudata and the oriental fruit fly, Bactrocera dorsalis during host parasitism Journal of Asia-Pacific Entomology. 21: 335-344. DOI: 10.1016/J.Aspen.2017.12.002  0.333
2017 San Jose M, Doorenweerd C, Leblanc L, Barr N, Geib S, Rubinoff D. Incongruence between molecules and morphology: a seven-gene phylogeny of Dacini fruit flies paves the way for reclassification (Diptera: Tephritidae). Molecular Phylogenetics and Evolution. PMID 29224785 DOI: 10.1016/J.Ympev.2017.12.001  0.397
2017 Frazier M, Helmkampf M, Bellinger MR, Geib SM, Takabayashi M. De novo metatranscriptome assembly and coral gene expression profile of Montipora capitata with growth anomaly. Bmc Genomics. 18: 710. PMID 28893194 DOI: 10.1186/S12864-017-4090-Y  0.322
2017 Geib SM, Liang GH, Murphy TD, Sim SB. Whole Genome Sequencing of the Braconid Parasitoid Wasp Fopius arisanus, an Important Biocontrol Agent of Pest Tepritid Fruit Flies. G3 (Bethesda, Md.). PMID 28584080 DOI: 10.1534/G3.117.040741  0.457
2017 Suzuki JY, Amore TD, Calla B, Palmer NA, Scully ED, Sattler SE, Sarath G, Lichty JS, Myers RY, Keith LM, Matsumoto TK, Geib SM. Organ-specific transcriptome profiling of metabolic and pigment biosynthesis pathways in the floral ornamental progenitor species Anthurium amnicola Dressler. Scientific Reports. 7: 1596. PMID 28473720 DOI: 10.1038/S41598-017-00808-2  0.678
2017 Sim SB, Geib SM. A Chromosome-Scale Assembly of the Bactrocera cucurbitae Genome Provides Insight to the Genetic Basis of White Pupae. G3 (Bethesda, Md.). PMID 28450369 DOI: 10.1534/G3.117.040170  0.324
2017 Papanicolaou A, Schetelig MF, Arensburger P, Atkinson PW, Benoit JB, Bourtzis K, Castañera P, Cavanaugh JP, Chao H, Childers C, Curril I, Dinh H, Doddapaneni H, Dolan A, Dugan S, ... ... Geib S, et al. Erratum to: The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species. Genome Biology. 18: 11. PMID 28100280 DOI: 10.1186/S13059-017-1155-9  0.443
2017 Chung SH, Scully ED, Peiffer M, Geib SM, Rosa C, Hoover K, Felton GW. Host plant species determines symbiotic bacterial community mediating suppression of plant defenses. Scientific Reports. 7: 39690. PMID 28045052 DOI: 10.1038/Srep39690  0.73
2017 Dupuis JR, Sim SB, San Jose M, Leblanc L, Hoassain MA, Rubinoff D, Geib SM. Population genomics and comparisons of selective signatures in two invasions of melon fly, Bactrocera cucurbitae (Diptera: Tephritidae) Biological Invasions. 20: 1211-1228. DOI: 10.1007/S10530-017-1621-Z  0.376
2016 McKenna DD, Scully ED, Pauchet Y, Hoover K, Kirsch R, Geib SM, Mitchell RF, Waterhouse RM, Ahn SJ, Arsala D, Benoit JB, Blackmon H, Bledsoe T, Bowsher JH, Busch A, et al. Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface. Genome Biology. 17: 227. PMID 27832824 DOI: 10.1186/S13059-016-1088-8  0.765
2016 Papanicolaou A, Schetelig MF, Arensburger P, Atkinson PW, Benoit JB, Bourtzis K, Castañera P, Cavanaugh JP, Chao H, Childers C, Curril I, Dinh H, Doddapaneni H, Dolan A, Dugan S, ... ... Geib S, et al. The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species. Genome Biology. 17: 192. PMID 27659211 DOI: 10.1186/S13059-016-1049-2  0.426
2016 Mason CJ, Scully ED, Geib SM, Hoover K. Contrasting diets reveal metabolic plasticity in the tree-killing beetle, Anoplophora glabripennis (Cerambycidae: Lamiinae). Scientific Reports. 6: 33813. PMID 27654346 DOI: 10.1038/Srep33813  0.738
2016 Herr JR, Scully ED, Geib SM, Hoover K, Carlson JE, Geiser DM. Genome Sequence of Fusarium Isolate MYA-4552 from the Midgut of Anoplophora glabripennis, an Invasive, Wood-Boring Beetle. Genome Announcements. 4. PMID 27445364 DOI: 10.1128/Genomea.00544-16  0.752
2016 Tassone EE, Geib SM, Hall B, Fabrick JA, Brent CS, Hull JJ. De novo construction of an expanded transcriptome assembly for the western tarnished plant bug, Lygus hesperus. Gigascience. 5: 6. PMID 26823975 DOI: 10.1186/S13742-016-0109-6  0.398
2016 Abd-Alla AM, Kariithi HM, Cousserans F, Parker NJ, İnce İA, Scully ED, Boeren S, Geib SM, Mekonnen S, Vlak JM, Parker AG, Vreysen MJ, Bergoin M. Comprehensive Annotation of the Glossina pallidipes Salivary Gland Hypertrophy Virus from Ethiopian Tsetse Flies: A proteogenomics Approach. The Journal of General Virology. PMID 26801744 DOI: 10.1099/Jgv.0.000409  0.673
2016 Follett PA, Kawabata A, Nelson R, Asmus G, Burt J, Goschke K, Ewing C, Gaertner J, Brill E, Geib S. Predation by flat bark beetles (Coleoptera: Silvanidae and Laemophloeidae) on coffee berry borer (Coleoptera: Curculionidae) in Hawaii coffee Biological Control. 101: 152-158. DOI: 10.1016/J.Biocontrol.2016.07.002  0.351
2015 Calla B, Geib SM. MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae. Bmc Genomics. 16: 740. PMID 26438165 DOI: 10.1186/S12864-015-1835-3  0.387
2015 Calla B, Sim SB, Hall B, DeRego T, Liang GH, Geib SM. Transcriptome of the egg parasitoid Fopius arisanus: an important biocontrol tool for Tephritid fruit fly suppression. Gigascience. 4: 36. PMID 26244090 DOI: 10.1186/S13742-015-0075-4  0.342
2015 Shapiro LR, Scully ED, Roberts D, Straub TJ, Geib SM, Park J, Stephenson AG, Salaau Rojas E, Liu Q, Beattie G, Gleason M, De Moraes CM, Mescher MC, Fleischer SG, Kolter R, et al. Draft Genome Sequence of Erwinia tracheiphila, an Economically Important Bacterial Pathogen of Cucurbits. Genome Announcements. 3. PMID 26044415 DOI: 10.1128/Genomea.00482-15  0.684
2015 Sim SB, Calla B, Hall B, DeRego T, Geib SM. Reconstructing a comprehensive transcriptome assembly of a white-pupal translocated strain of the pest fruit fly Bactrocera cucurbitae. Gigascience. 4: 14. PMID 25830018 DOI: 10.1186/S13742-015-0053-X  0.406
2015 Liang GH, Jang EB, Heller WP, Chang CL, Chen JH, Zhang FP, Geib SM. A qPCR-based method for detecting parasitism of Fopius arisanus (Sonan) in oriental fruit flies, Bactrocera dorsalis (Hendel). Pest Management Science. PMID 25641860 DOI: 10.1002/Ps.3976  0.322
2015 Pillon Y, Lucas E, Johansen JB, Sakishima T, Hall B, Geib SM, Stacy EA. An Expanded Metrosideros (Myrtaceae) to include Carpolepis and Tepualia Based on Nuclear Genes Systematic Botany. 40: 782-790. DOI: 10.1600/036364415X689249  0.386
2015 Schutze MK, Aketarawong N, Amornsak W, Armstrong KF, Augustinos AA, Barr N, Bo W, Bourtzis K, Boykin LM, Cáceres C, Cameron SL, Chapman TA, Chinvinijkul S, Chomi? A, De Meyer M, ... ... Geib SM, et al. Synonymization of key pest species within the Bactrocera dorsalis species complex (Diptera: Tephritidae): Taxonomic changes based on a review of 20 years of integrative morphological, molecular, cytogenetic, behavioural and chemoecological data Systematic Entomology. 40: 456-471. DOI: 10.1111/Syen.12113  0.306
2014 Barr NB, Ledezma LA, Leblanc L, San Jose M, Rubinoff D, Geib SM, Fujita B, Bartels DW, Garza D, Kerr P, Hauser M, Gaimari S. Genetic Diversity of Bactrocera dorsalis (Diptera: Tephritidae) on the Hawaiian Islands: Implications for an Introduction Pathway Into California. Journal of Economic Entomology. 107: 1946-58. PMID 26309285 DOI: 10.1603/Ec13482  0.342
2014 Scully ED, Geib SM, Carlson JE, Tien M, McKenna D, Hoover K. Functional genomics and microbiome profiling of the Asian longhorned beetle (Anoplophora glabripennis) reveal insights into the digestive physiology and nutritional ecology of wood feeding beetles. Bmc Genomics. 15: 1096. PMID 25495900 DOI: 10.1186/1471-2164-15-1096  0.748
2014 Hull JJ, Chaney K, Geib SM, Fabrick JA, Brent CS, Walsh D, Lavine LC. Transcriptome-based identification of ABC transporters in the western tarnished plant bug Lygus hesperus. Plos One. 9: e113046. PMID 25401762 DOI: 10.1371/Journal.Pone.0113046  0.347
2014 Geib SM, Calla B, Hall B, Hou S, Manoukis NC. Characterizing the developmental transcriptome of the oriental fruit fly, Bactrocera dorsalis (Diptera: Tephritidae) through comparative genomic analysis with Drosophila melanogaster utilizing modENCODE datasets. Bmc Genomics. 15: 942. PMID 25348373 DOI: 10.1186/1471-2164-15-942  0.352
2014 Calla B, Hall B, Hou S, Geib SM. A genomic perspective to assessing quality of mass-reared SIT flies used in Mediterranean fruit fly (Ceratitis capitata) eradication in California. Bmc Genomics. 15: 98. PMID 24495485 DOI: 10.1186/1471-2164-15-98  0.328
2014 Manoukis NC, Geib SM, Vargas RI. Effect of host Bactrocera dorsalis sex on yield and quality of the parasitoid Fopius arisanus Biocontrol. 59: 395-402. DOI: 10.1007/S10526-014-9575-X  0.306
2013 Scully ED, Hoover K, Carlson JE, Tien M, Geib SM. Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle. Bmc Genomics. 14: 850. PMID 24304644 DOI: 10.1186/1471-2164-14-850  0.732
2013 Scully ED, Geib SM, Hoover K, Tien M, Tringe SG, Barry KW, Glavina del Rio T, Chovatia M, Herr JR, Carlson JE. Metagenomic profiling reveals lignocellulose degrading system in a microbial community associated with a wood-feeding beetle. Plos One. 8: e73827. PMID 24023907 DOI: 10.1371/Journal.Pone.0073827  0.749
2013 Hull JJ, Geib SM, Fabrick JA, Brent CS. Sequencing and de novo assembly of the western tarnished plant bug (Lygus hesperus) transcriptome. Plos One. 8: e55105. PMID 23357950 DOI: 10.1371/Journal.Pone.0055105  0.393
2013 Jose MS, Leblanc L, Geib SM, Rubinoff D. An evaluation of the species status of bactrocera invadens and the systematics of the bactrocera dorsalis (Diptera: Tephritidae) complex Annals of the Entomological Society of America. 106: 684-694. DOI: 10.1603/An13017  0.358
2012 Geib SM, Scully ED, Jimenez-Gasco Mdel M, Carlson JE, Tien M, Hoover K. Phylogenetic Analysis of Fusarium solani Associated with the Asian Longhorned Beetle, Anoplophora glabripennis. Insects. 3: 141-60. PMID 26467954 DOI: 10.3390/Insects3010141  0.721
2012 Scully ED, Hoover K, Carlson J, Tien M, Geib SM. Proteomic analysis of Fusarium solani isolated from the Asian longhorned beetle, Anoplophora glabripennis. Plos One. 7: e32990. PMID 22496740 DOI: 10.1371/Journal.Pone.0032990  0.734
2012 Geib SM, Scully ED, del Mar Jimenez-Gasco M, Carlson JE, Tien M, Hoover K. Phylogenetic analysis of Fusarium solani associated with the Asian longhorned beetle, Anoplophora glabripennis Insects. 3: 141-160. DOI: 10.3390/insects3010141  0.685
2011 Manoukis N, Geib S, Seo D, McKenney M, Vargas R, Jang E. An optimized protocol for rearing Fopius arisanus, a parasitoid of Tephritid fruit flies. Journal of Visualized Experiments : Jove. PMID 21750493 DOI: 10.3791/2901  0.323
2010 Iyer PR, Geib SM, Catchmark J, Kao TH, Tien M. Genome sequence of a cellulose-producing bacterium, Gluconacetobacter hansenii ATCC 23769. Journal of Bacteriology. 192: 4256-7. PMID 20543071 DOI: 10.1128/Jb.00588-10  0.358
2010 Geib SM, Tien M, Hoover K. Identification of proteins involved in lignocellulose degradation using in gel zymogram analysis combined with mass spectroscopy-based peptide analysis of gut proteins from larval Asian longhorned beetles, Anoplophora glabripennis Insect Science. 17: 253-264. DOI: 10.1111/J.1744-7917.2010.01323.X  0.519
2009 Geib SM, Jimenez-Gasco MDM, Carlson JE, Tien M, Hoover K. Effect of host tree species on cellulase activity and bacterial community composition in the gut of larval asian longhorned beetle Environmental Entomology. 38: 686-699. PMID 19508777 DOI: 10.1603/022.038.0320  0.576
2009 Geib SM, del Mar Jimenez-Gasco M, Carlson JE, Tien M, Jabbour R, Hoover K. Microbial community profiling to investigate transmission of bacteria between life stages of the wood-boring beetle, Anoplophora glabripennis Microbial Ecology. 58: 199-211. PMID 19277770 DOI: 10.1007/S00248-009-9501-4  0.589
2008 Geib SM, Filley TR, Hatcher PG, Hoover K, Carlson JE, Jimenez-Gasco MDM, Nakagawa-Izumi A, Sleighter RL, Tien M. Lignin degradation in wood-feeding insects Proceedings of the National Academy of Sciences of the United States of America. 105: 12932-12937. PMID 18725643 DOI: 10.1073/Pnas.0805257105  0.601
Low-probability matches (unlikely to be authored by this person)
2023 Schweizer RM, Meidt CG, Benavides LR, Wilson JS, Griswold TL, Sim SB, Geib SM, Branstetter MG. Reference genome for the Mojave poppy bee (Perdita meconis), a specialist pollinator of conservation concern. The Journal of Heredity. PMID 38088446 DOI: 10.1093/jhered/esad076  0.295
2014 Chang CL, Geib S, Cho IK, Li QX, Stanley D. Dietary lufenuron reduces egg hatch and influences protein expression in the fruit fly Bactrocera latifrons (Hendel). Archives of Insect Biochemistry and Physiology. 86: 193-208. PMID 24753137 DOI: 10.1002/Arch.21169  0.295
2017 Sim SB, Ruiz-Arce R, Barr NB, Geib SM. A New Diagnostic Resource for Ceratitis capitata Strain Identification Based on QTL Mapping. G3 (Bethesda, Md.). PMID 28889103 DOI: 10.1534/G3.117.300169  0.295
2016 Christie AE, Joe Hull J, Richer JA, Geib SM, Tassone EE. Prediction of a peptidome for the Western tarnished plant bug Lygus hesperus. General and Comparative Endocrinology. PMID 27789347 DOI: 10.1016/J.Ygcen.2016.10.008  0.294
2012 Hsu JC, Feng HT, Wu WJ, Geib SM, Mao CH, Vontas J. Truncated transcripts of nicotinic acetylcholine subunit gene Bdα6 are associated with spinosad resistance in Bactrocera dorsalis. Insect Biochemistry and Molecular Biology. 42: 806-15. PMID 22898623 DOI: 10.1016/J.Ibmb.2012.07.010  0.293
2012 Chen Q, Marshall MN, Geib SM, Tien M, Richard TL. Effects of laccase on lignin depolymerization and enzymatic hydrolysis of ensiled corn stover. Bioresource Technology. 117: 186-92. PMID 22613895 DOI: 10.1016/J.Biortech.2012.04.085  0.288
2022 Cohen ZP, Perkin LC, Sim SB, Stahlke AR, Geib SM, Childers AK, Smith TPL, Suh C. Insight into weevil biology from a reference quality genome of the boll weevil, Anthonomus grandis grandis Boheman (Coleoptera: Curculionidae). G3 (Bethesda, Md.). PMID 36454104 DOI: 10.1093/g3journal/jkac309  0.286
2016 Sim SB, Yoneishi NM, Brill E, Geib SM, Follett PA. Molecular Markers Detect Cryptic Predation on Coffee Berry Borer (Coleoptera: Curculionidae) by Silvanid and Laemophloeid Flat Bark Beetles (Coleoptera: Silvanidae, Laemophloeidae) in Coffee Beans. Journal of Economic Entomology. 109: 100-5. PMID 26487745 DOI: 10.1093/Jee/Tov284  0.282
2023 Koch JBU, Sim SB, Scheffler B, Geib SM, Smith TA. Chromosome-scale genome assembly of the rusty patched bumble bee, Bombus affinis (Cresson) (Hymenoptera: Apidae), an endangered North American pollinator. G3 (Bethesda, Md.). PMID 37336593 DOI: 10.1093/g3journal/jkad119  0.278
2016 Chang CL, Goodman CL, Ringbauer J, Geib SM, Stanley D. LARVAL X-RAY IRRADIATION INFLUENCES PROTEIN EXPRESSION IN PUPAE OF THE ORIENTAL FRUIT FLY, BACTROCERA DORSALIS. Archives of Insect Biochemistry and Physiology. PMID 27079560 DOI: 10.1002/Arch.21330  0.272
2023 Stahlke AR, Chang J, Chudalayandi S, Heu CC, Geib SM, Scheffler BE, Childers AK, Fabrick JA. Chromosome-scale genome assembly of the pink bollworm, Pectinophora gossypiella, a global pest of cotton. G3 (Bethesda, Md.). PMID 36790801 DOI: 10.1093/g3journal/jkad040  0.271
2015 Chang CL, Villalun M, Geib SM, Goodman CL, Ringbauer J, Stanley D. Pupal X-ray irradiation influences protein expression in adults of the oriental fruit fly, Bactrocera dorsalis. Journal of Insect Physiology. 76: 7-16. PMID 25772096 DOI: 10.1016/J.Jinsphys.2015.03.002  0.27
2017 Dupuis JR, Bremer FT, Jombart T, Sim SB, Geib SM. mvMapper: interactive spatial mapping of genetic structures. Molecular Ecology Resources. PMID 28987008 DOI: 10.1111/1755-0998.12724  0.269
2017 Glastad KM, Arsenault SV, Vertacnik KL, Geib SM, Kay S, Danforth BN, Rehan SM, Linnen CR, Kocher SD, Hunt BG. Variation in DNA Methylation Is Not Consistently Reflected by Sociality in Hymenoptera. Genome Biology and Evolution. 9: 1687-1698. PMID 28854636 DOI: 10.1093/Gbe/Evx128  0.269
2016 Hsu PK, Huang LH, Geib SM, Hsu JC. Identification of a carboxylesterase associated with resistance to naled in Bactrocera dorsalis (Hendel). Pesticide Biochemistry and Physiology. 131: 24-31. PMID 27265823 DOI: 10.1016/J.Pestbp.2016.02.001  0.268
2022 Paulo DF, Cha AY, Kauwe AN, Curbelo K, Corpuz RL, Simmonds TJ, Sim SB, Geib SM. A Unified Protocol for CRISPR/Cas9-Mediated Gene Knockout in Tephritid Fruit Flies Led to the Recreation of White Eye and White Puparium Phenotypes in the Melon Fly. Journal of Economic Entomology. PMID 36263914 DOI: 10.1093/jee/toac166  0.261
2023 Davis JS, Sim S, Geib S, Sheffler B, Linnen CR. Whole-genome resequencing data support a single introduction of the invasive white pine sawfly, Diprion similis. The Journal of Heredity. PMID 36827463 DOI: 10.1093/jhered/esad012  0.257
2022 Stahlke AR, Chang J, Tembrock LR, Sim SB, Chudalayandi S, Geib SM, Scheffler BE, Perera OP, Gilligan TM, Childers AK, Hackett KJ, Coates BS. A chromosome-scale genome assembly of a Helicoverpa zea strain resistant to Bacillus thuringiensis Cry1Ac insecticidal protein. Genome Biology and Evolution. PMID 35959935 DOI: 10.1093/gbe/evac131  0.255
2023 Mason CJ, Auth J, Geib SM. Gut bacterial population and community dynamics following adult emergence in pest tephritid fruit flies. Scientific Reports. 13: 13723. PMID 37607978 DOI: 10.1038/s41598-023-40562-2  0.254
2023 Vertacnik KL, Herrig DK, Godfrey RK, Hill T, Geib SM, Unckless RL, Nelson DR, Linnen CR. Evolution of five environmentally responsive gene families in a pine-feeding sawfly, (Hymenoptera: Diprionidae). Ecology and Evolution. 13: e10506. PMID 37791292 DOI: 10.1002/ece3.10506  0.251
2014 Manoukis NC, Hall B, Geib SM. A computer model of insect traps in a landscape. Scientific Reports. 4: 7015. PMID 25388652 DOI: 10.1038/Srep07015  0.237
2023 Mao M, Simmonds TJ, Stouthamer CM, Kehoe TM, Geib SM, Burke GR. A chromosome scale assembly of the parasitoid wasp Venturia canescens provides insight into the process of virus domestication. G3 (Bethesda, Md.). PMID 37345948 DOI: 10.1093/g3journal/jkad137  0.235
2023 San Jose M, Doorenweerd C, Geib S, Barr N, Dupuis JR, Leblanc L, Kauwe A, Morris KY, Rubinoff D. Interspecific gene flow obscures phylogenetic relationships in an important insect pest species complex. Molecular Phylogenetics and Evolution. 188: 107892. PMID 37524217 DOI: 10.1016/j.ympev.2023.107892  0.232
2019 Helmkampf M, Renee Bellinger M, Geib SM, Sim SB, Takabayashi M. Draft Genome of the Rice CoralMontipora capitata Obtained from Linked-Read Sequencing. Genome Biology and Evolution. 11: 3094. PMID 31682726 DOI: 10.1093/gbe/evz203  0.221
2021 Wan X, Saito JA, Hou S, Geib SM, Yuryev A, Higa LM, Womersley CZ, Alam M. The Aphelenchus avenae genome highlights evolutionary adaptation to desiccation. Communications Biology. 4: 1232. PMID 34711923 DOI: 10.1038/s42003-021-02778-8  0.219
2023 Vernygora OV, Congrains C, Geib SM, Dupuis JR. HiMAP2: Identifying phylogenetically informative genetic markers from diverse genomic resources. Molecular Ecology Resources. PMID 36728891 DOI: 10.1111/1755-0998.13762  0.208
2021 Wan X, Saito JA, Hou S, Geib SM, Yuryev A, Higa LM, Womersley CZ, Alam M. Author Correction: The Aphelenchus avenae genome highlights evolutionary adaptation to desiccation. Communications Biology. 4: 1299. PMID 34773097 DOI: 10.1038/s42003-021-02824-5  0.204
2023 Wright A, Wilkinson MD, Mungall C, Cain S, Richards S, Sternberg P, Provin E, Jacobs JL, Geib S, Raciti D, Yook K, Stein L, Molik DC. DATA RESOURCES AND ANALYSES FAIR Header Reference genome: A TRUSTworthy standard. Biorxiv : the Preprint Server For Biology. PMID 38076838 DOI: 10.1101/2023.11.29.569306  0.184
2021 Ward CM, Aumann RA, Whitehead MA, Nikolouli K, Leveque G, Gouvi G, Fung E, Reiling SJ, Djambazian H, Hughes MA, Whiteford S, Caceres-Barrios C, Nguyen TNM, Choo A, Crisp P, ... ... Geib SM, et al. White pupae phenotype of tephritids is caused by parallel mutations of a MFS transporter. Nature Communications. 12: 491. PMID 33479218 DOI: 10.1038/s41467-020-20680-5  0.179
2022 Sim SB, Corpuz RL, Simmonds TJ, Geib SM. HiFiAdapterFilt, a memory efficient read processing pipeline, prevents occurrence of adapter sequence in PacBio HiFi reads and their negative impacts on genome assembly. Bmc Genomics. 23: 157. PMID 35193521 DOI: 10.1186/s12864-022-08375-1  0.177
2023 Huang Q, Sim SB, Geib SM, Childers A, Liu J, Wei X, Han W, Posada-Florez F, Xue AZ, Li Z, Evans JD. Identification of sex chromosomes and primary sex ratio in the small hive beetle, a worldwide parasite of honey bees. Gigascience. 12. PMID 37489752 DOI: 10.1093/gigascience/giad056  0.172
2023 Mason CJ, Auth J, Geib SM. Author Correction: Gut bacterial population and community dynamics following adult emergence in pest tephritid fruit flies. Scientific Reports. 13: 16613. PMID 37789038 DOI: 10.1038/s41598-023-43742-2  0.153
2016 Shintaku MH, Kimball HL, Brown AD, Miyasaka SC, Sim SB, Geib SM. Using genotyping by sequencing (GBS) to identify loci in Colocasiae esculenta linked to Phytophthora colocasiae resistance Acta Horticulturae. 1118: 131-138. DOI: 10.17660/ActaHortic.2016.1118.19  0.144
2015 Hsu PK, Huang LH, Geib SM, Hsu JC. Identification of a carboxylesterase associated with resistance to naled in Bactrocera dorsalis (Hendel) Pesticide Biochemistry and Physiology. DOI: 10.1016/j.pestbp.2016.02.001  0.089
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