| Year |
Citation |
Score |
| 2012 |
Ramilowski JA, Farrelly D. Fixed node diffusion Monte Carlo using a genetic algorithm: a study of the CO-(4)He(N) complex, N = 1…10. Physical Chemistry Chemical Physics : Pccp. 14: 8123-36. PMID 22538980 DOI: 10.1039/C2Cp40541E |
0.68 |
|
| 2011 |
Suárez AG, Ramilowski JA, Benito RM, Farrelly D. Renormalization of the rotational constants of an ammonia molecule seeded into a 4He droplet Chemical Physics Letters. 502: 14-22. DOI: 10.1016/J.Cplett.2010.12.006 |
0.708 |
|
| 2010 |
Ramilowski JA, Farrelly D. Computation of nodal surfaces in fixed-node diffusion Monte Carlo calculations using a genetic algorithm. Physical Chemistry Chemical Physics : Pccp. 12: 12450-6. PMID 20717596 DOI: 10.1039/C0Cp00373E |
0.621 |
|
| 2009 |
Ramilowski JA, Prado SD, Borondo F, Farrelly D. Fractal Weyl law behavior in an open Hamiltonian system. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 055201. PMID 20365032 DOI: 10.1103/Physreve.80.055201 |
0.563 |
|
| 2009 |
Gamboa A, Hernández H, Ramilowski JA, Losada JC, Benito RM, Borondo F, Farrelly D. Chaos in the classical mechanics of bound and quasi-bound HX-4He complexes with X = F, Cl, Br, CN. Physical Chemistry Chemical Physics : Pccp. 11: 8203-13. PMID 19756276 DOI: 10.1039/B902486G |
0.638 |
|
| 2007 |
Ramilowski JA, Mikosz AA, Farrelly D, Fajín JL, Fernandez B. Rotational structure of small 4He clusters seeded with HF, HCl, and HBr molecules. The Journal of Physical Chemistry. A. 111: 12275-88. PMID 17929781 DOI: 10.1021/Jp0746143 |
0.587 |
|
| 2006 |
Mikosz AA, Ramilowski JA, Farrelly D. Quantum solvation dynamics of HCN in a helium-4 droplet. The Journal of Chemical Physics. 125: 014312. PMID 16863303 DOI: 10.1063/1.2213253 |
0.59 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2010 |
Wang LM, Averkiev BB, Ramilowski JA, Huang W, Wang LS, Boldyrev AI. Planar to linear structural transition in small boron-carbon mixed clusters: C(x)B(5-x)- (x = 1-5). Journal of the American Chemical Society. 132: 14104-12. PMID 20857982 DOI: 10.1021/Ja103846Q |
0.299 |
|
| 2020 |
Ramilowski JA, Yip CW, Agrawal S, Chang JC, Ciani Y, Kulakovskiy IV, Mendez M, Ooi JLC, Ouyang JF, Parkinson N, Petri A, Roos L, Severin J, Yasuzawa K, Abugessaisa I, et al. Functional annotation of human long noncoding RNAs via molecular phenotyping. Genome Research. PMID 32718982 DOI: 10.1101/Gr.254219.119 |
0.278 |
|
| 2014 |
Forrest AR, Kawaji H, Rehli M, Baillie JK, de Hoon MJ, Haberle V, Lassmann T, Kulakovskiy IV, Lizio M, Itoh M, Andersson R, Mungall CJ, Meehan TF, Schmeier S, ... ... Ramilowski JA, et al. A promoter-level mammalian expression atlas. Nature. 507: 462-70. PMID 24670764 DOI: 10.1038/Nature13182 |
0.267 |
|
| 2019 |
Pawlak M, Kedzierska KZ, Migdal M, Nahia KA, Ramilowski JA, Bugajski L, Hashimoto K, Marconi A, Piwocka K, Carninci P, Winata CL. Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development. Genome Research. PMID 30760547 DOI: 10.1101/Gr.244491.118 |
0.261 |
|
| 2020 |
Ramilowski JA, Yip CW, Agrawal S, Chang J, Ciani Y, Kulakovskiy IV, Mendez M, Ooi JLC, Ouyang JF, Parkinson N, Petri A, Roos L, Severin J, Yasuzawa K, Abugessaisa I, et al. Corrigendum: Functional annotation of human long noncoding RNAs via molecular phenotyping Genome Research. 30: 1377-1-1377-1. DOI: 10.1101/Gr.270330.120 |
0.257 |
|
| 2016 |
Lizio M, Harshbarger J, Abugessaisa I, Noguchi S, Kondo A, Severin J, Mungall C, Arenillas D, Mathelier A, Medvedeva YA, Lennartsson A, Drabløs F, Ramilowski JA, Rackham O, Gough J, et al. Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. Nucleic Acids Research. PMID 27794045 DOI: 10.1093/Nar/Gkw995 |
0.255 |
|
| 2017 |
Hon CC, Ramilowski JA, Harshbarger J, Bertin N, Rackham OJ, Gough J, Denisenko E, Schmeier S, Poulsen TM, Severin J, Lizio M, Kawaji H, Kasukawa T, Itoh M, Burroughs AM, et al. An atlas of human long non-coding RNAs with accurate 5' ends. Nature. PMID 28241135 DOI: 10.1038/Nature21374 |
0.238 |
|
| 2020 |
Pawlak M, Kedzierska KZ, Migdal M, Nahia KA, Ramilowski JA, Bugajski L, Hashimoto K, Marconi A, Piwocka K, Carninci P, Winata CL. Corrigendum: Dynamics of cardiomyocyte transcriptome and chromatin landscape demarcates key events of heart development Genome Research. 30: 153_2-153_2. DOI: 10.1101/Gr.260273.119 |
0.235 |
|
| 2015 |
Ramilowski JA, Goldberg T, Harshbarger J, Kloppman E, Lizio M, Satagopam VP, Itoh M, Kawaji H, Carninci P, Rost B, Forrest AR. A draft network of ligand-receptor-mediated multicellular signalling in human. Nature Communications. 6: 7866. PMID 26198319 DOI: 10.1038/Ncomms8866 |
0.235 |
|
| 2013 |
Ramilowski JA, Sawai S, Seki H, Mochida K, Yoshida T, Sakurai T, Muranaka T, Saito K, Daub CO. Glycyrrhiza uralensis transcriptome landscape and study of phytochemicals. Plant & Cell Physiology. 54: 697-710. PMID 23589666 DOI: 10.1093/Pcp/Pct057 |
0.218 |
|
| 2020 |
Alam T, Agrawal S, Severin J, Young RS, Andersson R, Arner E, Hasegawa A, Lizio M, Ramilowski JA, Abugessaisa I, Ishizu Y, Noma S, Tarui H, Taylor MS, Lassmann T, et al. Comparative transcriptomics of primary cells in vertebrates. Genome Research. PMID 32718981 DOI: 10.1101/Gr.255679.119 |
0.211 |
|
| 2017 |
Pawlak M, Kedzierska K, Bugajski L, Hashimoto K, Ramilowski J, Marconi A, Carninci P, Piwocka K, Winata C. Genomics dissection of the zebrafish heart Mechanisms of Development. 145: S143. DOI: 10.1016/J.Mod.2017.04.402 |
0.208 |
|
| 2016 |
Ramilowski JA, Goldberg T, Harshbarger J, Kloppmann E, Lizio M, Satagopam VP, Itoh M, Kawaji H, Carninci P, Rost B, Forrest AR. Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human. Nature Communications. 7: 10706. PMID 26862012 DOI: 10.1038/Ncomms10706 |
0.206 |
|
| 2015 |
Persson H, Kwon AT, Ramilowski JA, Silberberg G, Söderhäll C, Orsmark-Pietras C, Nordlund B, Konradsen JR, de Hoon MJ, Melén E, Hayashizaki Y, Hedlin G, Kere J, Daub CO. Transcriptome analysis of controlled and therapy-resistant childhood asthma reveals distinct gene expression profiles. The Journal of Allergy and Clinical Immunology. PMID 25863981 DOI: 10.1016/J.Jaci.2015.02.026 |
0.182 |
|
| 2022 |
Yip CW, Hon CC, Yasuzawa K, Sivaraman DM, Ramilowski JA, Shibayama Y, Agrawal S, Prabhu AV, Parr C, Severin J, Lan YJ, Dostie J, Petri A, Nishiyori-Sueki H, Tagami M, et al. Antisense-oligonucleotide-mediated perturbation of long non-coding RNA reveals functional features in stem cells and across cell types. Cell Reports. 41: 111893. PMID 36577377 DOI: 10.1016/j.celrep.2022.111893 |
0.14 |
|
| 2021 |
Ducoli L, Agrawal S, Hon CC, Ramilowski JA, Sibler E, Tagami M, Itoh M, Kondo N, Abugessaisa I, Hasegawa A, Kasukawa T, Suzuki H, Carninci P, Shin JW, de Hoon MJL, et al. The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background. Bmc Genomic Data. 22: 33. PMID 34521352 DOI: 10.1186/s12863-021-00992-1 |
0.11 |
|
| 2021 |
Takahashi H, Nishiyori-Sueki H, Ramilowski JA, Itoh M, Carninci P. Low Quantity Single Strand CAGE (LQ-ssCAGE) Maps Regulatory Enhancers and Promoters. Methods in Molecular Biology (Clifton, N.J.). 2351: 67-90. PMID 34382184 DOI: 10.1007/978-1-0716-1597-3_4 |
0.11 |
|
| 2020 |
Abugessaisa I, Ramilowski JA, Lizio M, Severin J, Hasegawa A, Harshbarger J, Kondo A, Noguchi S, Yip CW, Ooi JLC, Tagami M, Hori F, Agrawal S, Hon CC, Cardon M, et al. FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs. Nucleic Acids Research. PMID 33211864 DOI: 10.1093/nar/gkaa1054 |
0.097 |
|
| 2021 |
Grapotte M, Saraswat M, Bessière C, Menichelli C, Ramilowski JA, Severin J, Hayashizaki Y, Itoh M, Tagami M, Murata M, Kojima-Ishiyama M, Noma S, Noguchi S, Kasukawa T, Hasegawa A, et al. Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network. Nature Communications. 12: 3297. PMID 34078885 DOI: 10.1038/s41467-021-23143-7 |
0.086 |
|
| 2020 |
Hou R, Denisenko E, Ong HT, Ramilowski JA, Forrest ARR. Predicting cell-to-cell communication networks using NATMI. Nature Communications. 11: 5011. PMID 33024107 DOI: 10.1038/s41467-020-18873-z |
0.084 |
|
| 2022 |
Aizawa Y, Takada K, Aoyama J, Sano D, Yamanaka S, Seki M, Kuze Y, Ramilowski JA, Okuda R, Ueno Y, Nojima Y, Inayama Y, Hatakeyama H, Hatano T, Takahashi H, et al. Establishment of experimental salivary gland cancer models using organoid culture and patient-derived xenografting. Cellular Oncology (Dordrecht). PMID 36538240 DOI: 10.1007/s13402-022-00758-6 |
0.075 |
|
| 2021 |
Hashimoto M, Saito Y, Nakagawa R, Ogahara I, Takagi S, Takata S, Amitani H, Endo M, Yuki H, Ramilowski JA, Severin J, Manabe RI, Watanabe T, Ozaki K, Kaneko A, et al. Combined inhibition of XIAP and BCL2 drives maximal therapeutic efficacy in genetically diverse aggressive acute myeloid leukemia. Nature Cancer. 2: 340-356. PMID 35121960 DOI: 10.1038/s43018-021-00177-w |
0.059 |
|
| 2023 |
Severin J, Agrawal S, Ramilowski JA, Deviatiiarov R, Shin JW, Carninci P, de Hoon M. ZENBU-Reports: a graphical web-portal builder for interactive visualization and dissemination of genome-scale data. Nar Genomics and Bioinformatics. 5: lqad075. PMID 37608799 DOI: 10.1093/nargab/lqad075 |
0.048 |
|
| 2022 |
Jikuya R, Murakami K, Nishiyama A, Kato I, Furuya M, Nakabayashi J, Ramilowski JA, Hamanoue H, Maejima K, Fujita M, Mitome T, Ohtake S, Noguchi G, Kawaura S, Odaka H, et al. Single-cell transcriptomes underscore genetically distinct tumor characteristics and microenvironment for hereditary kidney cancers. Iscience. 25: 104463. PMID 35874919 DOI: 10.1016/j.isci.2022.104463 |
0.043 |
|
| 2022 |
Grapotte M, Saraswat M, Bessière C, Menichelli C, Ramilowski JA, Severin J, Hayashizaki Y, Itoh M, Tagami M, Murata M, Kojima-Ishiyama M, Noma S, Noguchi S, Kasukawa T, Hasegawa A, et al. Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network. Nature Communications. 13: 1200. PMID 35232988 DOI: 10.1038/s41467-022-28758-y |
0.039 |
|
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