Balakumar Thangaraj, Ph.D. - Related publications

2010 Biochemistry Arizona State University, Tempe, AZ, United States 
Biochemistry, General Biophysics
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Pelletier A, Chung YE, Ning Z, Wong N, Figeys D, Lavallée-Adam M. MealTime-MS: A Machine Learning-Guided Real-Time Mass Spectrometry Analysis for Protein Identification and Efficient Dynamic Exclusion. Journal of the American Society For Mass Spectrometry. PMID 32510216 DOI: 10.1021/jasms.0c00064   
2020 Lee S, Hwang S, Seo M, Shin KB, Kim KH, Park GW, Kim JY, Yoo JS, No KT. BMDMS-NP: A comprehensive ESI-MS/MS spectral library of natural compounds. Phytochemistry. 177: 112427. PMID 32535345 DOI: 10.1016/j.phytochem.2020.112427   
2020 Cleary SP, Prell JS. Distinct classes of multi-subunit heterogeneity: analysis using Fourier Transform methods and native mass spectrometry. The Analyst. PMID 32459233 DOI: 10.1039/d0an00726a   
2020 Fouquet T, Pizzala H, Rollet M, Crozet D, Giusti P, Charles L. MS-based analytical strategy for comprehensive molecular characterization of biodegradable poly(lactic-co-glycolic) acid copolymers. Journal of the American Society For Mass Spectrometry. PMID 32510219 DOI: 10.1021/jasms.0c00137   
2020 Takemori A, Butcher DS, Harman VM, Brownridge PJ, Shima K, Higo D, Ishizaki J, Hasegawa H, Suzuki J, Yamashita M, Loo JA, Loo RRO, Beynon RJ, Anderson LC, Takemori N. PEPPI-MS: polyacrylamide gel-based prefractionation for analysis of intact proteoforms and protein complexes by mass spectrometry. Journal of Proteome Research. PMID 32538093 DOI: 10.1021/acs.jproteome.0c00303   
2020 McCabe JW, Hebert MJ, Shirzadeh M, Mallis CS, Denton JK, Walker TE, Russell DH. THE IMS PARADOX: A PERSPECTIVE ON STRUCTURAL ION MOBILITY-MASS SPECTROMETRY. Mass Spectrometry Reviews. PMID 32608033 DOI: 10.1002/mas.21642   
2020 He C, Zhang Y, Li Y, Zhuo X, Li Y, Zhang C, Shi Q. In-House Standard Method for Molecular Characterization of Dissolved Organic Matter by FT-ICR Mass Spectrometry. Acs Omega. 5: 11730-11736. PMID 32478264 DOI: 10.1021/acsomega.0c01055   
2020 Jones AW, Flynn HR, Uhlmann F, Snijders AP, Touati SA. Assessing Budding Yeast Phosphoproteome Dynamics in a Time-Resolved Manner using TMT10plex Mass Tag Labeling. Star Protocols. 1: 100022. PMID 32685930 DOI: 10.1016/j.xpro.2020.100022   
2020 Chakrabarty S, Shelver WL, Smith DJ. Electrospray Ionization Rapid Screening sans LC Column: A Sensitive Method for Detection and Quantification of Chemicals in Animal Tissues and Urine. Rapid Communications in Mass Spectrometry : Rcm. e8876. PMID 32628302 DOI: 10.1002/rcm.8876   
2020 Na S, Paek E. Computational methods in mass spectrometry-based structural proteomics for studying protein structure, dynamics, and interactions. Computational and Structural Biotechnology Journal. 18: 1391-1402. PMID 32637038 DOI: 10.1016/j.csbj.2020.06.002   
2020 Dehghanizadeh M, Cheng F, Jarvis JM, Holguin FO, Brewer CE. Characterization of resin extracted from guayule (): A dataset including GC-MS and FT-ICR MS. Data in Brief. 31: 105989. PMID 32715039 DOI: 10.1016/j.dib.2020.105989   
2020 Krmpotić M, Jembrih-Simbürger D, Siketic Z, Marković N, Anghelone M, Tadić T, Plavčić D, Malloy M, Bogdanović Radović I. The identification of synthetic organic pigments (SOPs) used in modern artist's paints with Secondary Ion Mass Spectrometry with MeV ions. Analytical Chemistry. PMID 32484333 DOI: 10.1021/acs.analchem.0c01630   
2020 Ray J, Kruse A, Ozer A, Kajitani T, Johnson R, MacCoss M, Heck M, Lis JT. RNA aptamer capture of macromolecular complexes for mass spectrometry analysis. Nucleic Acids Research. PMID 32609809 DOI: 10.1093/nar/gkaa542   
2020 Rouby G, Tran NT, Leblanc Y, Taverna M, Bihoreau N. Investigation of monoclonal antibody dimers in a final formulated drug by separation techniques coupled to native mass spectrometry. Mabs. 12: e1781743. PMID 32633190 DOI: 10.1080/19420862.2020.1781743   
2020 Bults P, Sonesson A, Knutsson M, Bischoff R, van de Merbel NC. Intact protein quantification in biological samples by liquid chromatography - high-resolution mass spectrometry: somatropin in rat plasma. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1144: 122079. PMID 32247186 DOI: 10.1016/j.jchromb.2020.122079   
2020 Watts E, Williams JD, Miesbauer LJ, Bruncko M, Brodbelt JS. Comprehensive Middle-Down Mass Spectrometry Characterization of an Antibody-Drug Conjugate by Combined Ion Activation Methods. Analytical Chemistry. PMID 32567851 DOI: 10.1021/acs.analchem.0c01232   
2020 Sanda M, Benicky J, Goldman R. Low Collision Energy Fragmentation in Structure-Specific Glycoproteomics Analysis. Analytical Chemistry. 92: 8262-8267. PMID 32441515 DOI: 10.1021/acs.analchem.0c00519   
2020 Li W, Yao YN, Wu L, Wang L, Hu B. Contactless electrospray ionization mass spectrometry for direct detection of analytes in living organisms. Journal of Mass Spectrometry : Jms. e4539. PMID 32677755 DOI: 10.1002/jms.4539   
2020 Sentandreu E, Fuente-García C, Navarro JL, Sentandreu MA. A straightforward gel-free proteomics pipeline assisted by liquid isoelectric focusing (OFFGEL) and mass spectrometry analysis to study bovine meat proteome. Food Science and Technology International = Ciencia Y Tecnologia De Los Alimentos Internacional. 1082013220929144. PMID 32600057 DOI: 10.1177/1082013220929144   
2020 Tanaka YK, Iida R, Takada S, Kubota T, Yamanaka M, Sugiyama N, Abdelnour Y, Ogra Y. Quantitative elemental analysis of a single cell using inductively coupled plasma-mass spectrometry in fast time-resolved analysis mode. Chembiochem : a European Journal of Chemical Biology. PMID 32662172 DOI: 10.1002/cbic.202000358   
2020 Sew YS, Aizat WM, Razak MSFA, Zainal-Abidin RA, Simoh S, Abu-Bakar N. Comprehensive proteomics data on whole rice grain of selected pigmented and non-pigmented rice varieties using SWATH-MS approach. Data in Brief. 31: 105927. PMID 32642524 DOI: 10.1016/j.dib.2020.105927   
2020 Allison TM, Barran PE, Cianférani S, Degiacomi MT, Gabelica V, Grandori R, Marklund EG, Menneteau T, Migas LG, Politis A, Sharon M, Sobott F, Thalassinos K, Benesch JLP. Computational strategies and challenges for using native ion mobility mass spectrometry in biophysics and structural biology. Analytical Chemistry. PMID 32667808 DOI: 10.1021/acs.analchem.9b05791   
2020 Zhang Y, Tang Y, Tan C, Xu W. Toward Nanopore Electrospray Mass Spectrometry: Nanopore Effects in the Analysis of Bacteria. Acs Central Science. 6: 1001-1008. PMID 32607447 DOI: 10.1021/acscentsci.0c00622   
2020 Lu W, Xing X, Wang L, Chen L, Zhang S, McReynolds MR, Rabinowitz JD. Improved annotation of untargeted metabolomics data through buffer modifications that shift adduct mass and intensity. Analytical Chemistry. PMID 32614575 DOI: 10.1021/acs.analchem.0c00985   
2020 Sarvin B, Lagziel S, Sarvin N, Mukha D, Kumar P, Aizenshtein E, Shlomi T. Fast and sensitive flow-injection mass spectrometry metabolomics by analyzing sample-specific ion distributions. Nature Communications. 11: 3186. PMID 32581242 DOI: 10.1038/s41467-020-17026-6   
2020 Cao XH, Fan X, Xia JL, Mo WL, Nulahong A, Zhao YP, Zhao W, Ma FY, Wei XY. Sequential thermal dissolution of two low-rank coals and characterization of their structure by high-performance liquid chromatography/time-of-flight mass spectrometry and gas chromatography/mass spectrometry. Rapid Communications in Mass Spectrometry : Rcm. e8887. PMID 32656863 DOI: 10.1002/rcm.8887   
2020 Ren Y, Ding Y, Meng F, Jiang L, Li H, Huang J, Yu P, Qiu Z. Quantification of CYP2E1 in rat liver by UPLC-MS/MS-based targeted proteomics assay: a novel approach for enzyme activity assessment. Analytical and Bioanalytical Chemistry. PMID 32588109 DOI: 10.1007/s00216-020-02757-8   
2020 Yun G, Park JM, Duong VA, Mok JH, Jeon J, Nam O, Lee J, Jin E, Lee H. Proteomic Profiling of Using a Three-Dimensional Separation Method Combined with Tandem Mass Spectrometry. Molecules (Basel, Switzerland). 25. PMID 32630776 DOI: 10.3390/molecules25133028   
2020 López-Fernández O, Domínguez R, Pateiro M, Munekata PES, Rocchetti G, Lorenzo JM. Determination of Polyphenols Using Liquid Chromatography-Tandem Mass Spectrometry Technique (LC-MS/MS): A Review. Antioxidants (Basel, Switzerland). 9. PMID 32498428 DOI: 10.3390/antiox9060479   
2020 Yu F, Haynes SE, Teo GC, Avtonomov DM, Polasky DA, Nesvizhskii AI. Fast quantitative analysis of timsTOF PASEF data with MSFragger and IonQuant. Molecular & Cellular Proteomics : McP. PMID 32616513 DOI: 10.1074/mcp.TIR120.002048   
2020 Rosa TR, Folli GS, Pacheco WLS, Castro MP, Romão W, Filgueiras PR. DropMS: Petroleomics Data Treatment Based in Web Server for High-Resolution Mass Spectrometry. Journal of the American Society For Mass Spectrometry. PMID 32519862 DOI: 10.1021/jasms.0c00109   
2020 Kim E, Kim J, Choi I, Lee J, Yeo WS. Organic matrix-free imaging mass spectrometry. Bmb Reports. PMID 32580835   
2020 Zhu R, Huang Y, Zhao J, Zhong J, Mechref Y. Isomeric Separation of N-Glycopeptides Derived from Glycoproteins by Porous Graphitic Carbon (PGC) LC-MS/MS. Analytical Chemistry. PMID 32544320 DOI: 10.1021/acs.analchem.0c00668   
2020 Gross JH. From the discovery of field ionization to field desorption and liquid injection field desorption/ionization-mass spectrometry-A journey from principles and applications to a glimpse into the future. European Journal of Mass Spectrometry (Chichester, England). 26: 241-273. PMID 32605392 DOI: 10.1177/1469066720939399   
2020 Fraisier-Vannier O, Chervin J, Cabanac G, Puech-Pages V, Fournier S, Durand V, Amiel A, Andre O, Benamar OA, Tsugawa H, Dumas B, Marti G. MS-CleanR: A feature-filtering workflow for untargeted LC-MS based metabolomics. Analytical Chemistry. PMID 32589017 DOI: 10.1021/acs.analchem.0c01594   
2020 Narayanaswamy P, Teo G, Ow JR, Lau A, Kaldis P, Tate S, Choi H. MetaboKit: a comprehensive data extraction tool for untargeted metabolomics. Molecular Omics. PMID 32519713 DOI: 10.1039/d0mo00030b   
2020 Holmes DT, Romney MG, Angel P, DeMarco ML. Proteomic applications in pathology and laboratory medicine: Present state and future prospects. Clinical Biochemistry. PMID 32442429 DOI: 10.1016/j.clinbiochem.2020.05.007   
2020 Bruderer T, Gaugg MT, Cappellin L, Lopez-Hilfiker F, Hutterli MA, Perkins N, Zenobi R, Moeller A. Detection of volatile organic compounds with SESI and PTR high-resolution mass spectrometry: a feature comparison. Journal of the American Society For Mass Spectrometry. PMID 32584571 DOI: 10.1021/jasms.0c00059   
2020 Weis C, Horn M, Rieck B, Cuénod A, Egli A, Borgwardt K. Topological and kernel-based microbial phenotype prediction from MALDI-TOF mass spectra. Bioinformatics (Oxford, England). 36: i30-i38. PMID 32657381 DOI: 10.1093/bioinformatics/btaa429   
2020 Xue J, Domingo-Almenara X, Guijas C, Palermo A, Rinschen MM, Isbell J, Benton HP, Siuzdak G. Enhanced in-Source Fragmentation Annotation Enables Novel Data Independent Acquisition and Autonomous METLIN Molecular Identification. Analytical Chemistry. 92: 6051-6059. PMID 32242660 DOI: 10.1021/acs.analchem.0c00409   
2020 Lyu J, Liu Y, McCabe JW, Schrecke S, Fang L, Russell DH, Laganowsky A. Discovery of potent charge-reducing molecules for native ion mobility mass spectrometry studies. Analytical Chemistry. PMID 32672445 DOI: 10.1021/acs.analchem.0c01826   
2020 Song Y, Vu HS, Shiva S, Fruehan C, Roth MR, Tamura P, Welti R. A Lipidomic Approach to Identify Cold-Induced Changes in Arabidopsis Membrane Lipid Composition. Methods in Molecular Biology (Clifton, N.J.). 2156: 187-202. PMID 32607983 DOI: 10.1007/978-1-0716-0660-5_14   
2020 Sun Q, Fan TW, Lane AN, Higashi RM. Applications of Chromatography-Ultra High-Resolution MS for Stable Isotope-Resolved Metabolomics (SIRM) Reconstruction of Metabolic Networks. Trends in Analytical Chemistry : Trac. 123. PMID 32483395 DOI: 10.1016/j.trac.2019.115676   
2020 Jing L, Wang D, He M, Xu Y, Xie M, Song Y, Xu H, Li H. An efficient broad spectrum-driven carbon and oxygen co-doped g-CN for the photodegradation of endocrine disrupting: Mechanism, degradation pathway, DFT calculation and toluene selective oxidation. Journal of Hazardous Materials. 401: 123309. PMID 32652416 DOI: 10.1016/j.jhazmat.2020.123309   
2020 Tayri-Wilk T, Slavin M, Zamel J, Blass A, Cohen S, Motzik A, Sun X, Shalev DE, Ram O, Kalisman N. Mass spectrometry reveals the chemistry of formaldehyde cross-linking in structured proteins. Nature Communications. 11: 3128. PMID 32561732 DOI: 10.1038/s41467-020-16935-w   
2020 Ji H, Deng H, Lu H, Zhang Z. Predicting a Molecular Fingerprint from an Electron Ionization Mass Spectrum with Deep Neural Networks. Analytical Chemistry. PMID 32584545 DOI: 10.1021/acs.analchem.0c01450   
2020 Fu L, Li Z, Liu K, Tian C, He J, He J, He F, Xu P, Yang J. A quantitative thiol reactivity profiling platform to analyze redox and electrophile reactive cysteine proteomes. Nature Protocols. PMID 32690958 DOI: 10.1038/s41596-020-0352-2   
2020 Tada I, Chaleckis R, Tsugawa H, Meister I, Zhang P, Lazarinis N, Dahlén B, Wheelock CE, Arita M. Correlation-based Deconvolution (CorrDec) to generate high-quality MS2 spectra from data-independent acquisition in multi-sample studies. Analytical Chemistry. PMID 32648737 DOI: 10.1021/acs.analchem.0c01980   
2020 Schopfer LM, Lockridge O. Signature Ions in MS/MS Spectra for Dansyl-Aminohexyl-QQIV Adducts on Lysine. Molecules (Basel, Switzerland). 25. PMID 32521655 DOI: 10.3390/molecules25112659