Ivan O. Rivera-Torres, Ph.D. - Related publications

2004 Yeshiva University, New York, NY, United States 
Biochemistry, Molecular Biology
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Tang C, Gong Z. Integrating non-NMR distance restraints to augment NMR depiction of protein structure and dynamics. Journal of Molecular Biology. PMID 32044345 DOI: 10.1016/j.jmb.2020.01.023   
2020 Purslow JA, Khatiwada B, Bayro MJ, Venditti V. NMR Methods for Structural Characterization of Protein-Protein Complexes. Frontiers in Molecular Biosciences. 7: 9. PMID 32047754 DOI: 10.3389/fmolb.2020.00009   
2020 Novakovic M, Olsen GL, Pintér G, Hymon D, Fürtig B, Schwalbe H, Frydman L. A 300-fold enhancement of imino nucleic acid resonances by hyperpolarized water provides a new window for probing RNA refolding by 1D and 2D NMR. Proceedings of the National Academy of Sciences of the United States of America. PMID 31949004 DOI: 10.1073/pnas.1916956117   
2020 Neira JL, Ortore MG, Florencio FJ, Muro-Pastor MI, Rizzuti B. Dynamics of the intrinsically disordered inhibitor IF7 of glutamine synthetase in isolation and in complex with its partner. Archives of Biochemistry and Biophysics. 108303. PMID 32074499 DOI: 10.1016/j.abb.2020.108303   
2020 Bai J, Wang J, Ravula T, Im SC, Anantharamaiah GM, Waskell L, Ramamoorthy A. Expression, purification, and functional reconstitution of F-labeled cytochrome b5 in peptide nanodiscs for NMR studies. Biochimica Et Biophysica Acta. Biomembranes. 183194. PMID 31953231 DOI: 10.1016/j.bbamem.2020.183194   
2020 Fargason T, Wang T, De Silva NIU, Zhang Z, McKelvey H, Knapp T, Zaharias S, Zhang J. Amide additives improve RDC measurements in polyacrylamide. Journal of Biomolecular Nmr. PMID 32056065 DOI: 10.1007/s10858-020-00305-1   
2020 Dahal SR, Lewellen JL, Chaudhary BP, Mohanty S. H, C, and N resonance assignment and secondary structure of the pheromone-binding protein2 from the agricultural pest Ostrinia furnacalis (OfurPBP2). Biomolecular Nmr Assignments. PMID 31975054 DOI: 10.1007/s12104-020-09930-1   
2020 Li L, Palmer SO, Gomez EA, Mendiola F, Wang T, Bullard JM, Zhang Y. H, C and N resonance assignments of translation initiation factor 3 from Pseudomonas aeruginosa. Biomolecular Nmr Assignments. PMID 31902070 DOI: 10.1007/s12104-020-09926-x   
2020 Kwon NY, Kim Y, Lee JO. The application of helix fusion methods in structural biology. Current Opinion in Structural Biology. 60: 110-116. PMID 31968282 DOI: 10.1016/j.sbi.2019.12.007   
2020 Barnes CA, Shen Y, Ying J, Bax A. Modulating the Stiffness of the Myosin VI Single α-Helical Domain. Biophysical Journal. PMID 32049057 DOI: 10.1016/j.bpj.2020.01.003   
2020 Ansari MZ, Swaminathan R. Structure and Dynamics at N and C-terminal regions of Intrinsically Disordered Human c-Myc PEST Degron reveal a pH-induced transition. Proteins. PMID 31999378 DOI: 10.1002/prot.25880   
2020 Sharma R, Sagurthi SR, Narahari Sastry G. Elucidating the preference of dimeric over monomeric form for thermal stability of Thermus thermophilus isopropylmalate dehydrogenase: A molecular dynamics perspective. Journal of Molecular Graphics & Modelling. 96: 107530. PMID 31986322 DOI: 10.1016/j.jmgm.2020.107530   
2020 Pantoja-Uceda D, Oroz J, Fernández C, de Alba E, Giraldo R, Laurents DV. Conformational Priming of RepA-WH1 for Functional Amyloid Conversion Detected by NMR Spectroscopy. Structure (London, England : 1993). PMID 31918960 DOI: 10.1016/j.str.2019.12.007   
2020 Waudby CA, Ouvry M, Davis B, Christodoulou J. Two-dimensional NMR lineshape analysis of single, multiple, zero and double quantum correlation experiments. Journal of Biomolecular Nmr. PMID 31915980 DOI: 10.1007/s10858-019-00297-7   
2020 Ratha BN, Kar RK, Bednarikova Z, Gazova Z, Kotler SA, Raha S, De S, Maiti NC, Bhunia A. Molecular Details of A Salt-Bridge and Its Role in Insulin Fibrillation by NMR and Raman Spectroscopic Analysis. The Journal of Physical Chemistry. B. PMID 31958230 DOI: 10.1021/acs.jpcb.9b10349   
2020 Torabifard H, Panahi A, Brooks CL. M2 amphipathic helices facilitate pH-dependent conformational transition in influenza A virus. Proceedings of the National Academy of Sciences of the United States of America. PMID 32015120 DOI: 10.1073/pnas.1913385117   
2020 Hamann F, Schmitt A, Favretto F, Hofele R, Neumann P, Xiang S, Urlaub H, Zweckstetter M, Ficner R. Structural analysis of the intrinsically disordered splicing factor Spp2 and its binding to the DEAH-box ATPase Prp2. Proceedings of the National Academy of Sciences of the United States of America. PMID 31974312 DOI: 10.1073/pnas.1907960117   
2020 Shaheen S, Barrett KF, Subramanian S, Arnold SLM, Laureanti JA, Myler PJ, Van Voorhis WC, Buchko GW. Solution structure for an Encephalitozoon cuniculi adrenodoxin-like protein in the oxidized state. Protein Science : a Publication of the Protein Society. PMID 31912584 DOI: 10.1002/pro.3818   
2020 Fu R, Miao Y, Qin H, Cross TA. Observation of the Imidazole-Imidazolium Hydrogen Bonds Responsible for Selective Proton Conductance in the Influenza A M2 Channel. Journal of the American Chemical Society. PMID 31970982 DOI: 10.1021/jacs.9b09985   
2020 Yang TJ, Chang YC, Ko TP, Draczkowski P, Chien YC, Chang YC, Wu KP, Khoo KH, Chang HW, Hsu SD. Cryo-EM analysis of a feline coronavirus spike protein reveals a unique structure and camouflaging glycans. Proceedings of the National Academy of Sciences of the United States of America. PMID 31900356 DOI: 10.1073/pnas.1908898117   
2020 Xu X, Port A, Wiebeler C, Zhao KH, Schapiro I, Gärtner W. Structural elements regulating the photochromicity in a cyanobacteriochrome. Proceedings of the National Academy of Sciences of the United States of America. PMID 31964827 DOI: 10.1073/pnas.1910208117   
2020 Alderson TR, Ying J, Bax A, Benesch JLP, Baldwin AJ. Conditional disorder in small heat-shock proteins. Journal of Molecular Biology. PMID 32081587 DOI: 10.1016/j.jmb.2020.02.003   
2020 Hayashi T, Yasuda S, Suzuki K, Akiyama T, Kanehara K, Kojima K, Tanabe M, Kato R, Senda T, Sudo Y, Murata T, Kinoshita M. How Does a Microbial Rodhopsin RxR Realize Its Exceptionally High Thermostability with the Proton-Pumping Function Being Retained? The Journal of Physical Chemistry. B. PMID 31955569 DOI: 10.1021/acs.jpcb.9b10700   
2020 Schiltz CJ, Adams MC, Chappie JS. The full-length structure of Thermus scotoductus OLD defines the ATP hydrolysis properties and catalytic mechanism of Class 1 OLD family nucleases. Nucleic Acids Research. PMID 32009148 DOI: 10.1093/nar/gkaa059   
2020 Imai S, Yokomizo T, Kofuku Y, Shiraishi Y, Ueda T, Shimada I. Structural equilibrium underlying ligand-dependent activation of β-adrenoreceptor. Nature Chemical Biology. PMID 31959965 DOI: 10.1038/s41589-019-0457-5   
2020 Al-Maharik N, Cordes DB, Slawin AMZ, Bühl M, O'Hagan D. Probing the helical integrity of multivicinal all-syn-fluoro alkanes. Organic & Biomolecular Chemistry. PMID 31942902 DOI: 10.1039/c9ob02647a   
2020 Láng A, Jákli I, Enyedi KN, Mező G, Menyhárd DK, Perczel A. Off-pathway 3D-structure provides protection against spontaneous Asn/Asp isomerization: shielding proteins Achilles heel. Quarterly Reviews of Biophysics. 53: e2. PMID 32000865 DOI: 10.1017/S003358351900009X   
2020 Mendes LFS, Batista MRB, Judge PJ, Watts A, Redfield C, Costa-Filho AJ. Conformational flexibility of GRASP proteins and their constituent PDZ subdomains reveals structural basis of their promiscuous interactome. The Febs Journal. PMID 31920006 DOI: 10.1111/febs.15206   
2020 Swarbrick JD, Karas JA, Li J, Velkov T. Structure of micelle bound cationic peptides by NMR spectroscopy using a lanthanide shift reagent. Chemical Communications (Cambridge, England). PMID 32037418 DOI: 10.1039/c9cc09207b   
2020 Flynn JD, Gimmen MY, Dean DN, Lacy SM, Lee JC. Terminal Alkynes as Raman Probes of α-Synuclein in Solution and in Cells. Chembiochem : a European Journal of Chemical Biology. PMID 31960993 DOI: 10.1002/cbic.202000026   
2020 Shafiq A, Campbell LJ, Owen D, Mott HR. NMR resonance assignments for the active and inactive conformations of the small G protein RalA. Biomolecular Nmr Assignments. PMID 31916136 DOI: 10.1007/s12104-019-09925-7   
2020 Miura Y. NMR studies on the conformation, stability and dynamics of alamethicin in methanol. European Biophysics Journal : Ebj. PMID 31912177 DOI: 10.1007/s00249-019-01418-8   
2020 McMahon CM, Isabella CR, Windsor IW, Kosma P, Raines RT, Kiessling LL. Stereoelectronic Effects Impact Glycan Recognition. Journal of the American Chemical Society. PMID 31930911 DOI: 10.1021/jacs.9b11699   
2020 Romero PR, Kobayashi N, Wedell JR, Baskaran K, Iwata T, Yokochi M, Maziuk D, Yao H, Fujiwara T, Kurusu G, Ulrich EL, Hoch JC, Markley JL. BioMagResBank (BMRB) as a Resource for Structural Biology. Methods in Molecular Biology (Clifton, N.J.). 2112: 187-218. PMID 32006287 DOI: 10.1007/978-1-0716-0270-6_14   
2020 Mio T, Ikemoto K, Sato S, Isobe H. Synthesis of a hemispherical geodesic phenine framework via a polygon assembling strategy. Angewandte Chemie (International Ed. in English). PMID 31965681 DOI: 10.1002/anie.201915509   
2020 Keller L, Canuto KM, Liu C, Suzuki BM, Almaliti J, Sikandar A, Naman CB, Glukhov E, Luo D, Duggan BM, Luesch H, Koehnke J, O'Donoghue AJ, Gerwick WH. Tutuilamides A-C: Vinyl-Chloride Containing Cyclodepsipeptides from Marine Cyanobacteria with Potent Elastase Inhibitory Properties. Acs Chemical Biology. PMID 31935054 DOI: 10.1021/acschembio.9b00992   
2020 Hardenbrook NJ, Liu S, Zhou K, Ghosal K, Hong Zhou Z, Krantz BA. Atomic structures of anthrax toxin protective antigen channels bound to partially unfolded lethal and edema factors. Nature Communications. 11: 840. PMID 32047164 DOI: 10.1038/s41467-020-14658-6   
2020 Cui H, Zhu X, Huo Z, Liao B, Huang J, Wang Z, Song C, Hu X, Fang J. A β-glucan from Grifola frondosa effectively delivers therapeutic oligonucleotide into cells via dectin-1 receptor and attenuates TNFα gene expression. International Journal of Biological Macromolecules. PMID 31982530 DOI: 10.1016/j.ijbiomac.2020.01.236   
2020 Schumacher MA, Ohashi T, Corbin L, Erickson HP. High-resolution crystal structures of Escherichia coli FtsZ bound to GDP and GTP. Acta Crystallographica. Section F, Structural Biology Communications. 76: 94-102. PMID 32039891 DOI: 10.1107/S2053230X20001132   
2020 Kuwabara N, Imae R, Manya H, Tanaka T, Mizuno M, Tsumoto H, Kanagawa M, Kobayashi K, Toda T, Senda T, Endo T, Kato R. Crystal structures of fukutin-related protein (FKRP), a ribitol-phosphate transferase related to muscular dystrophy. Nature Communications. 11: 303. PMID 31949166 DOI: 10.1038/s41467-019-14220-z   
2020 Vedithi SC, Rodrigues CHM, Portelli S, Skwark MJ, Das M, Ascher DB, Blundell TL, Malhotra S. Computational saturation mutagenesis to predict structural consequences of systematic mutations in the beta subunit of RNA polymerase in . Computational and Structural Biotechnology Journal. 18: 271-286. PMID 32042379 DOI: 10.1016/j.csbj.2020.01.002   
2020 Gregory KS, Liu SM, Acharya KR. Crystal structure of botulinum neurotoxin subtype A3 cell binding domain in complex with GD1a co-receptor ganglioside. Febs Open Bio. PMID 31945264 DOI: 10.1002/2211-5463.12790   
2020 Gutierrez C, Chemmama IE, Mao H, Yu C, Echeverria I, Block SA, Rychnovsky SD, Zheng N, Sali A, Huang L. Structural dynamics of the human COP9 signalosome revealed by cross-linking mass spectrometry and integrative modeling. Proceedings of the National Academy of Sciences of the United States of America. PMID 32034103 DOI: 10.1073/pnas.1915542117   
2020 Bansal R, Haque A, Hassan I, Ethayathulla AS, Kaur P. Structural and conformational behavior of MurE ligase from Salmonella enterica serovar Typhi at different temperature and pH conditions. International Journal of Biological Macromolecules. PMID 32018007 DOI: 10.1016/j.ijbiomac.2020.01.306   
2020 Murray DT, Tycko R. Side Chain Hydrogen-Bonding Interactions within Amyloid-like Fibrils Formed by the Low-Complexity Domain of FUS: Evidence from Solid State Nuclear Magnetic Resonance Spectroscopy. Biochemistry. PMID 31895552 DOI: 10.1021/acs.biochem.9b00892   
2020 Ghosh C, Jana B. Inter-Subunit Assisted Folding of DNA Binding Domains in Dimeric Catabolite Activator Protein. The Journal of Physical Chemistry. B. PMID 31999927 DOI: 10.1021/acs.jpcb.9b10941   
2020 Taylor WR. Exploring Protein Fold Space. Biomolecules. 10. PMID 32012781 DOI: 10.3390/biom10020193   
2020 Jagessar KL, Claxton DP, Stein RA, Mchaourab HS. Sequence and structural determinants of ligand-dependent alternating access of a MATE transporter. Proceedings of the National Academy of Sciences of the United States of America. PMID 32075917 DOI: 10.1073/pnas.1917139117   
2020 Zhuo XF, Wang J, Zhang J, Jiang LL, Hu HY, Lu JX. Solid-state NMR reveals the structural transformation of the TDP-43 amyloidogenic region upon fibrillation. Journal of the American Chemical Society. PMID 32003979 DOI: 10.1021/jacs.9b10736   
2020 Li W. Residue-Residue Mutual Work Analysis of Retinal-Opsin Interaction in Rhodopsin: Implications for Protein-Ligand Binding. Journal of Chemical Theory and Computation. PMID 31972074 DOI: 10.1021/acs.jctc.9b01035