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Mina Rho, Ph.D. - Publications

Affiliations: 
2009 Cognitive Science Indiana University, Bloomington, Bloomington, IN, United States 
Area:
Bioinformatics Biology
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18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Jeon J, Kang S, Hur JK, Rho M. Metagenomic characterization of sphingomyelinase C in the microbiome of humans and environments. Frontiers in Cellular and Infection Microbiology. 12: 1015706. PMID 36467737 DOI: 10.3389/fcimb.2022.1015706  0.3
2022 Gwak HJ, Rho M. ViBE: a hierarchical BERT model to identify eukaryotic viruses using metagenome sequencing data. Briefings in Bioinformatics. PMID 35667011 DOI: 10.1093/bib/bbac204  0.318
2021 Jeon J, Lee J, Jung SM, Shin JH, Song WJ, Rho M. Genomic Determinants Encode the Reactivity and Regioselectivity of Flavin-Dependent Halogenases in Bacterial Genomes and Metagenomes. Msystems. e0005321. PMID 34042468 DOI: 10.1128/mSystems.00053-21  0.387
2018 Bae J, Lee KW, Islam MN, Yim HS, Park H, Rho M. iMGEins: detecting novel mobile genetic elements inserted in individual genomes. Bmc Genomics. 19: 944. PMID 30563451 DOI: 10.1186/s12864-018-5290-9  0.381
2017 Kim Y, Koh I, Young Lim M, Chung WH, Rho M. Pan-genome analysis of Bacillus for microbiome profiling. Scientific Reports. 7: 10984. PMID 28887527 DOI: 10.1038/s41598-017-11385-9  0.318
2016 Lee H, Lee M, Mohammed Ismail W, Rho M, Fox GC, Oh S, Tang H. MGEScan: a Galaxy-based system for identifying retrotransposons in genomes. Bioinformatics (Oxford, England). PMID 27153595 DOI: 10.1093/Bioinformatics/Btw157  0.473
2013 Zhuo X, Rho M, Feschotte C. Genome-wide characterization of endogenous retroviruses in the bat Myotis lucifugus reveals recent and diverse infections. Journal of Virology. 87: 8493-501. PMID 23720713 DOI: 10.1128/Jvi.00892-13  0.386
2013 Zhang Q, Rho M, Tang H, Doak TG, Ye Y. CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes. Genome Biology. 14: R40. PMID 23628424 DOI: 10.1186/Gb-2013-14-4-R40  0.497
2012 Rho M, Wu YW, Tang H, Doak TG, Ye Y. Diverse CRISPRs evolving in human microbiomes. Plos Genetics. 8: e1002441. PMID 22719260 DOI: 10.1371/Journal.Pgen.1002441  0.526
2012 Wu YW, Rho M, Doak TG, Ye Y. Oral spirochetes implicated in dental diseases are widespread in normal human subjects and carry extremely diverse integron gene cassettes. Applied and Environmental Microbiology. 78: 5288-96. PMID 22635997 DOI: 10.1128/Aem.00564-12  0.426
2012 Hughes A, Ruan Y, Ekanayake S, Bae SH, Dong Q, Rho M, Qiu J, Fox G. Interpolative multidimensional scaling techniques for the identification of clusters in very large sequence sets. Bmc Bioinformatics. 13: S9. PMID 22536872 DOI: 10.1186/1471-2105-13-S2-S9  0.367
2011 Lynch M, Bobay LM, Catania F, Gout JF, Rho M. The repatterning of eukaryotic genomes by random genetic drift. Annual Review of Genomics and Human Genetics. 12: 347-66. PMID 21756106 DOI: 10.1146/Annurev-Genom-082410-101412  0.381
2011 Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, ... ... Rho M, et al. The ecoresponsive genome of Daphnia pulex. Science (New York, N.Y.). 331: 555-61. PMID 21292972 DOI: 10.1126/Science.1197761  0.52
2010 Rho M, Tang H, Ye Y. FragGeneScan: predicting genes in short and error-prone reads. Nucleic Acids Research. 38: e191. PMID 20805240 DOI: 10.1093/Nar/Gkq747  0.539
2010 Rho M, Schaack S, Gao X, Kim S, Lynch M, Tang H. LTR retroelements in the genome of Daphnia pulex. Bmc Genomics. 11: 425. PMID 20618961 DOI: 10.1186/1471-2164-11-425  0.579
2009 Rho M, Zhou M, Gao X, Kim S, Tang H, Lynch M. Independent mammalian genome contractions following the KT boundary. Genome Biology and Evolution. 1: 2-12. PMID 20333172 DOI: 10.1093/Gbe/Evp007  0.557
2009 Rho M, Tang H. MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes. Nucleic Acids Research. 37: e143. PMID 19762481 DOI: 10.1093/Nar/Gkp752  0.555
2007 Rho M, Choi JH, Kim S, Lynch M, Tang H. De novo identification of LTR retrotransposons in eukaryotic genomes Bmc Genomics. 8. PMID 17407597 DOI: 10.1186/1471-2164-8-90  0.552
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