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Michela Taufer - Publications

Affiliations: 
2007-2018 Department of Computer and Information Sciences University of Delaware, Newark, DE, United States 
 2018- Electrical Engineering & Computer Science University of Tennessee, Knoxville, Knoxville, TN, United States 
Area:
Computer Science
Website:
https://www.eecs.utk.edu/people/faculty/dr-michela-taufer/
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36 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Gao T, Guo Y, Zhang B, Cicotti P, Lu Y, Balaji P, Taufer M. Memory-Efficient and Skew-Tolerant MapReduce Over MPI for Supercomputing Systems Ieee Transactions On Parallel and Distributed Systems. 31: 2734-2748. DOI: 10.1109/Tpds.2019.2932066  0.53
2020 Ahn DH, Bass N, Chu A, Garlick J, Grondona M, Herbein S, Ingólfsson HI, Koning J, Patki T, Scogland TRW, Springmeyer B, Taufer M. Flux: Overcoming scheduling challenges for exascale workflows Future Generation Computer Systems. 110: 202-213. DOI: 10.1016/J.Future.2020.04.006  0.68
2017 Johnston T, Zhang B, Liwo A, Crivelli S, Taufer M. In situ data analytics and indexing of protein trajectories. Journal of Computational Chemistry. PMID 28093787 DOI: 10.1002/Jcc.24729  0.575
2017 Searles R, Herbein S, Johnston T, Taufer M, Chandrasekaran S. Creating a portable, high-level graph analytics paradigm for compute and data-intensive applications International Journal of High Performance Computing and Networking. 13: 105-118. DOI: 10.1504/Ijhpcn.2017.10007922  0.668
2017 Deelman E, Peterka T, Altintas I, Carothers CD, van Dam KK, Moreland K, Parashar M, Ramakrishnan L, Taufer M, Vetter J. The future of scientific workflows The International Journal of High Performance Computing Applications. 32: 159-175. DOI: 10.1177/1094342017704893  0.345
2017 Zhang B, Estrada T, Cicotti P, Balaji P, Taufer M. Enabling scalable and accurate clustering of distributed ligand geometries on supercomputers Parallel Computing. 63: 38-60. DOI: 10.1016/j.parco.2017.02.005  0.506
2016 Stodden V, McNutt M, Bailey DH, Deelman E, Gil Y, Hanson B, Heroux MA, Ioannidis JP, Taufer M. Enhancing reproducibility for computational methods. Science (New York, N.Y.). 354: 1240-1241. PMID 27940837 DOI: 10.1126/Science.Aah6168  0.351
2016 Herbein S, Dusia A, Landwehr A, McDaniel S, Monsalve J, Yang Y, Seelam SR, Taufer M. Resource management for running HPC applications in container clouds Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9697: 261-278. DOI: 10.1007/978-3-319-41321-1_14  0.305
2015 Javadi B, Zhang B, Taufer M. Bandwidth Modeling in Large Distributed Systems for Big Data Applications Parallel and Distributed Computing, Applications and Technologies, Pdcat Proceedings. 2015: 21-27. DOI: 10.1109/PDCAT.2014.12  0.558
2015 Zhang B, Estrada T, Cicotti P, Balaji P, Taufer M. Accurate scoring of drug conformations at the extreme scale Proceedings - 2015 Ieee/Acm 15th International Symposium On Cluster, Cloud, and Grid Computing, Ccgrid 2015. 817-822. DOI: 10.1109/CCGrid.2015.94  0.527
2014 Schlachter S, Herbein S, Ou S, Logan JS, Patel S, Taufer M. Pursuing coordinated trajectory progression and efficient resource utilization of GPU-enabled molecular dynamics simulations Ieee Design and Test. 31: 40-50. DOI: 10.1109/Mdat.2013.2284203  0.674
2014 Zhang B, Estrada T, Cicotti P, Taufer M. Enabling in-situ data analysis for large protein-folding trajectory datasets Proceedings of the International Parallel and Distributed Processing Symposium, Ipdps. 221-230. DOI: 10.1109/IPDPS.2014.33  0.538
2013 Yehdego DT, Zhang B, Kodimala VK, Johnson KL, Taufer M, Leung MY. Secondary Structure Predictions for Long RNA Sequences Based on Inversion Excursions and MapReduce. Ieee International Symposium On Parallel & Distributed Processing, Workshops and Phd Forum : [Proceedings]. Ieee International Symposium On Parallel & Distributed Processing, Workshops and Phd Forum. 2013: 520-529. PMID 26023357 DOI: 10.1109/IPDPSW.2013.109  0.492
2013 Zhang B, Yehdego DT, Johnson KL, Leung MY, Taufer M. Enhancement of accuracy and efficiency for RNA secondary structure prediction by sequence segmentation and MapReduce. Bmc Structural Biology. 13: S3. PMID 24564983 DOI: 10.1186/1472-6807-13-S1-S3  0.531
2013 DiMarco J, Taufer M. Performance impact of dynamic parallelism on different clustering algorithms Proceedings of Spie - the International Society For Optical Engineering. 8752. DOI: 10.1117/12.2018069  0.393
2013 Taufer M, Ganesan N, Patel S. GPU-enabled macromolecular simulation: Challenges and opportunities Computing in Science and Engineering. 15: 56-65. DOI: 10.1109/Mcse.2012.42  0.366
2013 Schlachter S, Herbein S, Taufer M, Ou S, Patel S, Logan JS. Efficient SDS simulations on multi-GPU nodes of XSEDE high-end clusters Proceedings - Ieee 9th International Conference On E-Science, E-Science 2013. 116-123. DOI: 10.1109/eScience.2013.22  0.304
2013 Zhang B, Estrada T, Cicotti P, Taufer M. On efficiently capturing scientific properties in distributed big data without moving the data: A case study in distributed structural biology using MapReduce Proceedings - 16th Ieee International Conference On Computational Science and Engineering, Cse 2013. 117-124. DOI: 10.1109/CSE.2013.28  0.543
2012 Estrada T, Zhang B, Cicotti P, Armen RS, Taufer M. A scalable and accurate method for classifying protein-ligand binding geometries using a MapReduce approach Computers in Biology and Medicine. 42: 758-771. PMID 22658682 DOI: 10.1016/J.Compbiomed.2012.05.001  0.542
2012 Yehdego DT, Zhang B, Taufer M, Kodimala VKR, Vegesna R, Viswakula S, Johnson KL, Leung MY. Secondary structure predictions for long RNA sequences based on inversion excursions - Preliminary results 2012 Acm Conference On Bioinformatics, Computational Biology and Biomedicine, Bcb 2012. 545-547. DOI: 10.1145/2382936.2383016  0.458
2012 Wezowicz M, Saunder BD, Taufer M. Dealing with performance/portability and performance/accuracy trade-offs in heterogeneous computing systems: A case study with matrix multiplication modulo primes Proceedings of Spie - the International Society For Optical Engineering. 8403. DOI: 10.1117/12.919323  0.302
2012 Estrada T, Zhang B, Taufer M, Cicotti P, Armen R. Reengineering high-throughput molecular datasets for scalable clustering using MapReduce Proceedings of the 14th Ieee International Conference On High Performance Computing and Communications, Hpcc-2012 - 9th Ieee International Conference On Embedded Software and Systems, Icess-2012. 351-359. DOI: 10.1109/HPCC.2012.54  0.506
2012 Zhang B, Yehdego DT, Johnson KL, Leung MY, Taufer M. A modularized MapReduce framework to support RNA secondary structure prediction and analysis workflows Proceedings - 2012 Ieee International Conference On Bioinformatics and Biomedicine Workshops, Bibmw 2012. 86-93. DOI: 10.1109/BIBMW.2012.6470251  0.483
2012 Arampatzis G, Katsoulakis MA, Plecháč P, Taufer M, Xu L. Hierarchical fractional-step approximations and parallel kinetic Monte Carlo algorithms Journal of Computational Physics. 231: 7795-7814. DOI: 10.1016/J.Jcp.2012.07.017  0.371
2011 Ganesan N, Bauer BA, Lucas TR, Patel S, Taufer M. Structural, dynamic, and electrostatic properties of fully hydrated DMPC bilayers from molecular dynamics simulations accelerated with graphical processing units (GPUs). Journal of Computational Chemistry. 32: 2958-73. PMID 21793003 DOI: 10.1002/Jcc.21871  0.333
2011 Rahaman O, Estrada TP, Doren DJ, Taufer M, Brooks CL, Armen RS. Evaluation of several two-step scoring functions based on linear interaction energy, effective ligand size, and empirical pair potentials for prediction of protein-ligand binding geometry and free energy. Journal of Chemical Information and Modeling. 51: 2047-65. PMID 21644546 DOI: 10.1021/Ci1003009  0.304
2011 Bauer BA, Davis JE, Taufer M, Patel S. Molecular dynamics simulations of aqueous ions at the liquid-vapor interface accelerated using graphics processors. Journal of Computational Chemistry. 32: 375-85. PMID 20862755 DOI: 10.1002/Jcc.21578  0.4
2011 Ganesan N, Chamberlain RD, Buhler J, Taufer M. Rolling partial prefix-sums to speedup evaluation of uniform and affine recurrence equations Proceedings of Spie - the International Society For Optical Engineering. 8060. DOI: 10.1117/12.884896  0.363
2009 Estrada T, Taufer M, Anderson DP. Performance prediction and analysis of BOINC projects: An empirical study with EmBOINC Journal of Grid Computing. 7: 537-554. DOI: 10.1007/S10723-009-9126-3  0.381
2006 Taufer M, An C, Kerstens A, Brooks CL. PredictorΗome: A "protein structure prediction supercomputer" based on global computing Ieee Transactions On Parallel and Distributed Systems. 17: 786-796. DOI: 10.1109/Tpds.2006.110  0.354
2005 Cicotti P, Taufer M, Chien AA. DGMonitor: A performance monitoring tool for sandbox-based desktop grid platforms Journal of Supercomputing. 34: 113-133. DOI: 10.1007/S11227-005-2336-Y  0.427
2005 Taufer M, Crowley M, Price DJ, Chien AA, Brooks CL. Study of a highly accurate and fast protein-ligand docking method based on molecular dynamics Concurrency Computation Practice and Experience. 17: 1627-1641. DOI: 10.1002/Cpe.949  0.38
2003 Taufer M, Stricker T. A performance monitor based on virtual global time for clusters of PCs Proceedings - Ieee International Conference On Cluster Computing, Iccc. 2003: 64-72. DOI: 10.1109/CLUSTR.2003.1253300  0.333
2003 Uk B, Taufer M, Stricker T, Settanni G, Cavalli A, Caflisch A. Combining task- and data parallelism to speed up protein folding on a desktop grid platform Proceedings - Ccgrid 2003: 3rd Ieee/Acm International Symposium On Cluster Computing and the Grid. 240-249. DOI: 10.1109/CCGRID.2003.1199374  0.329
2002 Taufer M, Perathoner E, Cavalli A, Caflisch A, Stricker T. Performance characterization of a molecular dynamics code on PC clusters: Is there any easy parallelism in CHARMM? Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2002. 282-289. DOI: 10.1109/IPDPS.2002.1015505  0.32
2002 Taufer M, Stricker T, Weber R. Scalability and resource usage of an OLAP benchmark on clusters of PCs Annual Acm Symposium On Parallel Algorithms and Architectures. 83-94.  0.359
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