Scott A. Gerber, Ph.D. - Publications

2001 University of Washington, Seattle, Seattle, WA 
Analytical Chemistry, Genetics, Organic Chemistry

61 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Zhao Y, Cushing PR, Smithson DC, Pellegrini M, Pletnev AA, Al-Ayyoubi S, Grassetti AV, Gerber SA, Guy RK, Madden DR. Correction: Cysteine modification reveals an allosteric inhibitory site on the CAL PDZ domain. Bioscience Reports. PMID 29871975 DOI: 10.1042/BSR20180231_COR  0.32
2018 Kettenbach AN, Schlosser KA, Lyons SP, Nasa I, Gui J, Adamo ME, Gerber SA. Global assessment of its network dynamics reveals that the kinase Plk1 inhibits the phosphatase PP6 to promote Aurora A activity. Science Signaling. 11. PMID 29764989 DOI: 10.1126/scisignal.aaq1441  0.32
2018 Zhao Y, Cushing PR, Smithson DC, Pellegrini M, Pletnev AA, Al-Ayyoubi S, Grassetti AV, Gerber SA, Guy RK, Madden DR. Cysteine modification reveals an allosteric inhibitory site on the CAL PDZ domain. Bioscience Reports. PMID 29472314 DOI: 10.1042/BSR20180231  0.32
2017 Cullati SN, Kabeche L, Kettenbach AN, Gerber SA. A bifurcated signaling cascade of NIMA-related kinases controls distinct kinesins in anaphase. The Journal of Cell Biology. PMID 28630147 DOI: 10.1083/jcb.201512055  0.32
2016 Johnson ME, Grassetti AV, Taroni JN, Lyons SM, Schweppe D, Gordon JK, Spiera RF, Lafyatis R, Anderson PJ, Gerber SA, Whitfield ML. Stress granules and RNA processing bodies are novel autoantibody targets in systemic sclerosis. Arthritis Research & Therapy. 18: 27. PMID 26801089 DOI: 10.1186/s13075-016-0914-4  0.76
2016 Sullivan JM, Havrda MC, Kettenbach AN, Paolella BR, Zhang Z, Gerber SA, Israel MA. Phosphorylation regulates Id2 degradation and mediates the proliferation of neural precursor cells. Stem Cells (Dayton, Ohio). PMID 26756672 DOI: 10.1002/stem.2291  0.76
2016 Bahl CD, Hvorecny KL, Morisseau C, Gerber SA, Madden DR. Visualizing the Mechanism of Epoxide Hydrolysis by the Bacterial Virulence Enzyme Cif. Biochemistry. 55: 788-97. PMID 26752215 DOI: 10.1021/acs.biochem.5b01229  0.76
2015 Shanley MR, Hawley D, Leung S, Zaidi NF, Dave R, Schlosser KA, Bandopadhyay R, Gerber SA, Liu M. LRRK2 Facilitates tau Phosphorylation through Strong Interaction with tau and cdk5. Biochemistry. 54: 5198-208. PMID 26268594 DOI: 10.1021/acs.biochem.5b00326  0.76
2015 Kettenbach AN, Deng L, Wu Y, Baldissard S, Adamo ME, Gerber SA, Moseley JB. Quantitative phosphoproteomics reveals pathways for coordination of cell growth and division by the conserved fission yeast kinase pom1. Molecular & Cellular Proteomics : McP. 14: 1275-87. PMID 25720772 DOI: 10.1074/mcp.M114.045245  0.76
2015 Kettenbach AN, Sano H, Keller SR, Lienhard GE, Gerber SA. SPECHT - single-stage phosphopeptide enrichment and stable-isotope chemical tagging: quantitative phosphoproteomics of insulin action in muscle. Journal of Proteomics. 114: 48-60. PMID 25463755 DOI: 10.1016/j.jprot.2014.11.001  0.76
2014 Wang B, Kettenbach AN, Gerber SA, Loros JJ, Dunlap JC. Neurospora WC-1 recruits SWI/SNF to remodel frequency and initiate a circadian cycle. Plos Genetics. 10: e1004599. PMID 25254987 DOI: 10.1371/journal.pgen.1004599  0.76
2014 Deng L, Baldissard S, Kettenbach AN, Gerber SA, Moseley JB. Dueling kinases regulate cell size at division through the SAD kinase Cdr2. Current Biology : Cb. 24: 428-33. PMID 24508166 DOI: 10.1016/j.cub.2014.01.009  0.76
2013 Gilmore JM, Milloy JA, Gerber SA. SILAC surrogates: rescue of quantitative information for orphan analytes in spike-in SILAC experiments. Analytical Chemistry. 85: 10812-9. PMID 24152235 DOI: 10.1021/ac4021352  0.76
2013 Schweppe DK, Rigas JR, Gerber SA. Quantitative phosphoproteomic profiling of human non-small cell lung cancer tumors. Journal of Proteomics. 91: 286-96. PMID 23911959 DOI: 10.1016/j.jprot.2013.07.023  0.76
2013 Soundararajan M, Roos AK, Savitsky P, Filippakopoulos P, Kettenbach AN, Olsen JV, Gerber SA, Eswaran J, Knapp S, Elkins JM. Structures of Down syndrome kinases, DYRKs, reveal mechanisms of kinase activation and substrate recognition. Structure (London, England : 1993). 21: 986-96. PMID 23665168 DOI: 10.1016/j.str.2013.03.012  0.76
2012 Rice KP, Klinkerch EJ, Gerber SA, Schleicher TR, Kraus TJ, Buros CM. Thioredoxin reductase is inhibited by the carbamoylating activity of the anticancer sulfonylhydrazine drug laromustine. Molecular and Cellular Biochemistry. 370: 199-207. PMID 22864532 DOI: 10.1007/s11010-012-1411-y  0.76
2012 Christofferson DE, Li Y, Hitomi J, Zhou W, Upperman C, Zhu H, Gerber SA, Gygi S, Yuan J. A novel role for RIP1 kinase in mediating TNFa production Cell Death and Disease. 3. PMID 22695613 DOI: 10.1038/cddis.2012.64  0.76
2012 Milloy JA, Faherty BK, Gerber SA. Tempest: GPU-CPU computing for high-throughput database spectral matching. Journal of Proteome Research. 11: 3581-91. PMID 22640374 DOI: 10.1021/pr300338p  0.76
2012 Kettenbach AN, Wang T, Faherty BK, Madden DR, Knapp S, Bailey-Kellogg C, Gerber SA. Rapid determination of multiple linear kinase substrate motifs by mass spectrometry. Chemistry & Biology. 19: 608-18. PMID 22633412 DOI: 10.1016/j.chembiol.2012.04.011  0.76
2012 Zhang A, Petrov KO, Hyun ER, Liu Z, Gerber SA, Myers LC. The Tlo proteins are stoichiometric components of Candida albicans mediator anchored via the Med3 subunit. Eukaryotic Cell. 11: 874-84. PMID 22562472 DOI: 10.1128/EC.00095-12  0.76
2012 Hood EA, Kettenbach AN, Gerber SA, Compton DA. Plk1 regulates the kinesin-13 protein Kif2b to promote faithful chromosome segregation. Molecular Biology of the Cell. 23: 2264-74. PMID 22535524 DOI: 10.1091/mbc.E11-12-1013  0.76
2012 Wang T, Kettenbach AN, Gerber SA, Bailey-Kellogg C. MMFPh: a maximal motif finder for phosphoproteomics datasets. Bioinformatics (Oxford, England). 28: 1562-70. PMID 22531218 DOI: 10.1093/bioinformatics/bts195  0.76
2012 Gilmore JM, Kettenbach AN, Gerber SA. Increasing phosphoproteomic coverage through sequential digestion by complementary proteases. Analytical and Bioanalytical Chemistry. 402: 711-20. PMID 22002561 DOI: 10.1007/s00216-011-5466-5  0.76
2012 Wang T, Kettenbach AN, Gerber SA, Bailey-Kellogg C. Response to 'Comments on "MMFPh: A Maximal Motif Finder For Phosphoproteomics Datasets"' Bioinformatics. 28: 2213. DOI: 10.1093/bioinformatics/bts347  0.76
2011 Liu M, Kang S, Ray S, Jackson J, Zaitsev AD, Gerber SA, Cuny GD, Glicksman MA. Kinetic, mechanistic, and structural modeling studies of truncated wild-type leucine-rich repeat kinase 2 and the G2019S mutant. Biochemistry. 50: 9399-408. PMID 21961647 DOI: 10.1021/bi201173d  0.76
2011 Kettenbach AN, Gerber SA. Rapid and reproducible single-stage phosphopeptide enrichment of complex peptide mixtures: application to general and phosphotyrosine-specific phosphoproteomics experiments. Analytical Chemistry. 83: 7635-44. PMID 21899308 DOI: 10.1021/ac201894j  0.76
2011 Yore MM, Kettenbach AN, Sporn MB, Gerber SA, Liby KT. Proteomic analysis shows synthetic oleanane triterpenoid binds to mTOR. Plos One. 6: e22862. PMID 21818401 DOI: 10.1371/journal.pone.0022862  0.76
2011 Kettenbach AN, Schweppe DK, Faherty BK, Pechenick D, Pletnev AA, Gerber SA. Quantitative phosphoproteomics identifies substrates and functional modules of Aurora and Polo-like kinase activities in mitotic cells. Science Signaling. 4: rs5. PMID 21712546 DOI: 10.1126/scisignal.2001497  0.76
2011 Sano H, Peck GR, Kettenbach AN, Gerber SA, Lienhard GE. Insulin-stimulated GLUT4 protein translocation in adipocytes requires the Rab10 guanine nucleotide exchange factor Dennd4C. The Journal of Biological Chemistry. 286: 16541-5. PMID 21454697 DOI: 10.1074/jbc.C111.228908  0.76
2011 Kettenbach AN, Rush J, Gerber SA. Absolute quantification of protein and post-translational modification abundance with stable isotope-labeled synthetic peptides. Nature Protocols. 6: 175-86. PMID 21293459 DOI: 10.1038/nprot.2010.196  0.76
2010 Faherty BK, Gerber SA. MacroSEQUEST: efficient candidate-centric searching and high-resolution correlation analysis for large-scale proteomics data sets. Analytical Chemistry. 82: 6821-9. PMID 20684545 DOI: 10.1021/ac100783x  0.76
2010 Choi SH, Wright JB, Gerber SA, Cole MD. Myc protein is stabilized by suppression of a novel E3 ligase complex in cancer cells. Genes & Development. 24: 1236-41. PMID 20551172 DOI: 10.1101/gad.1920310  0.76
2009 Wai SC, Gerber SA, Li R. Multisite phosphorylation of the guanine nucleotide exchange factor Cdc24 during yeast cell polarization. Plos One. 4: e6563. PMID 19668330 DOI: 10.1371/journal.pone.0006563  0.76
2009 Baker CL, Kettenbach AN, Loros JJ, Gerber SA, Dunlap JC. Quantitative proteomics reveals a dynamic interactome and phase-specific phosphorylation in the Neurospora circadian clock. Molecular Cell. 34: 354-63. PMID 19450533 DOI: 10.1016/j.molcel.2009.04.023  0.76
2009 Chhabra ES, Ramabhadran V, Gerber SA, Higgs HN. INF2 is an endoplasmic reticulum-associated formin protein. Journal of Cell Science. 122: 1430-40. PMID 19366733 DOI: 10.1242/jcs.040691  0.76
2009 Lyons PD, Peck GR, Kettenbach AN, Gerber SA, Roudaia L, Lienhard GE. Insulin stimulates the phosphorylation of the exocyst protein Sec8 in adipocytes. Bioscience Reports. 29: 229-35. PMID 19006485 DOI: 10.1042/BSR20080162  0.76
2008 Bakalarski CE, Elias JE, Villén J, Haas W, Gerber SA, Everley PA, Gygi SP. The impact of peptide abundance and dynamic range on stable-isotope-based quantitative proteomic analyses. Journal of Proteome Research. 7: 4756-65. PMID 18798661 DOI: 10.1021/pr800333e  0.76
2008 Degterev A, Hitomi J, Germscheid M, Ch'en IL, Korkina O, Teng X, Abbott D, Cuny GD, Yuan C, Wagner G, Hedrick SM, Gerber SA, Lugovskoy A, Yuan J. Identification of RIP1 kinase as a specific cellular target of necrostatins. Nature Chemical Biology. 4: 313-21. PMID 18408713 DOI: 10.1038/nchembio.83  0.76
2008 Loring GL, Christensen KC, Gerber SA, Brenner C. Yeast Chfr homologs retard cell cycle at G1 and G2/M via Ubc4 and Ubc13/Mms2-dependent ubiquitination. Cell Cycle (Georgetown, Tex.). 7: 96-105. PMID 18202552  0.76
2007 Gerber SA, Kettenbach AN, Rush J, Gygi SP. The absolute quantification strategy: application to phosphorylation profiling of human separase serine 1126. Methods in Molecular Biology (Clifton, N.J.). 359: 71-86. PMID 17484111 DOI: 10.1007/978-1-59745-255-7_5  0.76
2007 Li X, Gerber SA, Rudner AD, Beausoleil SA, Haas W, Villén J, Elias JE, Gygi SP. Large-scale phosphorylation analysis of alpha-factor-arrested Saccharomyces cerevisiae. Journal of Proteome Research. 6: 1190-7. PMID 17330950 DOI: 10.1021/pr060559j  0.76
2007 Villén J, Beausoleil SA, Gerber SA, Gygi SP. Large-scale phosphorylation analysis of mouse liver. Proceedings of the National Academy of Sciences of the United States of America. 104: 1488-93. PMID 17242355 DOI: 10.1073/pnas.0609836104  0.76
2007 Hu X, Eszterhas S, Pallazzi N, Bouhassira EE, Fields J, Tanabe O, Gerber SA, Bulger M, Engel JD, Groudine M, Fiering S. Transcriptional interference among the murine beta-like globin genes. Blood. 109: 2210-6. PMID 17077320 DOI: 10.1182/blood-2006-06-029868  0.76
2006 Moazed D, Bühler M, Buker SM, Colmenares SU, Gerace EL, Gerber SA, Hong EJ, Motamedi MR, Verdel A, Villén J, Gygi SP. Studies on the mechanism of RNAi-dependent heterochromatin assembly. Cold Spring Harbor Symposia On Quantitative Biology. 71: 461-71. PMID 17381328 DOI: 10.1101/sqb.2006.71.044  0.76
2006 Beausoleil SA, Villén J, Gerber SA, Rush J, Gygi SP. A probability-based approach for high-throughput protein phosphorylation analysis and site localization. Nature Biotechnology. 24: 1285-92. PMID 16964243 DOI: 10.1038/nbt1240  0.76
2006 Everley PA, Bakalarski CE, Elias JE, Waghorne CG, Beausoleil SA, Gerber SA, Faherty BK, Zetter BR, Gygi SP. Enhanced analysis of metastatic prostate cancer using stable isotopes and high mass accuracy instrumentation. Journal of Proteome Research. 5: 1224-31. PMID 16674112 DOI: 10.1021/pr0504891  0.76
2006 Haas W, Faherty BK, Gerber SA, Elias JE, Beausoleil SA, Bakalarski CE, Li X, Villén J, Gygi SP. Optimization and use of peptide mass measurement accuracy in shotgun proteomics. Molecular & Cellular Proteomics : McP. 5: 1326-37. PMID 16635985 DOI: 10.1074/mcp.M500339-MCP200  0.76
2005 Dieguez-Acuna FJ, Gerber SA, Kodama S, Elias JE, Beausoleil SA, Faustman D, Gygi SP. Characterization of mouse spleen cells by subtractive proteomics. Molecular & Cellular Proteomics : McP. 4: 1459-70. PMID 16037072 DOI: 10.1074/mcp.M500137-MCP200  0.76
2005 Kirkpatrick DS, Gerber SA, Gygi SP. The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications. Methods (San Diego, Calif.). 35: 265-73. PMID 15722223 DOI: 10.1016/j.ymeth.2004.08.018  0.76
2005 Ballif BA, Roux PP, Gerber SA, MacKeigan JP, Blenis J, Gygi SP. Quantitative phosphorylation profiling of the ERK/p90 ribosomal S6 kinase-signaling cassette and its targets, the tuberous sclerosis tumor suppressors. Proceedings of the National Academy of Sciences of the United States of America. 102: 667-72. PMID 15647351 DOI: 10.1073/pnas.0409143102  0.76
2005 Denison C, Rudner AD, Gerber SA, Bakalarski CE, Moazed D, Gygi SP. A proteomic strategy for gaining insights into protein sumoylation in yeast. Molecular & Cellular Proteomics : McP. 4: 246-54. PMID 15542864 DOI: 10.1074/mcp.M400154-MCP200  0.76
2004 Motamedi MR, Verdel A, Colmenares SU, Gerber SA, Gygi SP, Moazed D. Two RNAi complexes, RITS and RDRC, physically interact and localize to noncoding centromeric RNAs. Cell. 119: 789-802. PMID 15607976 DOI: 10.1016/j.cell.2004.11.034  0.76
2004 Tanny JC, Kirkpatrick DS, Gerber SA, Gygi SP, Moazed D. Budding yeast silencing complexes and regulation of Sir2 activity by protein-protein interactions. Molecular and Cellular Biology. 24: 6931-46. PMID 15282295 DOI: 10.1128/MCB.24.16.6931-6946.2004  0.76
2004 Vrabioiu AM, Gerber SA, Gygi SP, Field CM, Mitchison TJ. The majority of the Saccharomyces cerevisiae septin complexes do not exchange guanine nucleotides. The Journal of Biological Chemistry. 279: 3111-8. PMID 14597621 DOI: 10.1074/jbc.M310941200  0.76
2003 Gerber SA, Rush J, Stemman O, Kirschner MW, Gygi SP. Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proceedings of the National Academy of Sciences of the United States of America. 100: 6940-5. PMID 12771378 DOI: 10.1073/pnas.0832254100  0.76
2002 Hoppe GJ, Tanny JC, Rudner AD, Gerber SA, Danaie S, Gygi SP, Moazed D. Steps in assembly of silent chromatin in yeast: Sir3-independent binding of a Sir2/Sir4 complex to silencers and role for Sir2-dependent deacetylation. Molecular and Cellular Biology. 22: 4167-80. PMID 12024030 DOI: 10.1128/MCB.22.12.4167-4180.2002  0.76
2001 Stemmann O, Zou H, Gerber SA, Gygi SP, Kirschner MW. Dual inhibition of sister chromatid separation at metaphase. Cell. 107: 715-26. PMID 11747808 DOI: 10.1016/S0092-8674(01)00603-1  0.76
2001 Gerber SA, Tureček F, Gelb MH. Design and synthesis of substrate and internal standard conjugates for profiling enzyme activity in the sanfilippo syndrome by affinity chromatography/electrospray ionization mass spectrometry Bioconjugate Chemistry. 12: 603-615. PMID 11459466 DOI: 10.1021/bc010007l  0.76
2001 Gerber SA, Scott CR, Turecek F, Gelb MH. Direct profiling of multiple enzyme activities in human cell lysates by affinity chromatography/electrospray ionization mass spectrometry: application to clinical enzymology. Analytical Chemistry. 73: 1651-7. PMID 11338575 DOI: 10.1021/ac0100650  0.76
1999 Gygi SP, Rist B, Gerber SA, Turecek F, Gelb MH, Aebersold R. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nature Biotechnology. 17: 994-9. PMID 10504701 DOI: 10.1038/13690  0.76
1999 Gerber SA, Scott CR, Turecek F, Gelb MH. Analysis of rates of multiple enzymes in cell lysates by electrospray ionization mass spectrometry [8] Journal of the American Chemical Society. 121: 1102-1103. DOI: 10.1021/ja982878k  0.76
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