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Timothy J. Richmond, Ph.D. - Publications

Affiliations: 
Institute of Molecular Biology & Biophysics Eidgenössische Technische Hochschule Zürich, Zürich, ZH, Switzerland 
Area:
Nucleosome structure
Website:
http://www.mol.biol.ethz.ch/groups/richmond

90 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Frouws TD, Barth PD, Richmond TJ. Site-Specific Disulfide Crosslinked Nucleosomes with Enhanced Stability. Journal of Molecular Biology. PMID 29113904 DOI: 10.1016/J.Jmb.2017.10.029  1
2017 Ekundayo B, Richmond TJ, Schalch T. Capturing structural heterogeneity in chromatin fibers. Journal of Molecular Biology. PMID 28893533 DOI: 10.1016/J.Jmb.2017.09.002  1
2016 Frouws TD, Duda SC, Richmond TJ. X-ray structure of the MMTV-A nucleosome core. Proceedings of the National Academy of Sciences of the United States of America. PMID 26787910 DOI: 10.1073/Pnas.1524607113  1
2014 Lobsiger J, Hunziker Y, Richmond TJ. Structure of the full-length yeast Arp7-Arp9 heterodimer. Acta Crystallographica. Section D, Biological Crystallography. 70: 310-6. PMID 24531465 DOI: 10.1107/S1399004713027417  1
2012 Richmond TJ. Nucleosome recognition and spacing by chromatin remodelling factor ISW1a. Biochemical Society Transactions. 40: 347-50. PMID 22435810 DOI: 10.1042/Bst20110748  1
2012 Yamada K, Sargent DF, Richmond TJ. ISW1a crystal resolution improvements through packing engineering Acta Crystallographica Section a Foundations of Crystallography. 68: s16-s16. DOI: 10.1107/S0108767312099680  0.01
2012 Richmond TJ. Nucleosome recognition and spacing by chromatin remodelling factor ISW1a (Biochemical Society Transactions (2012) 40, Part 2 (347-350)) Biochemical Society Transactions. 40: 595.  1
2011 Yamada K, Frouws TD, Angst B, Fitzgerald DJ, DeLuca C, Schimmele K, Sargent DF, Richmond TJ. Structure and mechanism of the chromatin remodelling factor ISW1a. Nature. 472: 448-53. PMID 21525927 DOI: 10.1038/Nature09947  1
2011 Vijayachandran LS, Viola C, Garzoni F, Trowitzsch S, Bieniossek C, Chaillet M, Schaffitzel C, Busso D, Romier C, Poterszman A, Richmond TJ, Berger I. Robots, pipelines, polyproteins: enabling multiprotein expression in prokaryotic and eukaryotic cells. Journal of Structural Biology. 175: 198-208. PMID 21419851 DOI: 10.1016/J.Jsb.2011.03.007  1
2011 Yamada K, Frouws TD, Angst B, Schimmele K, Sargent DF, Richmond TJ. Structural and functional analysis of the ISW1a chromatin remodeling complex Acta Crystallographica Section a Foundations of Crystallography. 67: C49-C49. DOI: 10.1107/S0108767311098874  0.01
2009 Bieniossek C, Nie Y, Frey D, Olieric N, Schaffitzel C, Collinson I, Romier C, Berger P, Richmond TJ, Steinmetz MO, Berger I. Automated unrestricted multigene recombineering for multiprotein complex production. Nature Methods. 6: 447-50. PMID 19412171 DOI: 10.1038/Nmeth.1326  1
2009 Richmond TJ, Yamada K, Frouws T, Angst B, Schimmele K. Structural Studies on the Chromatin Remodeling Factor ISW1a Biophysical Journal. 96: 544a. DOI: 10.1016/J.Bpj.2008.12.2942  0.01
2008 Bieniossek C, Richmond TJ, Berger I. MultiBac: multigene baculovirus-based eukaryotic protein complex production. Current Protocols in Protein Science / Editorial Board, John E. Coligan ... [Et Al.]. Unit 5.20. PMID 18429060 DOI: 10.1002/0471140864.Ps0520S51  1
2008 Galius V, Leontiou C, Richmond T, Wider G. Projected [1H,15N]-HMQC- [1H,1H]-NOESY for large molecular systems: Application to a 121 kDa protein-DNA complex Journal of Biomolecular Nmr. 40: 175-181. PMID 18231863 DOI: 10.1007/S10858-008-9219-5  1
2007 Ong MS, Richmond TJ, Davey CA. DNA stretching and extreme kinking in the nucleosome core. Journal of Molecular Biology. 368: 1067-74. PMID 17379244 DOI: 10.1016/J.Jmb.2007.02.062  1
2007 Fitzgerald DJ, Schaffitzel C, Berger P, Wellinger R, Bieniossek C, Richmond TJ, Berger I. Multiprotein expression strategy for structural biology of eukaryotic complexes. Structure (London, England : 1993). 15: 275-9. PMID 17355863 DOI: 10.1016/J.Str.2007.01.016  1
2007 Richmond T. Fritz Lipmann Lecture: Visualization of Chromatin Structure at High Resolution Gbm Fall Meeting Hamburg 2007. 2007. DOI: 10.1240/sav_gbm_2007_h_002073  0.01
2006 Fitzgerald DJ, Berger P, Schaffitzel C, Yamada K, Richmond TJ, Berger I. Protein complex expression by using multigene baculoviral vectors. Nature Methods. 3: 1021-32. PMID 17117155 DOI: 10.1038/Nmeth983  1
2006 Richmond TJ. Genomics: predictable packaging. Nature. 442: 750-2. PMID 16915272 DOI: 10.1038/442750A  1
2005 Schalch T, Duda S, Sargent DF, Richmond TJ. X-ray structure of a tetranucleosome and its implications for the chromatin fibre. Nature. 436: 138-41. PMID 16001076 DOI: 10.1038/Nature03686  1
2005 Richmond T, Davey C, Schalch T. Nucleosome core and compact nucleosome array structures Acta Crystallographica Section a Foundations of Crystallography. 61: c99-c99. DOI: 10.1107/S0108767305095814  0.01
2004 Berger I, Fitzgerald DJ, Richmond TJ. Baculovirus expression system for heterologous multiprotein complexes. Nature Biotechnology. 22: 1583-7. PMID 15568020 DOI: 10.1038/Nbt1036  1
2004 Dorigo B, Schalch T, Kulangara A, Duda S, Schroeder RR, Richmond TJ. Nucleosome arrays reveal the two-start organization of the chromatin fiber. Science (New York, N.Y.). 306: 1571-3. PMID 15567867 DOI: 10.1126/Science.1103124  1
2004 Fitzgerald DJ, DeLuca C, Berger I, Gaillard H, Sigrist R, Schimmele K, Richmond TJ. Reaction cycle of the yeast Isw2 chromatin remodeling complex. The Embo Journal. 23: 3836-43. PMID 15359274 DOI: 10.1038/Sj.Emboj.7600364  1
2004 Sargent DF, Richmond TJ. Comment on Flash-cooling of macromolecular crystals to overcome increased mosaicity by Yao, Yasutake & Tanaka (2004). Acta Crystallographica. Section D, Biological Crystallography. 60: 616. PMID 14993711 DOI: 10.1107/S0907444904002616  1
2004 Berger I, Fitzgerald D, Richmond T. New Baculovirus Expression Tools for Multiprotein Applications Gbm Annual Fall Meeting M�Nster 2004. 2004. DOI: 10.1240/sav_gbm_2004_h_000731  0.01
2003 Bleichenbacher M, Tan S, Richmond TJ. Novel interactions between the components of human and yeast TFIIA/TBP/DNA complexes. Journal of Molecular Biology. 332: 783-93. PMID 12972251 DOI: 10.1016/S0022-2836(03)00887-8  1
2003 Richmond TJ, Davey CA. The structure of DNA in the nucleosome core. Nature. 423: 145-50. PMID 12736678 DOI: 10.1038/Nature01595  1
2003 Gaillard H, Fitzgerald DJ, Smith CL, Peterson CL, Richmond TJ, Thoma F. Chromatin remodeling activities act on UV-damaged nucleosomes and modulate DNA damage accessibility to photolyase. The Journal of Biological Chemistry. 278: 17655-63. PMID 12637512 DOI: 10.1074/Jbc.M300770200  1
2003 Berger I, Bieniossek C, Schaffitzel C, Hassler M, Santelli E, Richmond TJ. Direct interaction of Ca2+/calmodulin inhibits histone deacetylase 5 repressor core binding to myocyte enhancer factor 2. The Journal of Biological Chemistry. 278: 17625-35. PMID 12626519 DOI: 10.1074/Jbc.M301646200  1
2003 Dorigo B, Schalch T, Bystricky K, Richmond TJ. Chromatin fiber folding: requirement for the histone H4 N-terminal tail. Journal of Molecular Biology. 327: 85-96. PMID 12614610 DOI: 10.1016/S0022-2836(03)00025-1  1
2002 Eichhorn E, Davey CA, Sargent DF, Leisinger T, Richmond TJ. Crystal structure of Escherichia coli alkanesulfonate monooxygenase SsuD. Journal of Molecular Biology. 324: 457-68. PMID 12445781 DOI: 10.1016/S0022-2836(02)01069-0  1
2002 Davey CA, Richmond TJ. DNA-dependent divalent cation binding in the nucleosome core particle. Proceedings of the National Academy of Sciences of the United States of America. 99: 11169-74. PMID 12169666 DOI: 10.1073/Pnas.172271399  1
2002 Mittl PR, Fritz G, Sargent DF, Richmond TJ, Heizmann CW, Grütter MG. Metal-free MIRAS phasing: structure of apo-S100A3. Acta Crystallographica. Section D, Biological Crystallography. 58: 1255-61. PMID 12136135 DOI: 10.1107/S0907444902008430  1
2002 Davey CA, Sargent DF, Luger K, Maeder AW, Richmond TJ. Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution. Journal of Molecular Biology. 319: 1097-113. PMID 12079350 DOI: 10.1016/S0022-2836(02)00386-8  1
2001 Capitani G, Rossmann R, Sargent DF, Grütter MG, Richmond TJ, Hennecke H. Structure of the soluble domain of a membrane-anchored thioredoxin-like protein from Bradyrhizobium japonicum reveals unusual properties. Journal of Molecular Biology. 311: 1037-48. PMID 11531338 DOI: 10.1006/Jmbi.2001.4913  1
2001 Hassler M, Richmond TJ. The B-box dominates SAP-1-SRF interactions in the structure of the ternary complex. The Embo Journal. 20: 3018-28. PMID 11406578 DOI: 10.1093/Emboj/20.12.3018  1
2001 Gelbart ME, Rechsteiner T, Richmond TJ, Tsukiyama T. Interactions of Isw2 chromatin remodeling complex with nucleosomal arrays: analyses using recombinant yeast histones and immobilized templates. Molecular and Cellular Biology. 21: 2098-106. PMID 11238944 DOI: 10.1128/Mcb.21.6.2098-2106.2001  1
2001 Doudna JA, Richmond TJ. Editorial OverviewProtein–nucleic acid interactions Current Opinion in Structural Biology. 11. DOI: 10.1016/S0959-440X(00)00178-0  1
2001 Richmond TJ. The structural basis of gene regulation for DNA organized as chromatin Chimia. 55: 487-492.  1
2000 Luger K, Mäder A, Sargent DF, Richmond TJ. The atomic structure of the nucleosome core particle. Journal of Biomolecular Structure & Dynamics. 17: 185-8. PMID 22607422 DOI: 10.1080/07391102.2000.10506619  1
2000 Gaiser F, Tan S, Richmond TJ. Novel dimerization fold of RAP30/RAP74 in human TFIIF at 1.7 A resolution. Journal of Molecular Biology. 302: 1119-27. PMID 11183778 DOI: 10.1006/Jmbi.2000.4110  1
2000 Tan S, Hunziker Y, Pellegrini L, Richmond TJ. Crystallization of the yeast MATalpha2/MCM1/DNA ternary complex: general methods and principles for protein/DNA cocrystallization. Journal of Molecular Biology. 297: 947-59. PMID 10736229 DOI: 10.1006/Jmbi.2000.3606  1
2000 Santelli E, Richmond TJ. Crystal structure of MEF2A core bound to DNA at 1.5 A resolution. Journal of Molecular Biology. 297: 437-49. PMID 10715212 DOI: 10.1006/Jmbi.2000.3568  1
2000 Davey CA, Richmond TJ. The High Resolution Crystal Structure of the Nucleosome Core Particle: Sequence-Dependent DNA-Bending and Plasticity of Histone-DNA Binding Acta Crystallographica Section a Foundations of Crystallography. 56: s439-s439. DOI: 10.1107/S0108767300029044  0.01
1999 Flaus A, Richmond TJ. Base-pair resolution mapping of nucleosomes in vitro. Methods in Molecular Biology (Clifton, N.J.). 119: 45-60. PMID 10804503 DOI: 10.1385/1-59259-681-9:45  1
1999 Luger K, Rechsteiner TJ, Richmond TJ. Expression and purification of recombinant histones and nucleosome reconstitution. Methods in Molecular Biology (Clifton, N.J.). 119: 1-16. PMID 10804500 DOI: 10.1385/1-59259-681-9:1  1
1999 Flaus A, Richmond TJ. Base-pair resolution mapping of nucleosome positions using site-directed hydroxy radicals. Methods in Enzymology. 304: 251-63. PMID 10372364 DOI: 10.1016/S0076-6879(99)04015-X  1
1999 Luger K, Rechsteiner TJ, Richmond TJ. Preparation of nucleosome core particle from recombinant histones. Methods in Enzymology. 304: 3-19. PMID 10372352 DOI: 10.1016/S0076-6879(99)04003-3  1
1999 Goldberg M, Harel A, Brandeis M, Rechsteiner T, Richmond TJ, Weiss AM, Gruenbaum Y. The tail domain of lamin Dm0 binds histones H2A and H2B. Proceedings of the National Academy of Sciences of the United States of America. 96: 2852-7. PMID 10077600 DOI: 10.1073/Pnas.96.6.2852  1
1998 Panetta G, Buttinelli M, Flaus A, Richmond TJ, Rhodes D. Differential nucleosome positioning on Xenopus oocyte and somatic 5 S RNA genes determines both TFIIIA and H1 binding: a mechanism for selective H1 repression. Journal of Molecular Biology. 282: 683-97. PMID 9737930 DOI: 10.1006/Jmbi.1998.2087  1
1998 Spangenberg C, Eisfeld K, Stünkel W, Luger K, Flaus A, Richmond TJ, Truss M, Beato M. The mouse mammary tumour virus promoter positioned on a tetramer of histones H3 and H4 binds nuclear factor 1 and OTF1. Journal of Molecular Biology. 278: 725-39. PMID 9614938 DOI: 10.1006/Jmbi.1998.1718  1
1998 Luger K, Richmond TJ. The histone tails of the nucleosome. Current Opinion in Genetics & Development. 8: 140-6. PMID 9610403 DOI: 10.1016/S0959-437X(98)80134-2  1
1998 Tan S, Richmond TJ. Eukaryotic transcription factors. Current Opinion in Structural Biology. 8: 41-8. PMID 9519295 DOI: 10.1016/S0959-440X(98)80008-0  1
1998 Luger K, Richmond TJ. DNA binding within the nucleosome core. Current Opinion in Structural Biology. 8: 33-40. PMID 9519294 DOI: 10.1016/S0959-440X(98)80007-9  1
1998 Richmond TJ, Steitz TA. Protein-nucleic acid interactions. Current Opinion in Structural Biology. 8: 11-3. PMID 9519290 DOI: 10.1016/S0959-440X(98)80003-1  1
1998 Tan S, Richmond TJ. Crystal structure of the yeast MATalpha2/MCM1/DNA ternary complex. Nature. 391: 660-6. PMID 9490409 DOI: 10.1038/35563  1
1998 Flaus A, Richmond TJ. Positioning and stability of nucleosomes on MMTV 3'LTR sequences. Journal of Molecular Biology. 275: 427-41. PMID 9466921 DOI: 10.1006/Jmbi.1997.1464  1
1997 Luger K, Rechsteiner TJ, Flaus AJ, Waye MM, Richmond TJ. Characterization of nucleosome core particles containing histone proteins made in bacteria. Journal of Molecular Biology. 272: 301-11. PMID 9325091 DOI: 10.1006/Jmbi.1997.1235  1
1997 Luger K, Mäder AW, Richmond RK, Sargent DF, Richmond TJ. Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature. 389: 251-60. PMID 9305837 DOI: 10.1038/38444  1
1996 Flaus A, Luger K, Tan S, Richmond TJ. Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals. Proceedings of the National Academy of Sciences of the United States of America. 93: 1370-5. PMID 8643638 DOI: 10.1073/Pnas.93.4.1370  1
1996 Tan S, Hunziker Y, Sargent DF, Richmond TJ. Crystal structure of a yeast TFIIA/TBP/DNA complex. Nature. 381: 127-51. PMID 8610010 DOI: 10.1038/381127A0  1
1995 Pellegrini L, Tan S, Richmond TJ. Structure of serum response factor core bound to DNA. Nature. 376: 490-8. PMID 7637780 DOI: 10.1038/376490A0  1
1995 Keller W, König P, Richmond TJ. Crystal structure of a bZIP/DNA complex at 2.2 A: determinants of DNA specific recognition. Journal of Molecular Biology. 254: 657-67. PMID 7500340 DOI: 10.1006/Jmbi.1995.0645  1
1993 König P, Richmond TJ. The X-ray structure of the GCN4-bZIP bound to ATF/CREB site DNA shows the complex depends on DNA flexibility. Journal of Molecular Biology. 233: 139-54. PMID 8377181 DOI: 10.1006/Jmbi.1993.1490  1
1993 Ganter B, Tan S, Richmond TJ. Genomic footprinting of the promoter regions of STE2 and STE3 genes in the yeast Saccharomyces cerevisiae. Journal of Molecular Biology. 234: 975-87. PMID 8263944 DOI: 10.1006/Jmbi.1993.1652  1
1993 Richmond TJ, Rechsteiner T, Luger K. Studies of nucleosome structure. Cold Spring Harbor Symposia On Quantitative Biology. 58: 265-72. PMID 7956038 DOI: 10.1101/Sqb.1993.058.01.031  1
1993 Bavand MR, Wagner R, Richmond TJ. HIV-1 reverse transcriptase: polymerization properties of the p51 homodimer compared to the p66/p51 heterodimer. Biochemistry. 32: 10543-52. PMID 7691176 DOI: 10.1021/Bi00091A003  1
1993 von Freyberg B, Richmond TJ, Braun W. Surface area included in energy refinement of proteins. A comparative study on atomic solvation parameters. Journal of Molecular Biology. 233: 275-92. PMID 7690855 DOI: 10.1006/Jmbi.1993.1506  1
1993 Konig P, Keller W, Richmond T. High resolution strucure of a GCN4 bZIP-ATF/CREB site DNA complex Acta Crystallographica Section a Foundations of Crystallography. 49: c60-c60. DOI: 10.1107/S0108767378098268  0.08
1992 Struck MM, Klug A, Richmond TJ. Comparison of X-ray structures of the nucleosome core particle in two different hydration states. Journal of Molecular Biology. 224: 253-64. PMID 1548703 DOI: 10.1016/0022-2836(92)90588-B  1
1990 Schnyder T, Sargent DF, Richmond TJ, Eppenberger HM, Wallimann T. Crystallization and preliminary X-ray analysis of two different forms of mitochondrial creatine kinase from chicken cardiac muscle. Journal of Molecular Biology. 216: 809-12. PMID 2266558 DOI: 10.1016/S0022-2836(99)80002-3  1
1990 Tan S, Richmond TJ. DNA binding-induced conformational change of the yeast transcriptional activator PRTF. Cell. 62: 367-77. PMID 2164891 DOI: 10.1016/0092-8674(90)90373-M  1
1989 Richmond T. Chromatin structure by X-ray crystallography Cell Differentiation and Development. 27: 108. DOI: 10.1016/0922-3371(89)90344-4  0.01
1988 Richmond TJ, Searles MA, Simpson RT. Crystals of a nucleosome core particle containing defined sequence DNA. Journal of Molecular Biology. 199: 161-70. PMID 3351917 DOI: 10.1016/0022-2836(88)90386-5  1
1988 Tan S, Ammerer G, Richmond TJ. Interactions of purified transcription factors: binding of yeast MAT alpha 1 and PRTF to cell type-specific, upstream activating sequences. The Embo Journal. 7: 4255-64. PMID 2854061 DOI: 10.1002/J.1460-2075.1988.Tb03323.X  1
1987 O'Halloran TV, Lippard SJ, Richmond TJ, Klug A. Multiple heavy-atom reagents for macromolecular X-ray structure determination. Application to the nucleosome core particle. Journal of Molecular Biology. 194: 705-12. PMID 3656403 DOI: 10.1016/0022-2836(87)90248-8  1
1987 Richmond TJ. Protein--DNA interaction. Another folding problem? Nature. 326: 18-9. PMID 3029595 DOI: 10.1038/326018A0  1
1986 RICHMOND TJ, FINCH JT, KLUG A. The structure of the nucleosome core particle Biochemical Society Transactions. 14: 221-221. DOI: 10.1042/Bst0140221  0.01
1985 Klug A, Finch JT, Richmond TJ, Moudrianakis EN, Love WE, Wang BC, Xuong NG, Burlingame RW, Uberbacher EC, Bunick GJ. Crystallographic structure of the octamer histone core of the nucleosome Science. 229: 1109-1113. PMID 4035352 DOI: 10.1126/Science.229.4718.1112  1
1984 Richmond TJ. Solvent accessible surface area and excluded volume in proteins. Analytical equations for overlapping spheres and implications for the hydrophobic effect. Journal of Molecular Biology. 178: 63-89. PMID 6548264 DOI: 10.1016/0022-2836(84)90231-6  1
1984 Richmond TJ, Finch JT, Rushton B, Rhodes D, Klug A. Structure of the nucleosome core particle at 7 A resolution. Nature. 311: 532-7. PMID 6482966 DOI: 10.1038/311532A0  1
1983 Richmond TJ, Finch JT, Klug A. Studies of nucleosome structure. Cold Spring Harbor Symposia On Quantitative Biology. 47: 493-501. PMID 6574855  1
1981 Finch JT, Brown RS, Richmond T, Rushton B, Lutter LC, Klug A. X-ray diffraction study of a new crystal form of the nucleosome core showing higher resolution. Journal of Molecular Biology. 145: 757-69. PMID 7265219 DOI: 10.1016/0022-2836(81)90313-2  1
1981 Klug A, Finch JT, Brown RS, Rhodes D, Richmond T, Rushton B, Lutter LC, Bloomer AC. The structure of the nuclesome and the folding of chromatin Acta Crystallographica Section a Foundations of Crystallography. 37: C20-C20. DOI: 10.1107/S0108767381098978  0.04
1979 Cohen FE, Richmond TJ, Richards FM. Protein folding: evaluation of some simple rules for the assembly of helices into tertiary structures with myoglobin as an example. Journal of Molecular Biology. 132: 275-88. PMID 533892 DOI: 10.1016/0022-2836(79)90260-2  1
1978 Richmond TJ, Richards FM. Packing of alpha-helices: geometrical constraints and contact areas. Journal of Molecular Biology. 119: 537-55. PMID 642001 DOI: 10.1016/0022-2836(78)90201-2  1
1977 Richards FM, Richmond T. Solvents, interfaces and protein structure Ciba Foundation Symposium. 23-45. PMID 252454 DOI: 10.1002/9780470720424.ch2  1
1976 Richmond TJ, Steitz TA. Protein-DNA interaction investigated by binding Escherichia coli lac repressor protein to poly(d(A-U-HgX)). Journal of Molecular Biology. 103: 25-38. PMID 785008 DOI: 10.1016/0022-2836(76)90050-4  1
1974 Steitz TA, Richmond TJ, Wise D, Engelman D. The lac repressor protein: molecular shape, subunit structure, and proposed model for operator interaction based on structural studies of microcrystals. Proceedings of the National Academy of Sciences of the United States of America. 71: 593-7. PMID 4595565 DOI: 10.1073/Pnas.71.3.593  1
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