Matthew G. Seetin, Ph.D. - Publications
Affiliations: | 2011 | School of Medicine and Dentistry | University of Rochester, Rochester, NY |
Area:
General Biophysics, GeneticsYear | Citation | Score | |||
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2018 | Spasic A, Berger KD, Chen JL, Seetin MG, Turner DH, Mathews DH. Improving RNA nearest neighbor parameters for helices by going beyond the two-state model. Nucleic Acids Research. PMID 29718397 DOI: 10.1093/Nar/Gky270 | 0.62 | |||
2014 | Aytenfisu AH, Spasic A, Seetin MG, Serafini J, Mathews DH. Modified Amber Force Field Correctly Models the Conformational Preference for Tandem GA pairs in RNA. Journal of Chemical Theory and Computation. 10: 1292-1301. PMID 24803859 DOI: 10.1021/Ct400861G | 0.587 | |||
2014 | Seetin MG, Kladwang W, Bida JP, Das R. Massively parallel RNA chemical mapping with a reduced bias MAP-seq protocol. Methods in Molecular Biology (Clifton, N.J.). 1086: 95-117. PMID 24136600 DOI: 10.1007/978-1-62703-667-2_6 | 0.369 | |||
2013 | Bellaousov S, Reuter JS, Seetin MG, Mathews DH. RNAstructure: Web servers for RNA secondary structure prediction and analysis. Nucleic Acids Research. 41: W471-4. PMID 23620284 DOI: 10.1093/Nar/Gkt290 | 0.695 | |||
2012 | Seetin MG, Mathews DH. RNA structure prediction: an overview of methods. Methods in Molecular Biology (Clifton, N.J.). 905: 99-122. PMID 22736001 DOI: 10.1007/978-1-61779-949-5_8 | 0.703 | |||
2012 | Seetin MG, Mathews DH. TurboKnot: rapid prediction of conserved RNA secondary structures including pseudoknots. Bioinformatics (Oxford, England). 28: 792-8. PMID 22285566 DOI: 10.1093/Bioinformatics/Bts044 | 0.679 | |||
2011 | Seetin MG, Mathews DH. Automated RNA tertiary structure prediction from secondary structure and low-resolution restraints. Journal of Computational Chemistry. 32: 2232-44. PMID 21509787 DOI: 10.1002/Jcc.21806 | 0.693 | |||
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