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Steven Ole Nielsen - Related publications

Affiliations: 
Chemistry University of Texas at Dallas, Richardson, TX, United States 
Area:
Physical Chemistry, Molecular Chemistry, Nanoscience
Website:
http://www.utdallas.edu/chemistry/faculty/nielsen.html
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Chen CH, Starr CG, Guha S, Wimley WC, Ulmschneider MB, Ulmschneider JP. Tuning of a Membrane-Perforating Antimicrobial Peptide to Selectively Target Membranes of Different Lipid Composition. The Journal of Membrane Biology. PMID 33564914 DOI: 10.1007/s00232-021-00174-1   
2021 Chakraborty A, Kobzev E, Chan J, de Zoysa GH, Sarojini V, Piggot TJ, Allison JR. Molecular Dynamics Simulation of the Interaction of Two Linear Battacin Analogs with Model Gram-Positive and Gram-Negative Bacterial Cell Membranes. Acs Omega. 6: 388-400. PMID 33458490 DOI: 10.1021/acsomega.0c04752   
2021 Siwy CM, Delfing BM, Lockhart C, Smith AK, Klimov DK. Partitioning of Aβ Peptide Fragments into Blood-Brain Barrier Mimetic Bilayer. The Journal of Physical Chemistry. B. PMID 33656350 DOI: 10.1021/acs.jpcb.0c11253   
2021 Hazra R, Roy D. Distinctive Weak Interactions Underlie Diverse Nucleation and Small-Angle Scattering Behavior of Aqueous Cholesterol, Cholesteryl Hemisuccinate, and Glycocholic Acid. The Journal of Physical Chemistry. B. PMID 33417461 DOI: 10.1021/acs.jpcb.0c08931   
2021 Nunes LO, Munhoz VHO, Sousa AA, de Souza KR, Santos TL, Bemquerer MP, Ferreira DEC, de Magalhães MTQ, Resende JM, Alcântara AFC, Aisenbrey C, Veloso DP, Bechinger B, Verly RM. High-resolution structural profile of hylaseptin-4: Aggregation, membrane topology and pH dependence of overall membrane binding process. Biochimica Et Biophysica Acta. Biomembranes. 183581. PMID 33556358 DOI: 10.1016/j.bbamem.2021.183581   
2021 Valentine ML, Waterland MK, Fathizadeh A, Elber R, Baiz CR. Interfacial Dynamics in Lipid Membranes: The Effects of Headgroup Structures. The Journal of Physical Chemistry. B. 125: 1343-1350. PMID 33507760 DOI: 10.1021/acs.jpcb.0c08755   
2021 Kim SY, Bondar AN, Wimley WC, Hristova K. pH-triggered pore-forming peptides with strong composition-dependent membrane selectivity. Biophysical Journal. PMID 33460594 DOI: 10.1016/j.bpj.2021.01.010   
2021 Ma L, Luo Y, Ma YH, Lu X. Interaction between Antimicrobial Peptide CM15 and a Model Cell Membrane Affected by CM15 Terminal Amidation and the Membrane Phase State. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 33464910 DOI: 10.1021/acs.langmuir.0c03498   
2021 Simcock PW, Bublitz M, Cipcigan F, Ryadnov MG, Crain J, Stansfeld PJ, Sansom MSP. Membrane Binding of Antimicrobial Peptides Is Modulated by Lipid Charge Modification. Journal of Chemical Theory and Computation. PMID 33395285 DOI: 10.1021/acs.jctc.0c01025   
2021 Liao X, Purohit PK. Kinetics of self-assembly of inclusions due to lipid membrane thickness interactions. Soft Matter. PMID 33511382 DOI: 10.1039/d0sm01752c   
2021 Yu Y, Krämer A, Venable RM, Simmonett AC, MacKerell AD, Klauda JB, Pastor RW, Brooks BR. Semi-automated Optimization of the CHARMM36 Lipid Force Field to Include Explicit Treatment of Long-Range Dispersion. Journal of Chemical Theory and Computation. PMID 33620214 DOI: 10.1021/acs.jctc.0c01326   
2021 Zare M, Kitt JP, Wen X, Heider EC, Harris JM. Hybrid-Lipid Bilayers Induce -Alkyl-Chain Order in Reversed-Phase Chromatographic Surfaces, Impacting their Shape Selectivity for Aromatic Hydrocarbon Partitioning. Analytical Chemistry. PMID 33586951 DOI: 10.1021/acs.analchem.0c05467   
2021 Antila HS, M Ferreira T, Ollila OHS, Miettinen MS. Using Open Data to Rapidly Benchmark Biomolecular Simulations: Phospholipid Conformational Dynamics. Journal of Chemical Information and Modeling. PMID 33496579 DOI: 10.1021/acs.jcim.0c01299   
2021 Kundu S, Malik S, Ghosh M, Nandi S, Pyne A, Debnath A, Sarkar N. A Comparative Study on DMSO-Induced Modulation of the Structural and Dynamical Properties of Model Bilayer Membranes. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 33529530 DOI: 10.1021/acs.langmuir.0c03037   
2021 Yesylevskyy S, Khandelia H. EnCurv: Simple Technique of Maintaining Global Membrane Curvature in Molecular Dynamics Simulations. Journal of Chemical Theory and Computation. 17: 1181-1193. PMID 33513017 DOI: 10.1021/acs.jctc.0c00800   
2021 Shen S, Wang Y, Dong J, Zhang R, Parikh A, Chen JG, Hu D. Mimicking Thylakoid Membrane with Chlorophyll/TiO/Lipid Co-Assembly for Light-Harvesting and Oxygen Releasing. Acs Applied Materials & Interfaces. PMID 33634696 DOI: 10.1021/acsami.0c21662   
2021 Ma X, Zhu X, Huang C, Li Z, Fan J. Molecular mechanisms underlying the role of the puckered surface in the biocompatibility of black phosphorus. Nanoscale. PMID 33565554 DOI: 10.1039/d0nr08480h   
2021 Anton N, Pierrat P, Brou GA, Gbassi GK, Omran Z, Lebeau L, Vandamme TF, Bouriat P. The pH-Induced Specific Area Changes of Unsaturated Lipids Deposited onto a Bubble Interface. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 33577340 DOI: 10.1021/acs.langmuir.0c03046   
2021 Leonard AN, Lyman E. Activation of G-protein coupled receptors is thermodynamically linked to lipid solvation. Biophysical Journal. PMID 33640381 DOI: 10.1016/j.bpj.2021.02.029   
2021 Jarin Z, Newhouse J, Voth GA. Coarse-Grained Force Fields from the Perspective of Statistical Mechanics: Better Understanding of the Origins of a MARTINI Hangover. Journal of Chemical Theory and Computation. 17: 1170-1180. PMID 33475352 DOI: 10.1021/acs.jctc.0c00638   
2021 Ausili A, Rodríguez-González I, Torrecillas A, Teruel JA, Gómez-Fernández JC. Diethylstilbestrol Modifies the Structure of Model Membranes and Is Localized Close to the First Carbons of the Fatty Acyl Chains. Biomolecules. 11. PMID 33557377 DOI: 10.3390/biom11020220   
2021 Emmanuelle S, Astrid W, Sandrine S, Sophie C, Nicolas R. Binding and crossing: Methods for the characterization of membrane-active peptides interactions with membranes at the molecular level. Archives of Biochemistry and Biophysics. 699: 108751. PMID 33421380 DOI: 10.1016/j.abb.2021.108751   
2021 Sepehri A, Nepal B, Lazaridis T. Lipid interactions of an actinoporin pore-forming oligomer. Biophysical Journal. PMID 33617834 DOI: 10.1016/j.bpj.2021.02.015   
2021 Pluhackova K, Horner A. Native-like membrane models of E. coli polar lipid extract shed light on the importance of lipid composition complexity. Bmc Biology. 19: 4. PMID 33441107 DOI: 10.1186/s12915-020-00936-8   
2021 Luna E, Kim S, Gao Y, Widmalm G, Im W. Influences of Lipid A Types on LPS Bilayer Properties. The Journal of Physical Chemistry. B. PMID 33600188 DOI: 10.1021/acs.jpcb.0c09144   
2021 Hossein A, Deserno M. Stiffening transition in asymmetric lipid bilayers: The role of highly ordered domains and the effect of temperature and size. The Journal of Chemical Physics. 154: 014704. PMID 33412863 DOI: 10.1063/5.0028255   
2021 Rasouli A, Jamali Y, Tajkhorshid E, Bavi O, Pishkenari HN. Mechanical properties of ester- and ether-DPhPC bilayers: A molecular dynamics study. Journal of the Mechanical Behavior of Biomedical Materials. 117: 104386. PMID 33588213 DOI: 10.1016/j.jmbbm.2021.104386   
2021 Wu D, Zhao R, Chen Y, Wang Y, Li J, Fan Y. Molecular insights into MXene destructing the cell membrane as a "nano thermal blade". Physical Chemistry Chemical Physics : Pccp. PMID 33502424 DOI: 10.1039/d0cp05928e   
2021 Czekalska MA, Jacobs AMJ, Toprakcioglu Z, Kong L, Baumann KN, Gang H, Zubaite G, Ye R, Mu B, Levin A, Huck WTS, Knowles TPJ. One-Step Generation of Multisomes from Lipid-Stabilized Double Emulsions. Acs Applied Materials & Interfaces. PMID 33522221 DOI: 10.1021/acsami.0c16019   
2021 Czekalska MA, Jacobs AMJ, Toprakcioglu Z, Kong L, Baumann KN, Gang H, Zubaite G, Ye R, Mu B, Levin A, Huck WTS, Knowles TPJ. One-Step Generation of Multisomes from Lipid-Stabilized Double Emulsions. Acs Applied Materials & Interfaces. PMID 33522221 DOI: 10.1021/acsami.0c16019   
2021 Mersch K, Ozturk TN, Park K, Lim HH, Robertson JL. Altering CLC stoichiometry by reducing non-polar side-chains at the dimerization interface. Journal of Molecular Biology. 166886. PMID 33617898 DOI: 10.1016/j.jmb.2021.166886   
2021 Malajczuk CJ, Gandhi NS, Mancera RL. Structure and intermolecular interactions in spheroidal high-density lipoprotein subpopulations. Journal of Structural Biology: X. 5: 100042. PMID 33437963 DOI: 10.1016/j.yjsbx.2020.100042   
2021 Chen P, Vorobyov I, Roux B, Allen TW. Molecular Dynamics Simulations Based on Polarizable Models Show that Ion Permeation Interconverts between Different Mechanisms as a Function of Membrane Thickness. The Journal of Physical Chemistry. B. PMID 33493394 DOI: 10.1021/acs.jpcb.0c08613   
2021 Wang Q, Oshita K, Takaoka M. Effective lipid extraction from undewatered microalgae liquid using subcritical dimethyl ether. Biotechnology For Biofuels. 14: 17. PMID 33422122 DOI: 10.1186/s13068-020-01871-0   
2021 Loney RW, Brandner B, Dagan MP, Smith PN, Roche M, Fritz JR, Hall SB, Tristram-Nagle SA. Changes in membrane elasticity caused by the hydrophobic surfactant proteins correlate poorly with adsorption of lipid vesicles. Soft Matter. PMID 33630985 DOI: 10.1039/d0sm02223c   
2021 Maiti A, Daschakraborty S. Effect of TMAO on the Structure and Phase Transition of Lipid Membranes: Potential Role of TMAO in Stabilizing Cell Membranes under Osmotic Stress. The Journal of Physical Chemistry. B. 125: 1167-1180. PMID 33481606 DOI: 10.1021/acs.jpcb.0c08335   
2021 Beaven AH, Arnarez C, Lyman E, Bennett WFD, Sodt AJ. Curvature Energetics Determined by Alchemical Simulation on Four Topologically Distinct Lipid Phases. The Journal of Physical Chemistry. B. PMID 33570958 DOI: 10.1021/acs.jpcb.0c09458   
2021 Liu Y, Zou G, Gao H. Domain Aggregation and Associated Pore Growth in Lipid Membranes. Acs Nano. PMID 33405893 DOI: 10.1021/acsnano.0c06057   
2021 Gao Y, Lee J, Smith IPS, Lee H, Kim S, Qi Y, Klauda JB, Widmalm G, Khalid S, Im W. CHARMM-GUI Supports Hydrogen Mass Repartitioning and Different Protonation States of Phosphates in Lipopolysaccharides. Journal of Chemical Information and Modeling. PMID 33442985 DOI: 10.1021/acs.jcim.0c01360   
2021 Ferreira AR, Teixeira C, Sousa CF, Bessa LJ, Gomes P, Gameiro P. How Insertion of a Single Tryptophan in the N-Terminus of a Cecropin A-Melittin Hybrid Peptide Changes Its Antimicrobial and Biophysical Profile. Membranes. 11. PMID 33445476 DOI: 10.3390/membranes11010048   
2021 Wang Q, Oshita K, Takaoka M, Shiota K. Influence of water content and cell disruption on lipid extraction using subcritical dimethyl ether in wet microalgae. Bioresource Technology. 329: 124892. PMID 33676356 DOI: 10.1016/j.biortech.2021.124892   
2021 Federizon J, Feugmo CGT, Huang WC, He X, Miura K, Razi A, Ortega J, Karttunen M, Lovell JF. Experimental and Computational Observations of Immunogenic Cobalt Porphyrin Lipid Bilayers: Nanodomain-Enhanced Antigen Association. Pharmaceutics. 13. PMID 33466686 DOI: 10.3390/pharmaceutics13010098   
2021 Li J, Lu X, Ma W, Chen Z, Sun S, Wang Q, Yuan B, Yang K. Cholesterols Work as a Molecular Regulator of the Antimicrobial Peptide-Membrane Interactions. Frontiers in Molecular Biosciences. 8: 638988. PMID 33634166 DOI: 10.3389/fmolb.2021.638988   
2021 Rehal R, Barker RD, Lu Z, Bui TT, Demé B, Hause G, Wölk C, Harvey RD. Lipid domain formation and non-lamellar structures associated with varied lysylphosphatidylglycerol analogue content in a model Staphylococcal plasma membrane. Biochimica Et Biophysica Acta. Biomembranes. 183571. PMID 33561475 DOI: 10.1016/j.bbamem.2021.183571   
2021 Ghanem HA, Nasr AM, Hassan TH, Elkhoudary MM, Alshaman R, Alattar A, Gad S. Comprehensive Study of Atorvastatin Nanostructured Lipid Carriers through Multivariate Conceptualization and Optimization. Pharmaceutics. 13. PMID 33525642 DOI: 10.3390/pharmaceutics13020178   
2021 Havlíková M, Szabová J, Mravcová L, Venerová T, Chang CH, Pekař M, Jugl A, Mravec F. Cholesterol Effect on Membrane Properties of Cationic Ion Pair Amphiphile Vesicles at Different Temperatures. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 33545006 DOI: 10.1021/acs.langmuir.0c03504   
2021 Banerjee S, Hashemi M, Zagorski K, Lyubchenko YL. Cholesterol in Membranes Facilitates Aggregation of Amyloid β Protein at Physiologically Relevant Concentrations. Acs Chemical Neuroscience. PMID 33492944 DOI: 10.1021/acschemneuro.0c00688   
2021 Ripanti F, Di Venere A, Cestelli Guidi M, Romani M, Filabozzi A, Carbonaro M, Piro MC, Sinibaldi F, Nucara A, Mei G. The Puzzling Problem of Cardiolipin Membrane-Cytochrome c Interactions: A Combined Infrared and Fluorescence Study. International Journal of Molecular Sciences. 22. PMID 33572777 DOI: 10.3390/ijms22031334   
2021 Ripanti F, Di Venere A, Cestelli Guidi M, Romani M, Filabozzi A, Carbonaro M, Piro MC, Sinibaldi F, Nucara A, Mei G. The Puzzling Problem of Cardiolipin Membrane-Cytochrome c Interactions: A Combined Infrared and Fluorescence Study. International Journal of Molecular Sciences. 22. PMID 33572777 DOI: 10.3390/ijms22031334   
2021 Matsubara T, IIjima K, Kojima T, Hirai M, Miyamoto E, Sato T. Heterogeneous Ganglioside-Enriched Nanoclusters with Different Densities in Membrane Rafts Detected by a Peptidyl Molecular Probe. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 33398996 DOI: 10.1021/acs.langmuir.0c02387