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David P. Barondeau - Publications

Affiliations: 
Texas A & M University, College Station, TX, United States 
Area:
Biochemistry
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37/41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Lin CW, Oney-Hawthorne SD, Kuo ST, Barondeau DP, Russell DH. Mechanistic Insights into IscU Conformation Regulation for Fe-S Cluster Biogenesis Revealed by Variable Temperature Electrospray Ionization Native Ion Mobility Mass Spectrometry. Biochemistry. PMID 36351081 DOI: 10.1021/acs.biochem.2c00429  0.433
2020 Lin CW, McCabe JW, Russell DH, Barondeau DP. Molecular mechanism of ISC iron-sulfur cluster biogenesis revealed by high-resolution native mass spectrometry. Journal of the American Chemical Society. PMID 32131593 DOI: 10.1021/Jacs.9B11454  0.546
2019 Patra S, Barondeau DP. Mechanism of activation of the human cysteine desulfurase complex by frataxin. Proceedings of the National Academy of Sciences of the United States of America. 116: 19421-19430. PMID 31511419 DOI: 10.1073/Pnas.1909535116  0.548
2019 Hogancamp TN, Cory SA, Barondeau DP, Raushel FM. Structure and Chemical Reaction Mechanism of LigU, an Enzyme that Catalyzes an Allylic Isomerization in the Bacterial Degradation of Lignin. Biochemistry. PMID 31339729 DOI: 10.1021/Acs.Biochem.9B00549  0.323
2019 Ast T, Meisel JD, Patra S, Wang H, Grange RMH, Kim SH, Calvo SE, Orefice LL, Nagashima F, Ichinose F, Zapol WM, Ruvkun G, Barondeau DP, Mootha VK. Hypoxia Rescues Frataxin Loss by Restoring Iron Sulfur Cluster Biogenesis. Cell. PMID 31031004 DOI: 10.1016/J.Cell.2019.03.045  0.486
2019 Das D, Patra S, Bridwell-Rabb J, Barondeau DP. Mechanism of frataxin "bypass" in human iron-sulfur cluster biosynthesis with implications for Friedreich's ataxia. The Journal of Biological Chemistry. PMID 30975898 DOI: 10.1074/Jbc.Ra119.007716  0.775
2018 Cory SA, Van Vranken JG, Brignole EJ, Patra S, Winge DR, Drennan CL, Rutter J, Barondeau DP. Structure of the human Fe–S cluster assembly sub-complex: implications in Friedreich's ataxia and primary metabolism Acta Crystallographica Section a Foundations and Advances. 74: a80-a80. DOI: 10.1107/S0108767318099191  0.606
2017 Cory SA, Van Vranken JG, Brignole EJ, Patra S, Winge DR, Drennan CL, Rutter J, Barondeau DP. Structure of human Fe-S assembly subcomplex reveals unexpected cysteine desulfurase architecture and acyl-ACP-ISD11 interactions. Proceedings of the National Academy of Sciences of the United States of America. PMID 28634302 DOI: 10.1073/Pnas.1702849114  0.699
2017 Cory SA, Van Vranken JG, Brignole EJ, Patra S, Winge DR, Drennan CL, Rutter J, Barondeau DP. Structure of human Fe–S assembly sub-complex Acta Crystallographica Section a Foundations and Advances. 73: a113-a113. DOI: 10.1107/S0108767317098877  0.541
2016 Vranish JN, Das D, Barondeau DP. Real-time kinetic probes support monothiol glutaredoxins as intermediate carriers in Fe-S cluster biosynthetic pathways. Acs Chemical Biology. PMID 27653419 DOI: 10.1021/Acschembio.6B00632  0.542
2015 Fox NG, Das D, Chakrabarti M, Lindahl PA, Barondeau DP. Frataxin Accelerates [2Fe-2S] Cluster Formation on the Human Fe-S Assembly Complex. Biochemistry. PMID 26016518 DOI: 10.1021/Bi5014497  0.704
2015 Fox NG, Chakrabarti M, McCormick SP, Lindahl PA, Barondeau DP. The Human Iron-Sulfur Assembly Complex Catalyzes the Synthesis of [2Fe-2S] Clusters on ISCU2 That Can Be Transferred to Acceptor Molecules. Biochemistry. 54: 3871-9. PMID 26016389 DOI: 10.1021/Bi5014485  0.697
2015 Vranish JN, Russell WK, Yu LE, Cox RM, Russell DH, Barondeau DP. Fluorescent probes for tracking the transfer of iron-sulfur cluster and other metal cofactors in biosynthetic reaction pathways. Journal of the American Chemical Society. 137: 390-8. PMID 25478817 DOI: 10.1021/Ja510998S  0.528
2015 Fox NG, Chakrabarti M, McCormick SP, Lindahl PA, Barondeau DP. The Human Iron-Sulfur Assembly Complex Catalyzes the Synthesis of [2Fe-2S] Clusters on ISCU2 That Can Be Transferred to Acceptor Molecules Biochemistry. 54: 3871-3879. DOI: 10.1021/bi5014485  0.649
2014 Bridwell-Rabb J, Fox NG, Tsai CL, Winn AM, Barondeau DP. Human frataxin activates Fe-S cluster biosynthesis by facilitating sulfur transfer chemistry. Biochemistry. 53: 4904-13. PMID 24971490 DOI: 10.1021/Bi500532E  0.774
2013 Meier MM, Rajendran C, Malisi C, Fox NG, Xu C, Schlee S, Barondeau DP, Höcker B, Sterner R, Raushel FM. Molecular engineering of organophosphate hydrolysis activity from a weak promiscuous lactonase template. Journal of the American Chemical Society. 135: 11670-7. PMID 23837603 DOI: 10.1021/Ja405911H  0.319
2012 Bridwell-Rabb J, Iannuzzi C, Pastore A, Barondeau DP. Effector role reversal during evolution: the case of frataxin in Fe-S cluster biosynthesis. Biochemistry. 51: 2506-14. PMID 22352884 DOI: 10.1021/Bi201628J  0.768
2011 Bridwell-Rabb J, Winn AM, Barondeau DP. Structure-function analysis of Friedreich's ataxia mutants reveals determinants of frataxin binding and activation of the Fe-S assembly complex. Biochemistry. 50: 7265-74. PMID 21776984 DOI: 10.1021/Bi200895K  0.74
2011 Tsai CL, Bridwell-Rabb J, Barondeau DP. Friedreich's ataxia variants I154F and W155R diminish frataxin-based activation of the iron-sulfur cluster assembly complex. Biochemistry. 50: 6478-87. PMID 21671584 DOI: 10.1021/Bi200666H  0.77
2010 Tsai CL, Barondeau DP. Human frataxin is an allosteric switch that activates the Fe-S cluster biosynthetic complex. Biochemistry. 49: 9132-9. PMID 20873749 DOI: 10.1021/Bi1013062  0.547
2010 Wood TL, Bridwell-Rabb J, Kim YI, Gao T, Chang YG, LiWang A, Barondeau DP, Golden SS. The KaiA protein of the cyanobacterial circadian oscillator is modulated by a redox-active cofactor. Proceedings of the National Academy of Sciences of the United States of America. 107: 5804-9. PMID 20231482 DOI: 10.1073/Pnas.0910141107  0.683
2009 Shin DS, Didonato M, Barondeau DP, Hura GL, Hitomi C, Berglund JA, Getzoff ED, Cary SC, Tainer JA. Superoxide dismutase from the eukaryotic thermophile Alvinella pompejana: structures, stability, mechanism, and insights into amyotrophic lateral sclerosis. Journal of Molecular Biology. 385: 1534-55. PMID 19063897 DOI: 10.1016/J.Jmb.2008.11.031  0.573
2009 Shin DS, DiDonato M, Barondeau DP, Hura GL, Hitomi C, Berglund JA, Getzoff ED, Cary SC, Tainer JA. Superoxide Dismutase Structures, Stability, Mechanism and Insights into the Human Disease Amyotrophic Lateral Sclerosis from Eukaryotic Thermophile Alvinella pompejana Journal of Molecular Biology. 385: 1534. DOI: 10.1016/J.Jmb.2008.11.03  0.57
2007 Barondeau DP, Kassmann CJ, Tainer JA, Getzoff ED. The case of the missing ring: radical cleavage of a carbon-carbon bond and implications for GFP chromophore biosynthesis. Journal of the American Chemical Society. 129: 3118-26. PMID 17326633 DOI: 10.1021/Ja063983U  0.564
2006 Barondeau DP, Kassmann CJ, Tainer JA, Getzoff ED. Understanding GFP posttranslational chemistry: structures of designed variants that achieve backbone fragmentation, hydrolysis, and decarboxylation. Journal of the American Chemical Society. 128: 4685-93. PMID 16594705 DOI: 10.1021/Ja056635L  0.547
2006 Barondeau DP, Tainer JA, Getzoff ED. Structural evidence for an enolate intermediate in GFP fluorophore biosynthesis. Journal of the American Chemical Society. 128: 3166-8. PMID 16522096 DOI: 10.1021/Ja0552693  0.575
2005 Wood TI, Barondeau DP, Hitomi C, Kassmann CJ, Tainer JA, Getzoff ED. Defining the role of arginine 96 in green fluorescent protein fluorophore biosynthesis. Biochemistry. 44: 16211-20. PMID 16331981 DOI: 10.1021/Bi051388J  0.54
2005 Barondeau DP, Kassmann CJ, Tainer JA, Getzoff ED. Understanding GFP chromophore biosynthesis: controlling backbone cyclization and modifying post-translational chemistry. Biochemistry. 44: 1960-70. PMID 15697221 DOI: 10.1021/Bi0479205  0.569
2004 Barondeau DP, Getzoff ED. Structural insights into protein-metal ion partnerships. Current Opinion in Structural Biology. 14: 765-74. PMID 15582401 DOI: 10.1016/J.Sbi.2004.10.012  0.533
2004 Barondeau DP, Kassmann CJ, Bruns CK, Tainer JA, Getzoff ED. Nickel superoxide dismutase structure and mechanism. Biochemistry. 43: 8038-47. PMID 15209499 DOI: 10.1021/Bi0496081  0.588
2003 Barondeau DP, Putnam CD, Kassmann CJ, Tainer JA, Getzoff ED. Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures. Proceedings of the National Academy of Sciences of the United States of America. 100: 12111-6. PMID 14523232 DOI: 10.1073/Pnas.2133463100  0.563
2002 Barondeau DP, Kassmann CJ, Tainer JA, Getzoff ED. Structural chemistry of a green fluorescent protein Zn biosensor. Journal of the American Chemical Society. 124: 3522-4. PMID 11929238 DOI: 10.1021/Ja0176954  0.531
1997 Barondeau DP, Lindahl PA. Methylation of carbon monoxide dehydrogenase from Clostridium thermoaceticum and mechanism of acetyl coenzyme A synthesis Journal of the American Chemical Society. 119: 3959-3970. DOI: 10.1021/Ja963597K  0.611
1995 Xia J, Hu E, Anderson ME, Barondeau DP, Russell WK, Sinclair J, Dong J, Wang S, Scott RA, Baldwin TO, Münck E, Lindahl PA. The nickel and iron-sulfur centers in carbon monoxide dehydrogenase Journal of Inorganic Biochemistry. 59: 634. DOI: 10.1016/0162-0134(95)97723-4  0.642
1994 Barondeau DP, Roberts LM, Lindahl PA. Stability of the Ni-C state and oxidative titrations of Desulfovibrio gigas hydrogenase monitored by EPR and electronic absorption spectroscopies Journal of the American Chemical Society. 116: 3442-3448. DOI: 10.1021/Ja00087A033  0.639
1993 Barondeau DP, Roberts L, Lindahl PA. Oxidative titrations of Desulfovibrio gigas hydrogen monitored by EPR and electronic absorption spectroscopies Journal of Inorganic Biochemistry. 51: 53. DOI: 10.1016/0162-0134(93)85091-L  0.521
1993 Roberts L, Barondeau D, Lindahl P. Stability and redox potential of NiC from nickel—iron hydrogenase Journal of Inorganic Biochemistry. 51: 52. DOI: 10.1016/0162-0134(93)85090-U  0.545
Low-probability matches (unlikely to be authored by this person)
2010 Cummings JA, Nguyen TT, Fedorov AA, Kolb P, Xu C, Fedorov EV, Shoichet BK, Barondeau DP, Almo SC, Raushel FM. Structure, mechanism, and substrate profile for Sco3058: the closest bacterial homologue to human renal dipeptidase . Biochemistry. 49: 611-22. PMID 20000809 DOI: 10.1021/Bi901935Y  0.298
2012 Tsai PC, Fox N, Bigley AN, Harvey SP, Barondeau DP, Raushel FM. Enzymes for the homeland defense: optimizing phosphotriesterase for the hydrolysis of organophosphate nerve agents. Biochemistry. 51: 6463-75. PMID 22809162 DOI: 10.1021/Bi300811T  0.292
2021 McCabe JW, Shirzadeh M, Walker TE, Lin CW, Jones BJ, Wysocki VH, Barondeau DP, Clemmer DE, Laganowsky A, Russell DH. Variable-Temperature Electrospray Ionization for Temperature-Dependent Folding/Refolding Reactions of Proteins and Ligand Binding. Analytical Chemistry. PMID 33904705 DOI: 10.1021/acs.analchem.1c00870  0.173
2023 Zulkifli M, Spelbring AN, Zhang Y, Soma S, Chen S, Li L, Le T, Shanbhag V, Petris MJ, Chen TY, Ralle M, Barondeau DP, Gohil VM. FDX1-dependent and independent mechanisms of elesclomol-mediated intracellular copper delivery. Proceedings of the National Academy of Sciences of the United States of America. 120: e2216722120. PMID 36848556 DOI: 10.1073/pnas.2216722120  0.088
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