| Year |
Citation |
Score |
| 2024 |
Ryazansky SS, Chen C, Potters M, Naumenko AN, Lukyanchikova V, Masri RA, Brusentsov II, Karagodin DA, Yurchenko AA, Dos Anjos VL, Haba Y, Rose NH, Hoffman J, Guo R, Menna T, ... ... Emrich S, et al. The chromosome-scale genome assembly for the West Nile vector Culex quinquefasciatus uncovers patterns of genome evolution in mosquitoes. Bmc Biology. 22: 16. PMID 38273363 DOI: 10.1186/s12915-024-01825-0 |
0.36 |
|
| 2023 |
Labbé F, Abdeladhim M, Abrudan J, Araki AS, Araujo RN, Arensburger P, Benoit JB, Brazil RP, Bruno RV, Bueno da Silva Rivas G, Carvalho de Abreu V, Charamis J, Coutinho-Abreu IV, da Costa-Latgé SG, Darby A, ... ... Emrich SJ, et al. Genomic analysis of two phlebotomine sand fly vectors of leishmania from the new and old World. Plos Neglected Tropical Diseases. 17: e0010862. PMID 37043542 DOI: 10.1371/journal.pntd.0010862 |
0.313 |
|
| 2023 |
Small ST, Costantini C, Sagnon N, Guelbeogo MW, Emrich SJ, Kern AD, Fontaine MC, Besansky NJ. Standing genetic variation and chromosome differences drove rapid ecotype formation in a major malaria mosquito. Proceedings of the National Academy of Sciences of the United States of America. 120: e2219835120. PMID 36881629 DOI: 10.1073/pnas.2219835120 |
0.332 |
|
| 2021 |
Nowling RJ, Behura SK, Halfon MS, Emrich SJ, Duman-Scheel M. PeakMatcher facilitates updated Aedes aegypti embryonic cis-regulatory element map. Hereditas. 158: 7. PMID 33509290 DOI: 10.1186/s41065-021-00172-2 |
0.368 |
|
| 2020 |
Faisal FE, Newaz K, Chaney JL, Li J, Emrich SJ, Clark PL, Milenković T. Author Correction: GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison. Scientific Reports. 10: 13455. PMID 32778675 DOI: 10.1038/S41598-020-69025-8 |
0.308 |
|
| 2020 |
Newaz K, Wright G, Piland J, Li J, Clark P, Emrich S, Milenković T. Network analysis of synonymous codon usage. Bioinformatics (Oxford, England). PMID 32609328 DOI: 10.1093/Bioinformatics/Btaa603 |
0.338 |
|
| 2020 |
Molik DC, Pfrender ME, Emrich SJ. Uncovering Effects from the Structure of Metabarcode Sequences for Metagenetic and Microbiome Analysis. Methods and Protocols. 3. PMID 32178466 DOI: 10.3390/mps3010022 |
0.355 |
|
| 2020 |
Waterhouse RM, Aganezov S, Anselmetti Y, Lee J, Ruzzante L, Reijnders MJMF, Feron R, Bérard S, George P, Hahn MW, Howell PI, Kamali M, Koren S, Lawson D, Maslen G, ... ... Emrich SJ, et al. Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies. Bmc Biology. 18: 1. PMID 31898513 DOI: 10.1186/S12915-019-0728-3 |
0.434 |
|
| 2019 |
Li X, Kumar S, McDew-White M, Haile M, Cheeseman IH, Emrich S, Button-Simons K, Nosten F, Kappe SHI, Ferdig MT, Anderson TJC, Vaughan AM. Genetic mapping of fitness determinants across the malaria parasite Plasmodium falciparum life cycle. Plos Genetics. 15: e1008453. PMID 31609965 DOI: 10.1371/Journal.Pgen.1008453 |
0.379 |
|
| 2018 |
Choudhury O, Chakrabarty A, Emrich SJ. HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning. Scientific Reports. 8: 9936. PMID 29967328 DOI: 10.1038/S41598-018-28364-3 |
0.35 |
|
| 2018 |
Ryan SF, Deines JM, Scriber JM, Pfrender ME, Jones SE, Emrich SJ, Hellmann JJ. Climate-mediated hybrid zone movement revealed with genomics, museum collection, and simulation modeling. Proceedings of the National Academy of Sciences of the United States of America. PMID 29463695 DOI: 10.1073/Pnas.1714950115 |
0.33 |
|
| 2018 |
Chen DZ, Emrich SJ, Zhu S. Inversion detection using PacBio long reads International Journal of Data Mining and Bioinformatics. 20: 230. DOI: 10.1504/Ijdmb.2018.10016078 |
0.346 |
|
| 2017 |
Zhu S, Chen DZ, Emrich SJ. Single molecule sequencing-guided scaffolding and correction of draft assemblies. Bmc Genomics. 18: 879. PMID 29244003 DOI: 10.1186/S12864-017-4271-8 |
0.486 |
|
| 2017 |
Faisal FE, Newaz K, Chaney JL, Li J, Emrich SJ, Clark PL, Milenković T. GRAFENE: Graphlet-based alignment-free network approach integrates 3D structural and sequence (residue order) data to improve protein structural comparison. Scientific Reports. 7: 14890. PMID 29097661 DOI: 10.1038/S41598-017-14411-Y |
0.337 |
|
| 2017 |
Rodriguez A, Wright G, Emrich S, Clark PL. %MinMax: A Versatile Tool for Calculating and Comparing Synonymous Codon Usage and Its Impact on Protein Folding. Protein Science : a Publication of the Protein Society. PMID 29090506 DOI: 10.1002/Pro.3336 |
0.4 |
|
| 2017 |
Horsman ME, Marous DR, Li R, Oliver RA, Byun B, Emrich SJ, Boggess B, Townsend CA, Mobashery S. Whole-Genome Shotgun Sequencing and Comparison of Two β-Proteobacterial Species in Search of the Bulgecin Biosynthetic Cluster. Acs Chemical Biology. PMID 28937735 DOI: 10.1021/Acschembio.7B00687 |
0.354 |
|
| 2017 |
Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, ... ... Emrich S, et al. Corrigendum: Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Nature Communications. 8: 16153. PMID 28832025 DOI: 10.1038/Ncomms16153 |
0.404 |
|
| 2017 |
Choudhury O, Chakrabarty A, Emrich SJ. Highly Accurate and Efficient Data-Driven Methods For Genotype Imputation. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 28574365 DOI: 10.1109/Tcbb.2017.2708701 |
0.332 |
|
| 2017 |
Konar A, Choudhury O, Bullis R, Fiedler L, Kruser JM, Stephens MT, Gailing O, Schlarbaum S, Coggeshall MV, Staton ME, Carlson JE, Emrich S, Romero-Severson J. High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra. Bmc Genomics. 18: 417. PMID 28558688 DOI: 10.1186/S12864-017-3765-8 |
0.375 |
|
| 2017 |
Adema CM, Hillier LW, Jones CS, Loker ES, Knight M, Minx P, Oliveira G, Raghavan N, Shedlock A, do Amaral LR, Arican-Goktas HD, Assis JG, Baba EH, Baron OL, Bayne CJ, ... ... Emrich S, et al. Whole genome analysis of a schistosomiasis-transmitting freshwater snail. Nature Communications. 8: 15451. PMID 28508897 DOI: 10.1038/Ncomms15451 |
0.388 |
|
| 2017 |
Chaney JL, Steele A, Carmichael R, Rodriguez A, Specht AT, Ngo K, Li J, Emrich S, Clark PL. Widespread position-specific conservation of synonymous rare codons within coding sequences. Plos Computational Biology. 13: e1005531. PMID 28475588 DOI: 10.1371/Journal.Pcbi.1005531 |
0.37 |
|
| 2016 |
Love RR, Steele AM, Coulibaly MB, Traore SF, Emrich SJ, Fontaine MC, Besansky NJ. Chromosomal inversions and ecotypic differentiation in Anopheles gambiae: the perspective from whole-genome sequencing. Molecular Ecology. PMID 27759895 DOI: 10.1111/Mec.13888 |
0.505 |
|
| 2016 |
Siwo G, Rider A, Tan A, Pinapati R, Emrich S, Chawla N, Ferdig M. Prediction of fine-tuned promoter activity from DNA sequence. F1000research. 5: 158. PMID 27347373 DOI: 10.12688/F1000Research.7485.1 |
0.378 |
|
| 2016 |
Behura SK, Sarro J, Li P, Mysore K, Severson DW, Emrich SJ, Duman-Scheel M. High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti. Bmc Genomics. 17: 341. PMID 27161480 DOI: 10.1186/S12864-016-2468-X |
0.423 |
|
| 2016 |
Hall AB, Papathanos PA, Sharma A, Cheng C, Akbari OS, Assour L, Bergman NH, Cagnetti A, Crisanti A, Dottorini T, Fiorentini E, Galizi R, Hnath J, Jiang X, Koren S, ... ... Emrich SJ, et al. Radical remodeling of the Y chromosome in a recent radiation of malaria mosquitoes. Proceedings of the National Academy of Sciences of the United States of America. PMID 27035980 DOI: 10.1073/Pnas.1525164113 |
0.417 |
|
| 2016 |
Mesquita RD, Vionette-Amaral RJ, Lowenberger C, Rivera-Pomar R, Monteiro FA, Minx P, Spieth J, Carvalho AB, Panzera F, Lawson D, Torres AQ, Ribeiro JMC, Sorgine MHF, Waterhouse RM, Montague MJ, ... ... Emrich SJ, et al. Erratum: Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection (Proceedings of the National Academy of Sciences of the United States of America (2015) 112 (14936-14941) DOI 10.1073/pnas.1506226112) Proceedings of the National Academy of Sciences of the United States of America. 113. PMID 26929356 DOI: 10.1073/Pnas.1600205113 |
0.344 |
|
| 2015 |
Mesquita RD, Vionette-Amaral RJ, Lowenberger C, Rivera-Pomar R, Monteiro FA, Minx P, Spieth J, Carvalho AB, Panzera F, Lawson D, Torres AQ, Ribeiro JM, Sorgine MH, Waterhouse RM, Montague MJ, ... ... Emrich SJ, et al. Genome of Rhodnius prolixus, an insect vector of Chagas disease, reveals unique adaptations to hematophagy and parasite infection. Proceedings of the National Academy of Sciences of the United States of America. 112: 14936-14941. PMID 26627243 DOI: 10.1073/Pnas.1506226112 |
0.48 |
|
| 2015 |
Egan SP, Ragland GJ, Assour L, Powell TH, Hood GR, Emrich S, Nosil P, Feder JL. Experimental evidence of genome-wide impact of ecological selection during early stages of speciation-with-gene-flow. Ecology Letters. PMID 26077935 DOI: 10.1111/Ele.12460 |
0.455 |
|
| 2015 |
Ramalho-Ortigão M, Coutinho-Abreu IV, Balbino VQ, Figueiredo CA, Mukbel R, Dayem H, Hanafi HA, El-Hossary SS, Fawaz Eel-D, Abo-Shehada M, Hoel DF, Stayback G, Wadsworth M, Shoue DA, Abrudan J, ... ... Emrich SJ, et al. Phlebotomus papatasi SP15: mRNA expression variability and amino acid sequence polymorphisms of field populations. Parasites & Vectors. 8: 298. PMID 26022221 DOI: 10.1186/S13071-015-0914-2 |
0.328 |
|
| 2015 |
Warren AS, Aurrecoechea C, Brunk B, Desai P, Emrich S, Giraldo-Calderón GI, Harb O, Hix D, Lawson D, Machi D, Mao C, McClelland M, Nordberg E, Shukla M, Vosshall LB, et al. RNA-Rocket: an RNA-Seq analysis resource for infectious disease research. Bioinformatics (Oxford, England). 31: 1496-8. PMID 25573919 DOI: 10.1093/Bioinformatics/Btv002 |
0.32 |
|
| 2015 |
Neafsey DE, Waterhouse RM, Abai MR, Aganezov SS, Alekseyev MA, Allen JE, Amon J, Arcà B, Arensburger P, Artemov G, Assour LA, Basseri H, Berlin A, Birren BW, Blandin SA, ... ... Emrich SJ, et al. Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes. Science (New York, N.Y.). 347: 1258522. PMID 25554792 DOI: 10.1126/Science.1258522 |
0.503 |
|
| 2015 |
Giraldo-Calderón GI, Emrich SJ, MacCallum RM, Maslen G, Dialynas E, Topalis P, Ho N, Gesing S, Madey G, Collins FH, Lawson D. VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases. Nucleic Acids Research. 43: D707-13. PMID 25510499 DOI: 10.1093/Nar/Gku1117 |
0.421 |
|
| 2015 |
Fontaine MC, Pease JB, Steele A, Waterhouse RM, Neafsey DE, Sharakhov IV, Jiang X, Hall AB, Catteruccia F, Kakani E, Mitchell SN, Wu YC, Smith HA, Love RR, Lawniczak MK, ... ... Emrich SJ, et al. Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics. Science (New York, N.Y.). 347: 1258524. PMID 25431491 DOI: 10.1126/Science.1258524 |
0.426 |
|
| 2015 |
Choudhury O, Hazekamp NL, Thain D, Emrich SJ. Accelerating comparative genomics workflows in a distributed environment with optimized data partitioning and workflow fusion Scalable Computing. 16: 53-69. DOI: 10.12694/Scpe.V16I1.1060 |
0.411 |
|
| 2015 |
Assour LA, Emrich SJ. Global maximum-parsimony based ancestral reconstruction with non-universal genes 2015 Ieee 5th International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2015. DOI: 10.1109/ICCABS.2015.7344716 |
0.343 |
|
| 2015 |
Aganezov S, Sitdykova N, Alekseyev MA, Neafsey DE, Christophides GK, Collins FH, Emrich SJ, Fontaine MC, Gelbart W, Hahn MW, Howell PI, Kafatos FC, Lawson D, Muskavitch MAT, Waterhouse R, et al. Scaffold assembly based on genome rearrangement analysis Computational Biology and Chemistry. 57: 46-53. DOI: 10.1016/j.compbiolchem.2015.02.005 |
0.355 |
|
| 2015 |
Steele A, Emrich SJ. PbSandwich: Scaffolding draft genomes with long reads Proceedings of the 7th International Conference On Bioinformatics and Computational Biology, Bicob 2015. 155-160. |
0.323 |
|
| 2015 |
Assour LA, Emrich SJ. Multi-genome synteny for assembly improvement Proceedings of the 7th International Conference On Bioinformatics and Computational Biology, Bicob 2015. 193-198. |
0.401 |
|
| 2014 |
Jiang X, Peery A, Hall AB, Sharma A, Chen XG, Waterhouse RM, Komissarov A, Riehle MM, Shouche Y, Sharakhova MV, Lawson D, Pakpour N, Arensburger P, Davidson VL, Eiglmeier K, ... Emrich S, et al. Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi. Genome Biology. 15: 459. PMID 25244985 DOI: 10.1186/S13059-014-0459-2 |
0.334 |
|
| 2014 |
Zhang W, Zeng E, Liu D, Jones SE, Emrich S. Mapping genomic features to functional traits through microbial whole genome sequences. International Journal of Bioinformatics Research and Applications. 10: 461-78. PMID 24989863 DOI: 10.1504/Ijbra.2014.062995 |
0.462 |
|
| 2014 |
Thrasher A, Musgrave Z, Kachmarck B, Thain D, Emrich S. Scaling up genome annotation using MAKER and work queue International Journal of Bioinformatics Research and Applications. 10: 447-460. PMID 24989862 DOI: 10.1504/Ijbra.2014.062994 |
0.447 |
|
| 2014 |
Dugan VG, Emrich SJ, Giraldo-Calderón GI, Harb OS, Newman RM, Pickett BE, Schriml LM, Stockwell TB, Stoeckert CJ, Sullivan DE, Singh I, Ward DV, Yao A, Zheng J, Barrett T, et al. Standardized metadata for human pathogen/vector genomic sequences. Plos One. 9: e99979. PMID 24936976 DOI: 10.1371/Journal.Pone.0099979 |
0.488 |
|
| 2014 |
O'Neil ST, Dzurisin JD, Williams CM, Lobo NF, Higgins JK, Deines JM, Carmichael RD, Zeng E, Tan JC, Wu GC, Emrich SJ, Hellmann JJ. Gene expression in closely related species mirrors local adaptation: consequences for responses to a warming world. Molecular Ecology. 23: 2686-98. PMID 24766086 DOI: 10.1111/Mec.12773 |
0.69 |
|
| 2014 |
Geng P, Li W, Lin L, de Miranda JR, Emrich S, An L, Terenius O. Genetic characterization of a novel Iflavirus associated with vomiting disease in the Chinese oak silkmoth Antheraea pernyi. Plos One. 9: e92107. PMID 24637949 DOI: 10.1371/Journal.Pone.0092107 |
0.38 |
|
| 2014 |
Livermore JA, Emrich SJ, Tan J, Jones SE. Freshwater bacterial lifestyles inferred from comparative genomics. Environmental Microbiology. 16: 746-58. PMID 23889754 DOI: 10.1111/1462-2920.12199 |
0.493 |
|
| 2014 |
Choudhury O, Hazekamp NL, Thain D, Emrich S. Accelerating comparative genomics workflows in a distributed environment with optimized data partitioning Proceedings - 14th Ieee/Acm International Symposium On Cluster, Cloud, and Grid Computing, Ccgrid 2014. 711-719. DOI: 10.1109/CCGrid.2014.79 |
0.313 |
|
| 2014 |
Lanc I, Bui P, Thain D, Emrich S. Adapting bioinformatics applications for heterogeneous systems: A case study Concurrency Computation Practice and Experience. 26: 866-877. DOI: 10.1002/Cpe.2927 |
0.311 |
|
| 2013 |
Evans JD, Brown SJ, Hackett KJJ, Robinson G, Richards S, Lawson D, Elsik C, Coddington J, Edwards O, Emrich S, Gabaldon T, Goldsmith M, Hanes G, Misof B, Muñoz-Torres M, et al. The i5K initiative: Advancing arthropod genomics for knowledge, human health, agriculture, and the environment Journal of Heredity. 104: 595-600. PMID 23940263 DOI: 10.1093/Jhered/Est050 |
0.446 |
|
| 2013 |
Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, ... ... Emrich S, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2: 10. PMID 23870653 DOI: 10.1186/2047-217X-2-10 |
0.527 |
|
| 2013 |
O'Neil ST, Emrich SJ. Assessing De Novo transcriptome assembly metrics for consistency and utility. Bmc Genomics. 14: 465. PMID 23837739 DOI: 10.1186/1471-2164-14-465 |
0.712 |
|
| 2013 |
Neafsey DE, Christophides GK, Collins FH, Emrich SJ, Fontaine MC, Gelbart W, Hahn MW, Howell PI, Kafatos FC, Lawson D, Muskavitch MA, Waterhouse RM, Williams LJ, Besansky NJ. The evolution of the Anopheles 16 genomes project. G3 (Bethesda, Md.). 3: 1191-4. PMID 23708298 DOI: 10.1534/G3.113.006247 |
0.512 |
|
| 2013 |
Abrudan J, Ramalho-Ortigão M, O'Neil S, Stayback G, Wadsworth M, Bernard M, Shoue D, Emrich S, Lawyer P, Kamhawi S, Rowton ED, Lehane MJ, Bates PA, Valenzeula JG, Tomlinson C, et al. The characterization of the Phlebotomus papatasi transcriptome. Insect Molecular Biology. 22: 211-32. PMID 23398403 DOI: 10.1111/Imb.12015 |
0.743 |
|
| 2012 |
O'Neil ST, Emrich SJ. Haplotype and minimum-chimerism consensus determination using short sequence data. Bmc Genomics. 13: S4. PMID 22537299 DOI: 10.1186/1471-2164-13-S2-S4 |
0.735 |
|
| 2012 |
Megy K, Emrich SJ, Lawson D, Campbell D, Dialynas E, Hughes DS, Koscielny G, Louis C, Maccallum RM, Redmond SN, Sheehan A, Topalis P, Wilson D. VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics. Nucleic Acids Research. 40: D729-34. PMID 22135296 DOI: 10.1093/Nar/Gkr1089 |
0.459 |
|
| 2012 |
Moretti C, Thrasher A, Yu L, Olson M, Emrich S, Thain D. A framework for scalable genome assembly on clusters, clouds, and grids Ieee Transactions On Parallel and Distributed Systems. 23: 2189-2197. DOI: 10.1109/Tpds.2012.80 |
0.42 |
|
| 2012 |
Thrasher A, Thain D, Emrich S, Musgrave Z. Shifting the bioinformatics computing paradigm: A case study in parallelizing genome annotation using MAKER and Work Queue 2012 Ieee 2nd International Conference On Computational Advances in Bio and Medical Sciences, Iccabs 2012. DOI: 10.1109/ICCABS.2012.6182647 |
0.301 |
|
| 2011 |
Samarakoon U, Regier A, Tan A, Desany BA, Collins B, Tan JC, Emrich SJ, Ferdig MT. High-throughput 454 resequencing for allele discovery and recombination mapping in Plasmodium falciparum. Bmc Genomics. 12: 116. PMID 21324207 DOI: 10.1186/1471-2164-12-116 |
0.769 |
|
| 2010 |
Lobo NF, Sangaré DM, Regier AA, Reidenbach KR, Bretz DA, Sharakhova MV, Emrich SJ, Traore SF, Costantini C, Besansky NJ, Collins FH. Breakpoint structure of the Anopheles gambiae 2Rb chromosomal inversion. Malaria Journal. 9: 293. PMID 20974007 DOI: 10.1186/1475-2875-9-293 |
0.762 |
|
| 2010 |
Lawniczak MK, Emrich SJ, Holloway AK, Regier AP, Olson M, White B, Redmond S, Fulton L, Appelbaum E, Godfrey J, Farmer C, Chinwalla A, Yang SP, Minx P, Nelson J, et al. Widespread divergence between incipient Anopheles gambiae species revealed by whole genome sequences. Science (New York, N.Y.). 330: 512-4. PMID 20966253 DOI: 10.1126/Science.1195755 |
0.496 |
|
| 2010 |
Rider AK, Siwo G, Chawla NV, Ferdig M, Emrich SJ. A statistical approach to finding overlooked genetic associations. Bmc Bioinformatics. 11: 526. PMID 20964847 DOI: 10.1186/1471-2105-11-526 |
0.403 |
|
| 2010 |
O'Neil ST, Dzurisin JD, Carmichael RD, Lobo NF, Emrich SJ, Hellmann JJ. Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon. Bmc Genomics. 11: 310. PMID 20478048 DOI: 10.1186/1471-2164-11-310 |
0.735 |
|
| 2010 |
Liu S, Chen HD, Makarevitch I, Shirmer R, Emrich SJ, Dietrich CR, Barbazuk WB, Springer NM, Schnable PS. High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing. Genetics. 184: 19-26. PMID 19884313 DOI: 10.1534/Genetics.109.107557 |
0.333 |
|
| 2009 |
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, ... ... Emrich SJ, et al. The B73 maize genome: complexity, diversity, and dynamics. Science (New York, N.Y.). 326: 1112-5. PMID 19965430 DOI: 10.1126/Science.1178534 |
0.735 |
|
| 2009 |
Regier A, Olson M, Emrich SJ. Alignment and analysis of closely related genomes Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5462: 343-352. DOI: 10.1007/978-3-642-00727-9_32 |
0.416 |
|
| 2007 |
Barbazuk WB, Emrich S, Schnable PS. SNP Mining from Maize 454 EST Sequences. Csh Protocols. 2007: pdb.prot4786. PMID 21357124 DOI: 10.1101/Pdb.Prot4786 |
0.409 |
|
| 2007 |
Ohtsu K, Smith MB, Emrich SJ, Borsuk LA, Zhou R, Chen T, Zhang X, Timmermans MC, Beck J, Buckner B, Janick-Buckner D, Nettleton D, Scanlon MJ, Schnable PS. Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.). The Plant Journal : For Cell and Molecular Biology. 52: 391-404. PMID 17764504 DOI: 10.1111/J.1365-313X.2007.03244.X |
0.359 |
|
| 2007 |
Barbazuk WB, Emrich SJ, Chen HD, Li L, Schnable PS. SNP discovery via 454 transcriptome sequencing. The Plant Journal : For Cell and Molecular Biology. 51: 910-8. PMID 17662031 DOI: 10.1111/J.1365-313X.2007.03193.X |
0.423 |
|
| 2007 |
Emrich SJ, Li L, Wen TJ, Yandeau-Nelson MD, Fu Y, Guo L, Chou HH, Aluru S, Ashlock DA, Schnable PS. Nearly identical paralogs: implications for maize (Zea mays L.) genome evolution. Genetics. 175: 429-39. PMID 17110490 DOI: 10.1534/Genetics.106.064006 |
0.735 |
|
| 2007 |
Emrich SJ, Barbazuk WB, Li L, Schnable PS. Gene discovery and annotation using LCM-454 transcriptome sequencing. Genome Research. 17: 69-73. PMID 17095711 DOI: 10.1101/Gr.5145806 |
0.481 |
|
| 2007 |
Kalyanaraman A, Emrich SJ, Schnable PS, Aluru S. Assembling genomes on large-scale parallel computers Journal of Parallel and Distributed Computing. 67: 1240-1255. DOI: 10.1016/J.Jpdc.2007.05.014 |
0.546 |
|
| 2005 |
Fu Y, Emrich SJ, Guo L, Wen TJ, Ashlock DA, Aluru S, Schnable PS. Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes. Proceedings of the National Academy of Sciences of the United States of America. 102: 12282-7. PMID 16103354 DOI: 10.1073/Pnas.0503394102 |
0.752 |
|
| 2005 |
Yao H, Guo L, Fu Y, Borsuk LA, Wen TJ, Skibbe DS, Cui X, Scheffler BE, Cao J, Emrich SJ, Ashlock DA, Schnable PS. Evaluation of five ab initio gene prediction programs for the discovery of maize genes. Plant Molecular Biology. 57: 445-60. PMID 15830133 DOI: 10.1007/S11103-005-0271-1 |
0.356 |
|
| 2004 |
Emrich SJ, Aluru S, Fu Y, Wen TJ, Narayanan M, Guo L, Ashlock DA, Schnable PS. A strategy for assembling the maize (Zea mays L.) genome. Bioinformatics (Oxford, England). 20: 140-7. PMID 14734303 DOI: 10.1093/Bioinformatics/Bth017 |
0.736 |
|
| 2003 |
Emrich SJ, Lowe M, Delcher AL. PROBEmer: A web-based software tool for selecting optimal DNA oligos. Nucleic Acids Research. 31: 3746-50. PMID 12824409 DOI: 10.1093/Nar/Gkg569 |
0.326 |
|
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