Akilesh Pandey - Publications

Affiliations: 
Biological Chemistry Johns Hopkins University, Baltimore, MD 
Area:
Biochemistry

88 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Na CH, Sathe G, Rosenthal LS, Moghekar AR, Dawson VL, Dawson TM, Pandey A. Development of a novel method for the quantification of tyrosine 39 phosphorylated α- and β-synuclein in human cerebrospinal fluid. Clinical Proteomics. 17: 13. PMID 32390785 DOI: 10.1186/s12014-020-09277-8  0.44
2019 Madugundu AK, Na CH, Nirujogi RS, Renuse S, Kim KP, Burns KH, Wilks C, Langmead B, Ellis SE, Collado-Torres L, Halushka MK, Kim MS, Pandey A. Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial cells. Proteomics. e1800315. PMID 30983154 DOI: 10.1002/pmic.201800315  0.8
2019 Na CH, Sharma N, Madugundu AK, Chen R, Atalar Aksit M, Rosson GD, Cutting GR, Pandey A. Integrated transcriptomic and proteomic analysis of human eccrine sweat glands identifies missing and novel proteins. Molecular & Cellular Proteomics : McP. PMID 30979791 DOI: 10.1074/mcp.RA118.001101  0.44
2018 Sathe G, Na CH, Renuse S, Madugundu AK, Albert M, Moghekar A, Pandey A. Quantitative proteomic profiling of cerebrospinal fluid to identify candidate biomarkers for Alzheimer's disease. Proteomics. Clinical Applications. e1800105. PMID 30578620 DOI: 10.1002/prca.201800105  0.44
2018 Wu X, Zahari MS, Renuse S, Sahasrabuddhe NA, Chaerkady R, Kim MS, Fackler MJ, Stampfer M, Gabrielson E, Sukumar S, Pandey A. Correction to: Quantitative phosphoproteomic analysis reveals reciprocal activation of receptor tyrosine kinases between cancer epithelial cells and stromal fibroblasts. Clinical Proteomics. 15: 37. PMID 30479584 DOI: 10.1186/s12014-018-9210-4  0.8
2018 Sathe G, Na CH, Renuse S, Madugundu A, Albert M, Moghekar A, Pandey A. Phosphotyrosine profiling of human cerebrospinal fluid. Clinical Proteomics. 15: 29. PMID 30220890 DOI: 10.1186/s12014-018-9205-1  0.44
2018 Wu X, Zahari MS, Renuse S, Sahasrabuddhe NA, Chaerkady R, Kim MS, Fackler MJ, Stampfer M, Gabrielson E, Sukumar S, Pandey A. Quantitative phosphoproteomic analysis reveals reciprocal activation of receptor tyrosine kinases between cancer epithelial cells and stromal fibroblasts. Clinical Proteomics. 15: 21. PMID 29946230 DOI: 10.1186/s12014-018-9197-x  0.8
2018 Heo S, Diering GH, Na CH, Nirujogi RS, Bachman JL, Pandey A, Huganir RL. Identification of long-lived synaptic proteins by proteomic analysis of synaptosome protein turnover. Proceedings of the National Academy of Sciences of the United States of America. PMID 29610302 DOI: 10.1073/pnas.1720956115  0.44
2018 Lee SE, Song J, Bösl K, Müller AC, Vitko D, Bennett KL, Superti-Furga G, Pandey A, Kandasamy RK, Kim MS. Proteogenomic Analysis to Identify Missing Proteins from Haploid Cell Lines. Proteomics. PMID 29474001 DOI: 10.1002/pmic.201700386  0.8
2018 Kim S, Yun SP, Lee S, Umanah GE, Bandaru VVR, Yin X, Rhee P, Karuppagounder SS, Kwon SH, Lee H, Mao X, Kim D, Pandey A, Lee G, Dawson VL, et al. GBA1 deficiency negatively affects physiological α-synuclein tetramers and related multimers. Proceedings of the National Academy of Sciences of the United States of America. PMID 29311330 DOI: 10.1073/pnas.1700465115  0.4
2017 Kim DI, Cutler JA, Na CH, Reckel S, Renuse S, Madugundu AK, Tahir R, Goldschmidt HL, Reddy KL, Huganir RL, Wu X, Zachara NE, Hantschel O, Pandey A. BioSITe - a method for direct detection and quantitation of site-specific biotinylation. Journal of Proteome Research. PMID 29249144 DOI: 10.1021/acs.jproteome.7b00775  0.44
2017 Na CH, Barbhuiya M, Kim MS, Verbruggen S, Eacker S, Pletnikova O, Troncoso J, Halushka M, Menschaert G, Overall C, Pandey A. Discovery of non-canonical translation initiation sites through mass spectrometric analysis of protein N-termini. Genome Research. PMID 29162641 DOI: 10.1101/gr.226050.117  0.8
2017 McCall MN, Kim MS, Adil M, Patil AH, Lu Y, Mitchell CJ, Leal-Rojas P, Xu J, Kumar M, Dawson VL, Dawson TM, Baras AS, Rosenberg AZ, Arking DE, Burns KH, ... Pandey A, et al. Toward the human cellular microRNAome. Genome Research. PMID 28877962 DOI: 10.1101/gr.222067.117  0.8
2017 Na CH, Pandey A. Mass Spectrometry Reveals Respiratory Viral Infection Biomarkers. Ebiomedicine. PMID 28412248 DOI: 10.1016/j.ebiom.2017.04.007  0.44
2017 Bettridge J, Na CH, Pandey A, Desiderio S. H3K4me3 induces allosteric conformational changes in the DNA-binding and catalytic regions of the V(D)J recombinase. Proceedings of the National Academy of Sciences of the United States of America. PMID 28174273 DOI: 10.1073/pnas.1615727114  0.44
2016 Prasad TS, Mohanty AK, Kumar M, Sreenivasamurthy SK, Dey G, Nirujogi RS, Pinto SM, Madugundu AK, Patil AH, Advani J, Manda SS, Gupta MK, Dwivedi SB, Kelkar DS, Hall B, ... ... Pandey A, et al. Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes. Genome Research. PMID 28003436 DOI: 10.1101/gr.201368.115  0.44
2016 Sharma N, LaRusch J, Sosnay P, Gottschalk LB, Lopez A, Pellicore MJ, Evans T, Davis E, Atalar M, Na CH, Rosson GD, Belchis D, Milewski M, Pandey A, Cutting GR. A sequence upstream of canonical PDZ binding motif within CFTR C-terminus enhances NHERF1 interaction. American Journal of Physiology. Lung Cellular and Molecular Physiology. ajplung.00363.2016. PMID 27793802 DOI: 10.1152/ajplung.00363.2016  0.44
2016 Cha SJ, Kim MS, Pandey A, Jacobs-Lorena M. Identification of GAPDH on the surface of Plasmodium sporozoites as a new candidate for targeting malaria liver invasion. The Journal of Experimental Medicine. PMID 27551151 DOI: 10.1084/jem.20160059  0.8
2015 Zahari MS, Wu X, Pinto SM, Nirujogi RS, Kim MS, Fetics B, Philip M, Barnes SR, Godfrey B, Gabrielson E, Nevo E, Pandey A. Phosphoproteomic profiling of tumor tissues identifies HSP27 Ser82 phosphorylation as a robust marker of early ischemia. Scientific Reports. 5: 13660. PMID 26329039 DOI: 10.1038/srep13660  0.8
2012 Kim MS, Kuppireddy SV, Sakamuri S, Singal M, Getnet D, Harsha HC, Goel R, Balakrishnan L, Jacob HK, Kashyap MK, Tankala SG, Maitra A, Iacobuzio-Donahue CA, Jaffee E, Goggins MG, ... ... Pandey A, et al. Rapid characterization of candidate biomarkers for pancreatic cancer using cell microarrays (CMAs). Journal of Proteome Research. 11: 5556-63. PMID 22985314 DOI: 10.1021/pr300483r  0.8
2012 van Bodegom D, Zhong J, Kopp N, Dutta C, Kim MS, Bird L, Weigert O, Tyner J, Pandey A, Yoda A, Weinstock DM. Differences in signaling through the B-cell leukemia oncoprotein CRLF2 in response to TSLP and through mutant JAK2. Blood. 120: 2853-63. PMID 22915648 DOI: 10.1182/blood-2012-02-413252  0.8
2012 Renuse S, Harsha HC, Kumar P, Acharya PK, Sharma J, Goel R, Kumar GS, Raju R, Prasad TS, Slotta T, Pandey A. Proteomic analysis of an unsequenced plant--Mangifera indica. Journal of Proteomics. 75: 5793-6. PMID 22906602 DOI: 10.1016/j.jprot.2012.08.003  0.56
2012 Do Vale LH, Gómez-Mendoza DP, Kim MS, Pandey A, Ricart CA, Ximenes F Filho E, Sousa MV. Secretome analysis of the fungus Trichoderma harzianum grown on cellulose. Proteomics. 12: 2716-28. PMID 22745025 DOI: 10.1002/pmic.201200063  0.8
2012 Radhakrishnan A, Raju R, Tuladhar N, Subbannayya T, Thomas JK, Goel R, Telikicherla D, Palapetta SM, Rahiman BA, Venkatesh DD, Urmila KK, Harsha HC, Mathur PP, Prasad TS, Pandey A, et al. A pathway map of prolactin signaling. Journal of Cell Communication and Signaling. 6: 169-73. PMID 22684822 DOI: 10.1007/s12079-012-0168-0  0.56
2012 Ferrando IM, Chaerkady R, Zhong J, Molina H, Jacob HK, Herbst-Robinson K, Dancy BM, Katju V, Bose R, Zhang J, Pandey A, Cole PA. Identification of targets of c-Src tyrosine kinase by chemical complementation and phosphoproteomics. Molecular & Cellular Proteomics : McP. 11: 355-69. PMID 22499769 DOI: 10.1074/mcp.M111.015750  0.56
2012 Zhong J, Kim MS, Chaerkady R, Wu X, Huang TC, Getnet D, Mitchell CJ, Palapetta SM, Sharma J, O'Meally RN, Cole RN, Yoda A, Moritz A, Loriaux MM, Rush J, ... ... Pandey A, et al. TSLP signaling network revealed by SILAC-based phosphoproteomics. Molecular & Cellular Proteomics : McP. 11: M112.017764. PMID 22345495 DOI: 10.1074/mcp.M112.017764  0.56
2012 Huang TC, Sahasrabuddhe NA, Kim MS, Getnet D, Yang Y, Peterson JM, Ghosh B, Chaerkady R, Leach SD, Marchionni L, Wong GW, Pandey A. Regulation of lipid metabolism by Dicer revealed through SILAC mice. Journal of Proteome Research. 11: 2193-205. PMID 22313051 DOI: 10.1021/pr2009884  0.56
2012 Kim MS, Pandey A. Electron transfer dissociation mass spectrometry in proteomics. Proteomics. 12: 530-42. PMID 22246976 DOI: 10.1002/pmic.201100517  0.8
2012 Polisetty RV, Gautam P, Sharma R, Harsha HC, Nair SC, Gupta MK, Uppin MS, Challa S, Puligopu AK, Ankathi P, Purohit AK, Chandak GR, Pandey A, Sirdeshmukh R. LC-MS/MS analysis of differentially expressed glioblastoma membrane proteome reveals altered calcium signaling and other protein groups of regulatory functions. Molecular & Cellular Proteomics : McP. 11: M111.013565. PMID 22219345 DOI: 10.1074/mcp.M111.013565  0.56
2012 Kinsinger CR, Apffel J, Baker M, Bian X, Borchers CH, Bradshaw R, Brusniak MY, Chan DW, Deutsch EW, Domon B, Gorman J, Grimm R, Hancock W, Hermjakob H, Horn D, ... ... Pandey A, et al. Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles). Proteomics. 12: 11-20. PMID 22069307 DOI: 10.1002/pmic.201100562  0.56
2012 Agyeman AS, Chaerkady R, Shaw PG, Davidson NE, Visvanathan K, Pandey A, Kensler TW. Transcriptomic and proteomic profiling of KEAP1 disrupted and sulforaphane-treated human breast epithelial cells reveals common expression profiles. Breast Cancer Research and Treatment. 132: 175-87. PMID 21597922 DOI: 10.1007/s10549-011-1536-9  0.56
2012 Demir E, Cary MP, Paley S, Fukuda K, Lemer C, Vastrik I, Wu G, D'Eustachio P, Schaefer C, Luciano J, Schacherer F, Martinez-Flores I, Hu Z, Jimenez-Jacinto V, Joshi-Tope G, ... ... Pandey A, et al. The BioPAX community standard for pathway data sharing (Nature Biotechnology (2010) 28, (935-942)) Nature Biotechnology. 30: 365. DOI: 10.1038/nbt0412-365c  0.56
2011 Kinsinger CR, Apffel J, Baker M, Bian X, Borchers CH, Bradshaw R, Brusniak MY, Chan DW, Deutsch EW, Domon B, Gorman J, Grimm R, Hancock W, Hermjakob H, Horn D, ... ... Pandey A, et al. Recommendations for mass spectrometry data quality metrics for open access data (corollary to the Amsterdam principles). Proteomics. Clinical Applications. 5: 580-9. PMID 22213554 DOI: 10.1002/prca.201100097  0.56
2011 Barbhuiya MA, Sahasrabuddhe NA, Pinto SM, Muthusamy B, Singh TD, Nanjappa V, Keerthikumar S, Delanghe B, Harsha HC, Chaerkady R, Jalaj V, Gupta S, Shrivastav BR, Tiwari PK, Pandey A. Comprehensive proteomic analysis of human bile. Proteomics. 11: 4443-53. PMID 22114102 DOI: 10.1002/pmic.201100197  0.56
2011 Telikicherla D, Ambekar A, Palapetta SM, Dwivedi SB, Raju R, Sharma J, Prasad TsK, Ramachandra Y, Mohan SS, Maharudraiah J, Mukherjee S, Pandey A. A comprehensive curated resource for follicle stimulating hormone signaling. Bmc Research Notes. 4: 408. PMID 21996254 DOI: 10.1186/1756-0500-4-408  0.56
2011 Raju R, Nanjappa V, Balakrishnan L, Radhakrishnan A, Thomas JK, Sharma J, Tian M, Palapetta SM, Subbannayya T, Sekhar NR, Muthusamy B, Goel R, Subbannayya Y, Telikicherla D, Bhattacharjee M, ... ... Pandey A, et al. NetSlim: high-confidence curated signaling maps. Database : the Journal of Biological Databases and Curation. 2011: bar032. PMID 21959865 DOI: 10.1093/database/bar032  0.56
2011 Chaerkady R, Kelkar DS, Muthusamy B, Kandasamy K, Dwivedi SB, Sahasrabuddhe NA, Kim MS, Renuse S, Pinto SM, Sharma R, Pawar H, Sekhar NR, Mohanty AK, Getnet D, Yang Y, ... ... Pandey A, et al. A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry. Genome Research. 21: 1872-81. PMID 21795387 DOI: 10.1101/gr.127951.111  0.56
2011 Chaerkady R, Letzen B, Renuse S, Sahasrabuddhe NA, Kumar P, All AH, Thakor NV, Delanghe B, Gearhart JD, Pandey A, Kerr CL. Quantitative temporal proteomic analysis of human embryonic stem cell differentiation into oligodendrocyte progenitor cells. Proteomics. 11: 4007-20. PMID 21770034 DOI: 10.1002/pmic.201100107  0.56
2011 Raju R, Balakrishnan L, Nanjappa V, Bhattacharjee M, Getnet D, Muthusamy B, Kurian Thomas J, Sharma J, Rahiman BA, Harsha HC, Shankar S, Prasad TS, Mohan SS, Bader GD, Wani MR, ... Pandey A, et al. A comprehensive manually curated reaction map of RANKL/RANK-signaling pathway. Database : the Journal of Biological Databases and Curation. 2011: bar021. PMID 21742767 DOI: 10.1093/database/bar021  0.56
2011 Amanchy R, Kandasamy K, Mathivanan S, Periaswamy B, Reddy R, Yoon WH, Joore J, Beer MA, Cope L, Pandey A. Identification of Novel Phosphorylation Motifs Through an Integrative Computational and Experimental Analysis of the Human Phosphoproteome. Journal of Proteomics & Bioinformatics. 4: 22-35. PMID 21720494 DOI: 10.4172/jpb.1000163  0.56
2011 Hyland EM, Molina H, Poorey K, Jie C, Xie Z, Dai J, Qian J, Bekiranov S, Auble DT, Pandey A, Boeke JD. An evolutionarily 'young' lysine residue in histone H3 attenuates transcriptional output in Saccharomyces cerevisiae. Genes & Development. 25: 1306-19. PMID 21685365 DOI: 10.1101/gad.2050311  0.56
2011 Shao H, Chaerkady R, Chen S, Pinto SM, Sharma R, Delanghe B, Birk DE, Pandey A, Chakravarti S. Proteome profiling of wild type and lumican-deficient mouse corneas. Journal of Proteomics. 74: 1895-905. PMID 21616181 DOI: 10.1016/j.jprot.2011.04.032  0.56
2011 Wang Q, Chaerkady R, Wu J, Hwang HJ, Papadopoulos N, Kopelovich L, Maitra A, Matthaei H, Eshleman JR, Hruban RH, Kinzler KW, Pandey A, Vogelstein B. Mutant proteins as cancer-specific biomarkers Proceedings of the National Academy of Sciences of the United States of America. 108: 2444-2449. PMID 21248225 DOI: 10.1073/pnas.1019203108  0.56
2010 Chen H, Pimienta G, Gu Y, Sun X, Hu J, Kim MS, Chaerkady R, Gucek M, Cole RN, Sukumar S, Pandey A. Proteomic characterization of Her2/neu-overexpressing breast cancer cells. Proteomics. 10: 3800-10. PMID 20960451 DOI: 10.1002/pmic.201000297  0.8
2010 Demir E, Cary MP, Paley S, Fukuda K, Lemer C, Vastrik I, Wu G, D'Eustachio P, Schaefer C, Luciano J, Schacherer F, Martinez-Flores I, Hu Z, Jimenez-Jacinto V, Joshi-Tope G, ... ... Pandey A, et al. The BioPAX community standard for pathway data sharing. Nature Biotechnology. 28: 935-42. PMID 20829833 DOI: 10.1038/nbt.1666  0.56
2010 Hector A, Montgomery EA, Karikari C, Canto M, Dunbar KB, Wang JS, Feldmann G, Hong SM, Haffner MC, Meeker AK, Holland SJ, Yu J, Heckrodt TJ, Zhang J, Ding P, ... ... Pandey A, et al. The Axl receptor tyrosine kinase is an adverse prognostic factor and a therapeutic target in esophageal adenocarcinoma. Cancer Biology & Therapy. 10: 1009-18. PMID 20818175 DOI: 10.4161/cbt.10.10.13248  0.56
2010 Zhong J, Krawczyk SA, Chaerkady R, Huang H, Goel R, Bader JS, Wong GW, Corkey BE, Pandey A. Temporal profiling of the secretome during adipogenesis in humans. Journal of Proteome Research. 9: 5228-38. PMID 20707391 DOI: 10.1021/pr100521c  0.56
2010 Kashyap MK, Harsha HC, Renuse S, Pawar H, Sahasrabuddhe NA, Kim MS, Marimuthu A, Keerthikumar S, Muthusamy B, Kandasamy K, Subbannayya Y, Prasad TS, Mahmood R, Chaerkady R, Meltzer SJ, ... ... Pandey A, et al. SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome. Cancer Biology & Therapy. 10: 796-810. PMID 20686364 DOI: 10.4161/cbt.10.8.12914  0.8
2009 Venugopal A, Chaerkady R, Pandey A. Application of mass spectrometry-based proteomics for biomarker discovery in neurological disorders. Annals of Indian Academy of Neurology. 12: 3-11. PMID 20151002 DOI: 10.4103/0972-2327.48845  0.56
2009 Cooper EM, Cutcliffe C, Kristiansen TZ, Pandey A, Pickart CM, Cohen RE. K63-specific deubiquitination by two JAMM/MPN+ complexes: BRISC-associated Brcc36 and proteasomal Poh1. The Embo Journal. 28: 621-31. PMID 19214193 DOI: 10.1038/emboj.2009.27  0.56
2009 Ghosh AK, Devenport M, Jethwaney D, Kalume DE, Pandey A, Anderson VE, Sultan AA, Kumar N, Jacobs-Lorena M. Malaria parasite invasion of the mosquito salivary gland requires interaction between the Plasmodium TRAP and the Anopheles saglin proteins Plos Pathogens. 5. PMID 19148273 DOI: 10.1371/journal.ppat.1000265  0.56
2008 Chaerkady R, Thuluvath PJ, Kim MS, Nalli A, Vivekanandan P, Simmers J, Torbenson M, Pandey A. O Labeling for a Quantitative Proteomic Analysis of Glycoproteins in Hepatocellular Carcinoma. Clinical Proteomics. 4: 137-155. PMID 20357908 DOI: 10.1007/s12014-008-9013-0  0.56
2008 Dixon SJ, Fedyshyn Y, Koh JL, Prasad TS, Chahwan C, Chua G, Toufighi K, Baryshnikova A, Hayles J, Hoe KL, Kim DU, Park HO, Myers CL, Pandey A, Durocher D, et al. Significant conservation of synthetic lethal genetic interaction networks between distantly related eukaryotes. Proceedings of the National Academy of Sciences of the United States of America. 105: 16653-8. PMID 18931302 DOI: 10.1073/pnas.0806261105  0.56
2008 Harsha HC, Jimeno A, Molina H, Mlhalas AB, Goggins MG, Hruban RH, Schulick RD, Kamath U, Maitra A, Hidalgo M, Pandey A. Activated epidermal growth factor receptor as a novel target in pancreatic cancer therapy Journal of Proteome Research. 7: 4651-4658. PMID 18821783 DOI: 10.1021/pr800139r  0.56
2008 Zhong L, Roybal J, Chaerkady R, Zhang W, Choi K, Alvarez CA, Tran H, Creighton CJ, Yan S, Strieter RM, Pandey A, Kurie JM. Identification of secreted proteins that mediate cell-cell interactions in an in vitro model of the lung cancer microenvironment Cancer Research. 68: 7237-7245. PMID 18757440 DOI: 10.1158/0008-5472.CAN-08-1529  0.56
2008 Chaerkady R, Harsha HC, Nalli A, Gucek M, Vivekanandan P, Akhtar J, Cole RN, Simmers J, Schulick RD, Singh S, Torbenson M, Pandey A, Thuluvath PJ. A quantitative proteomic approach for identification of potential biomarkers in hepatocellular carcinoma. Journal of Proteome Research. 7: 4289-98. PMID 18715028 DOI: 10.1021/pr800197z  0.56
2008 Luo W, Slebos RJ, Hill S, Li M, Brábek J, Amanchy R, Chaerkady R, Pandey A, Ham AJ, Hanks SK. Global impact of oncogenic Src on a phosphotyrosine proteome. Journal of Proteome Research. 7: 3447-60. PMID 18563927 DOI: 10.1021/pr800187n  0.56
2007 Lucito R, Suresh S, Walter K, Pandey A, Lakshmi B, Krasnitz A, Sebat J, Wigler M, Klein AP, Brune K, Palmisano E, Maitra A, Goggins M, Hruban RH. Copy-number variants in patients with a strong family history of pancreatic cancer. Cancer Biology & Therapy. 6: 1592-9. PMID 17912030 DOI: 10.4161/cbt.6.10.4725  0.56
2007 Bhandari R, Saiardi A, Ahmadibeni Y, Snowman AM, Resnick AC, Kristiansen TZ, Molina H, Pandey A, Werner JK, Juluri KR, Xu Y, Prestwich GD, Parang K, Snyder SH. Protein pyrophosphorylation by inositol pyrophosphates is a posttranslational event. Proceedings of the National Academy of Sciences of the United States of America. 104: 15305-10. PMID 17873058 DOI: 10.1073/pnas.0707338104  0.56
2007 Dinglasan RR, Kalume DE, Kanzok SM, Ghosh AK, Muratova O, Pandey A, Jacobs-Lorena M. Disruption of Plasmodium falciparum development by antibodies against a conserved mosquito midgut antigen Proceedings of the National Academy of Sciences of the United States of America. 104: 13461-13466. PMID 17673553 DOI: 10.1073/pnas.0702239104  0.56
2007 Wang Z, Pandey A, Hart GW. Dynamic interplay between O-linked N-acetylglucosaminylation and glycogen synthase kinase-3-dependent phosphorylation. Molecular & Cellular Proteomics : McP. 6: 1365-79. PMID 17507370 DOI: 10.1074/mcp.M600453-MCP200  0.56
2007 Molina H, Horn DM, Tang N, Mathivanan S, Pandey A. Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America. 104: 2199-204. PMID 17287340 DOI: 10.1073/pnas.0611217104  0.56
2007 Kim JW, Monila H, Pandey A, Lane MD. Upstream stimulatory factors regulate the C/EBP alpha gene during differentiation of 3T3-L1 preadipocytes. Biochemical and Biophysical Research Communications. 354: 517-21. PMID 17239350 DOI: 10.1016/j.bbrc.2007.01.008  0.56
2006 Liu B, Molina H, Kalume D, Pandey A, Griffith JD, Englund PT. Role of p38 in replication of Trypanosoma brucei kinetoplast DNA. Molecular and Cellular Biology. 26: 5382-93. PMID 16809774 DOI: 10.1128/MCB.00369-06  0.56
2006 Bose R, Molina H, Patterson AS, Bitok JK, Periaswamy B, Bader JS, Pandey A, Cole PA. Phosphoproteomic analysis of Her2/neu signaling and inhibition. Proceedings of the National Academy of Sciences of the United States of America. 103: 9773-8. PMID 16785428 DOI: 10.1073/pnas.0603948103  0.56
2006 Lerin C, Rodgers JT, Kalume DE, Kim SH, Pandey A, Puigserver P. GCN5 acetyltransferase complex controls glucose metabolism through transcriptional repression of PGC-1alpha. Cell Metabolism. 3: 429-38. PMID 16753578 DOI: 10.1016/j.cmet.2006.04.013  0.56
2006 Moff SL, Clark DP, Maitra A, Pandey A, Thuluvath PJ. Utility of bile duct brushings for the early detection of cholangiocarcinoma in patients with primary sclerosing cholangitis. Journal of Clinical Gastroenterology. 40: 336-41. PMID 16633106 DOI: 10.1097/01.mcg.0000210102.82241.de  0.56
2006 Gandhi TK, Zhong J, Mathivanan S, Karthick L, Chandrika KN, Mohan SS, Sharma S, Pinkert S, Nagaraju S, Periaswamy B, Mishra G, Nandakumar K, Shen B, Deshpande N, Nayak R, ... ... Pandey A, et al. Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets. Nature Genetics. 38: 285-93. PMID 16501559 DOI: 10.1038/ng1747  0.56
2006 Mishra GR, Suresh M, Kumaran K, Kannabiran N, Suresh S, Bala P, Shivakumar K, Anuradha N, Reddy R, Raghavan TM, Menon S, Hanumanthu G, Gupta M, Upendran S, Gupta S, ... ... Pandey A, et al. Human protein reference database--2006 update. Nucleic Acids Research. 34: D411-4. PMID 16381900 DOI: 10.1093/nar/gkj141  0.56
2005 Gandhi TK, Chandran S, Peri S, Saravana R, Amanchy R, Prasad TS, Pandey A. A bioinformatics analysis of protein tyrosine phosphatases in humans. Dna Research : An International Journal For Rapid Publication of Reports On Genes and Genomes. 12: 79-89. PMID 16303740 DOI: 10.1093/dnares/12.2.79  0.56
2005 Kalume DE, Peri S, Reddy R, Zhong J, Okulate M, Kumar N, Pandey A. Genome annotation of Anopheles gambiae using mass spectrometry-derived data. Bmc Genomics. 6: 128. PMID 16171517 DOI: 10.1186/1471-2164-6-128  0.56
2005 Ping P, Vondriska TM, Creighton CJ, Gandhi TK, Yang Z, Menon R, Kwon MS, Cho SY, Drwal G, Kellmann M, Peri S, Suresh S, Gronborg M, Molina H, Chaerkady R, ... ... Pandey A, et al. A functional annotation of subproteomes in human plasma. Proteomics. 5: 3506-19. PMID 16104058 DOI: 10.1002/pmic.200500140  0.56
2005 Omenn GS, States DJ, Adamski M, Blackwell TW, Menon R, Hermjakob H, Apweiler R, Haab BB, Simpson RJ, Eddes JS, Kapp EA, Moritz RL, Chan DW, Rai AJ, Admon A, ... ... Pandey A, et al. Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics. 5: 3226-45. PMID 16104056 DOI: 10.1002/pmic.200500358  0.56
2005 Muthusamy B, Hanumanthu G, Suresh S, Rekha B, Srinivas D, Karthick L, Vrushabendra BM, Sharma S, Mishra G, Chatterjee P, Mangala KS, Shivashankar HN, Chandrika KN, Deshpande N, Suresh M, ... ... Pandey A, et al. Plasma Proteome Database as a resource for proteomics research. Proteomics. 5: 3531-6. PMID 16041672 DOI: 10.1002/pmic.200401335  0.56
2005 Tang QQ, Grønborg M, Huang H, Kim JW, Otto TC, Pandey A, Lane MD. Sequential phosphorylation of CCAAT enhancer-binding protein beta by MAPK and glycogen synthase kinase 3beta is required for adipogenesis. Proceedings of the National Academy of Sciences of the United States of America. 102: 9766-71. PMID 15985551 DOI: 10.1073/pnas.0503891102  0.56
2005 Harsha HC, Suresh S, Amanchy R, Deshpande N, Shanker K, Yatish AJ, Muthusamy B, Vrushabendra BM, Rashmi BP, Chandrika KN, Padma N, Sharma S, Badano JL, Ramya MA, Shivashankar HN, ... ... Pandey A, et al. A manually curated functional annotation of the human X chromosome. Nature Genetics. 37: 331-2. PMID 15800640 DOI: 10.1038/ng0405-331  0.56
2004 Hustinx SR, Cao D, Maitra A, Sato N, Martin ST, Sudhir D, Iacobuzio-Donahue C, Cameron JL, Yeo CJ, Kern SE, Goggins M, Mollenhauer J, Pandey A, Hruban RH. Differentially expressed genes in pancreatic ductal adenocarcinomas identified through serial analysis of gene expression. Cancer Biology & Therapy. 3: 1254-61. PMID 15477757 DOI: 10.4161/cbt.3.12.1238  0.56
2004 Al-Shami A, Spolski R, Kelly J, Fry T, Schwartzberg PL, Pandey A, Mackall CL, Leonard WJ. A role for thymic stromal lymphopoietin in CD4(+) T cell development. The Journal of Experimental Medicine. 200: 159-68. PMID 15263024 DOI: 10.1084/jem.20031975  0.56
2004 Navarro JD, Talreja N, Peri S, Vrushabendra BM, Rashmi BP, Padma N, Surendranath V, Jonnalagadda CK, Kousthub PS, Deshpande N, Shanker K, Pandey A. BioBuilder as a database development and functional annotation platform for proteins. Bmc Bioinformatics. 5: 43. PMID 15099404 DOI: 10.1186/1471-2105-5-43  0.56
2004 Tewari M, Hu PJ, Ahn JS, Ayivi-Guedehoussou N, Vidalain PO, Li S, Milstein S, Armstrong CM, Boxem M, Butler MD, Busiguina S, Rual JF, Ibarrola N, Chaklos ST, Bertin N, ... ... Pandey A, et al. Systematic interactome mapping and genetic perturbation analysis of a C. elegans TGF-beta signaling network. Molecular Cell. 13: 469-82. PMID 14992718 DOI: 10.1016/S1097-2765(04)00033-4  0.56
2004 Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, ... ... Pandey A, et al. Human protein reference database as a discovery resource for proteomics. Nucleic Acids Research. 32: D497-501. PMID 14681466 DOI: 10.1093/nar/gkh070  0.56
2003 Navarro JD, Niranjan V, Peri S, Jonnalagadda CK, Pandey A. From biological databases to platforms for biomedical discovery. Trends in Biotechnology. 21: 263-8. PMID 12788546 DOI: 10.1016/S0167-7799(03)00108-2  0.56
2002 Jebanathirajah JA, Peri S, Pandey A. Toll and interleukin-1 receptor (TIR) domain-containing proteins in plants: a genomic perspective. Trends in Plant Science. 7: 388-91. PMID 12234729 DOI: 10.1016/S1360-1385(02)02309-9  0.56
2002 Dan I, Watanabe NM, Kajikawa E, Ishida T, Pandey A, Kusumi A. Overlapping of MINK and CHRNE gene loci in the course of mammalian evolution. Nucleic Acids Research. 30: 2906-10. PMID 12087176 DOI: 10.1093/nar/gkf407  0.56
2002 Deshpande N, Pandey A. Mining gene expression data for functional annotation of genomes Trends in Biotechnology. 20: 282.  0.56
2001 Pandey A. Common standards for genomics and proteomics Trends in Genetics. 17: 442. PMID 11485810  0.56
1999 Pandey A, Lewitter F. Nucleotide sequence databases: A gold mine for biologists Trends in Biochemical Sciences. 24: 276-280. PMID 10390617 DOI: 10.1016/S0968-0004(99)01400-0  0.56
1995 Angrist M, Wells DE, Chakravarti A, Pandey A. Chromosomal localization of the mouse Src-like adapter protein (Slap) gene and its putative human homolog SLA. Genomics. 30: 623-5. PMID 8825655 DOI: 10.1006/geno.1995.1289  0.56
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