Gerd Pfeifer - Publications

Graduate School of Biological Sciences City of Hope's Irell & Manella Graduate School of Biomedical Sciences 
Genetics, Biochemistry

44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Hahn MA, Jin SG, Li AX, Liu J, Huang Z, Wu X, Kim BW, Johnson J, Bilbao AV, Tao S, Yim JA, Fong Y, Goebbels S, Schwab MH, Lu Q, ... Pfeifer GP, et al. Reprogramming of DNA methylation at NEUROD2-bound sequences during cortical neuron differentiation. Science Advances. 5: eaax0080. PMID 31681843 DOI: 10.1126/sciadv.aax0080  0.44
2017 Weng YL, An R, Cassin J, Joseph J, Mi R, Wang C, Zhong C, Jin SG, Pfeifer GP, Bellacosa A, Dong X, Hoke A, He Z, Song H, Ming GL. An Intrinsic Epigenetic Barrier for Functional Axon Regeneration. Neuron. 94: 337-346.e6. PMID 28426967 DOI: 10.1016/j.neuron.2017.03.034  0.44
2016 Song J, Pfeifer GP. Are there specific readers of oxidized 5-methylcytosine bases? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. PMID 27480808 DOI: 10.1002/bies.201600126  0.32
2016 Iqbal K, Tran DA, Li AX, Warden C, Bai AY, Singh P, Madaj ZB, Winn ME, Wu X, Pfeifer GP, Szabó PE. High type I error and misrepresentations in search for transgenerational epigenetic inheritance: response to Guerrero-Bosagna. Genome Biology. 17: 154. PMID 27411809 DOI: 10.1186/s13059-016-0981-5  0.32
2016 Pfeifer GP. Epigenetics: An elusive DNA base in mammals. Nature. PMID 27027294 DOI: 10.1038/nature17315  0.32
2016 Zhang X, Guo C, Wu X, Li AX, Liu L, Tsark W, Dammann R, Shen H, Vonderfecht SL, Pfeifer GP. Analysis of liver tumor-prone mouse models of the Hippo kinase scaffold proteins Rassf1a and Sav1. Cancer Research. PMID 26980762 DOI: 10.1158/0008-5472.CAN-15-3010  0.32
2016 Pfeifer GP. Properly dividing with YAP. Science Signaling. 9: fs3. PMID 26933061 DOI: 10.1126/scisignal.aaf2527  0.32
2016 Jin SG, Zhang ZM, Dunwell TL, Harter MR, Wu X, Johnson J, Li Z, Liu J, Szabó PE, Lu Q, Xu GL, Song J, Pfeifer GP. Tet3 Reads 5-Carboxylcytosine through Its CXXC Domain and Is a Potential Guardian against Neurodegeneration. Cell Reports. PMID 26774490 DOI: 10.1016/j.celrep.2015.12.044  0.32
2015 Jin SG, Xiong W, Wu X, Yang L, Pfeifer GP. The DNA methylation landscape of human melanoma. Genomics. PMID 26384656 DOI: 10.1016/j.ygeno.2015.09.004  0.32
2015 Jung M, Jin SG, Zhang X, Xiong W, Gogoshin G, Rodin AS, Pfeifer GP. Longitudinal epigenetic and gene expression profiles analyzed by three-component analysis reveal down-regulation of genes involved in protein translation in human aging. Nucleic Acids Research. PMID 25977295 DOI: 10.1093/nar/gkv473  0.44
2015 Jung M, Kadam S, Xiong W, Rauch TA, Jin SG, Pfeifer GP. MIRA-seq for DNA methylation analysis of CpG islands. Epigenomics. 1-12. PMID 25881900 DOI: 10.2217/epi.15.33  0.32
2015 Iqbal K, Tran DA, Li AX, Warden C, Bai AY, Singh P, Wu X, Pfeifer GP, Szabó PE. Deleterious effects of endocrine disruptors are corrected in the mammalian germline by epigenome reprogramming. Genome Biology. 16: 59. PMID 25853433 DOI: 10.1186/s13059-015-0619-z  0.32
2015 Jung M, Pfeifer GP. Aging and DNA methylation. Bmc Biology. 13: 7. PMID 25637097 DOI: 10.1186/s12915-015-0118-4  0.32
2015 Pfeifer GP. How the environment shapes cancer genomes. Current Opinion in Oncology. 27: 71-7. PMID 25402978 DOI: 10.1097/CCO.0000000000000152  0.32
2014 Fu L, Guerrero CR, Zhong N, Amato NJ, Liu Y, Liu S, Cai Q, Ji D, Jin SG, Niedernhofer LJ, Pfeifer GP, Xu GL, Wang Y. Tet-mediated formation of 5-hydroxymethylcytosine in RNA. Journal of the American Chemical Society. 136: 11582-5. PMID 25073028 DOI: 10.1021/ja505305z  0.44
2014 Pfeifer GP, Xiong W, Hahn MA, Jin SG. The role of 5-hydroxymethylcytosine in human cancer. Cell and Tissue Research. 356: 631-41. PMID 24816989 DOI: 10.1007/s00441-014-1896-7  0.44
2013 Kim SI, Jin SG, Pfeifer GP. Formation of cyclobutane pyrimidine dimers at dipyrimidines containing 5-hydroxymethylcytosine. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 12: 1409-15. PMID 23677065 DOI: 10.1039/c3pp50037c  0.44
2013 Pfeifer GP, Kadam S, Jin SG. 5-hydroxymethylcytosine and its potential roles in development and cancer. Epigenetics & Chromatin. 6: 10. PMID 23634848 DOI: 10.1186/1756-8935-6-10  0.44
2013 Hahn MA, Qiu R, Wu X, Li AX, Zhang H, Wang J, Jui J, Jin SG, Jiang Y, Pfeifer GP, Lu Q. Dynamics of 5-hydroxymethylcytosine and chromatin marks in Mammalian neurogenesis. Cell Reports. 3: 291-300. PMID 23403289 DOI: 10.1016/j.celrep.2013.01.011  0.44
2013 Kalari S, Jung M, Kernstine KH, Takahashi T, Pfeifer GP. The DNA methylation landscape of small cell lung cancer suggests a differentiation defect of neuroendocrine cells Oncogene. 32: 3559-3568. PMID 22907430 DOI: 10.1038/onc.2012.362  0.32
2012 Rauch TA, Wang Z, Wu X, Kernstine KH, Riggs AD, Pfeifer GP. DNA methylation biomarkers for lung cancer. Tumour Biology : the Journal of the International Society For Oncodevelopmental Biology and Medicine. 33: 287-96. PMID 22143938 DOI: 10.1007/s13277-011-0282-2  0.32
2011 Jin SG, Jiang Y, Qiu R, Rauch TA, Wang Y, Schackert G, Krex D, Lu Q, Pfeifer GP. 5-Hydroxymethylcytosine is strongly depleted in human cancers but its levels do not correlate with IDH1 mutations. Cancer Research. 71: 7360-5. PMID 22052461 DOI: 10.1158/0008-5472.CAN-11-2023  0.44
2011 Gu TP, Guo F, Yang H, Wu HP, Xu GF, Liu W, Xie ZG, Shi L, He X, Jin SG, Iqbal K, Shi YG, Deng Z, Szabó PE, Pfeifer GP, et al. The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes. Nature. 477: 606-10. PMID 21892189 DOI: 10.1038/nature10443  0.44
2011 Abe M, Tsai SY, Jin SG, Pfeifer GP, Szabó PE. Sex-specific dynamics of global chromatin changes in fetal mouse germ cells. Plos One. 6: e23848. PMID 21886830 DOI: 10.1371/journal.pone.0023848  0.44
2011 Jin SG, Wu X, Li AX, Pfeifer GP. Genomic mapping of 5-hydroxymethylcytosine in the human brain. Nucleic Acids Research. 39: 5015-24. PMID 21378125 DOI: 10.1093/nar/gkr120  0.44
2011 Iqbal K, Jin SG, Pfeifer GP, Szabó PE. Reprogramming of the paternal genome upon fertilization involves genome-wide oxidation of 5-methylcytosine. Proceedings of the National Academy of Sciences of the United States of America. 108: 3642-7. PMID 21321204 DOI: 10.1073/pnas.1014033108  0.44
2011 Singh P, Wu X, Lee DH, Li AX, Rauch TA, Pfeifer GP, Mann JR, Szabó PE. Chromosome-wide analysis of parental allele-specific chromatin and DNA methylation. Molecular and Cellular Biology. 31: 1757-70. PMID 21321082 DOI: 10.1128/MCB.00961-10  0.32
2010 Lee DH, Singh P, Tsai SY, Oates N, Spalla A, Spalla C, Brown L, Rivas G, Larson G, Rauch TA, Pfeifer GP, Szabó PE. CTCF-dependent chromatin bias constitutes transient epigenetic memory of the mother at the H19-Igf2 imprinting control region in prospermatogonia. Plos Genetics. 6: e1001224. PMID 21124827 DOI: 10.1371/journal.pgen.1001224  0.32
2010 Choi JH, Li Y, Guo J, Pei L, Rauch TA, Kramer RS, Macmil SL, Wiley GB, Bennett LB, Schnabel JL, Taylor KH, Kim S, Xu D, Sreekumar A, Pfeifer GP, et al. Genome-wide DNA methylation maps in follicular lymphoma cells determined by methylation-enriched bisulfite sequencing. Plos One. 5. PMID 20927367 DOI: 10.1371/journal.pone.0013020  0.32
2010 Nguyen A, Rauch TA, Pfeifer GP, Hu VW. Global methylation profiling of lymphoblastoid cell lines reveals epigenetic contributions to autism spectrum disorders and a novel autism candidate gene, RORA, whose protein product is reduced in autistic brain. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 24: 3036-51. PMID 20375269 DOI: 10.1096/fj.10-154484  0.32
2010 Jin SG, Kadam S, Pfeifer GP. Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine. Nucleic Acids Research. 38: e125. PMID 20371518 DOI: 10.1093/nar/gkq223  0.44
2010 Rauch TA, Pfeifer GP. DNA methylation profiling using the methylated-CpG island recovery assay (MIRA). Methods (San Diego, Calif.). 52: 213-7. PMID 20304072 DOI: 10.1016/j.ymeth.2010.03.004  0.32
2010 Wu X, Rauch TA, Zhong X, Bennett WP, Latif F, Krex D, Pfeifer GP. CpG island hypermethylation in human astrocytomas. Cancer Research. 70: 2718-27. PMID 20233874 DOI: 10.1158/0008-5472.CAN-09-3631  0.32
2010 Dunwell T, Hesson L, Rauch TA, Wang L, Clark RE, Dallol A, Gentle D, Catchpoole D, Maher ER, Pfeifer GP, Latif F. A genome-wide screen identifies frequently methylated genes in haematological and epithelial cancers. Molecular Cancer. 9: 44. PMID 20184741 DOI: 10.1186/1476-4598-9-44  0.32
2009 Kuroda A, Rauch TA, Todorov I, Ku HT, Al-Abdullah IH, Kandeel F, Mullen Y, Pfeifer GP, Ferreri K. Insulin gene expression is regulated by DNA methylation. Plos One. 4: e6953. PMID 19742322 DOI: 10.1371/journal.pone.0006953  0.32
2009 Pfeifer GP, Rauch TA. DNA methylation patterns in lung carcinomas. Seminars in Cancer Biology. 19: 181-7. PMID 19429482 DOI: 10.1016/j.semcancer.2009.02.008  0.32
2009 Rauch TA, Wu X, Zhong X, Riggs AD, Pfeifer GP. A human B cell methylome at 100-base pair resolution. Proceedings of the National Academy of Sciences of the United States of America. 106: 671-8. PMID 19139413 DOI: 10.1073/pnas.0812399106  0.32
2009 Rauch TA, Pfeifer GP. The MIRA method for DNA methylation analysis. Methods in Molecular Biology (Clifton, N.J.). 507: 65-75. PMID 18987807 DOI: 10.1007/978-1-59745-522-0_6  0.32
2008 Jin SG, Tsark W, Szabó PE, Pfeifer GP. Haploid male germ cell- and oocyte-specific Mbd3l1 and Mbd3l2 genes are dispensable for early development, fertility, and zygotic DNA demethylation in the mouse. Developmental Dynamics : An Official Publication of the American Association of Anatomists. 237: 3435-43. PMID 18942147 DOI: 10.1002/dvdy.21767  0.44
2008 Jin SG, Guo C, Pfeifer GP. GADD45A does not promote DNA demethylation. Plos Genetics. 4: e1000013. PMID 18369439 DOI: 10.1371/journal.pgen.1000013  0.44
2008 Rauch TA, Zhong X, Wu X, Wang M, Kernstine KH, Wang Z, Riggs AD, Pfeifer GP. High-resolution mapping of DNA hypermethylation and hypomethylation in lung cancer. Proceedings of the National Academy of Sciences of the United States of America. 105: 252-7. PMID 18162535 DOI: 10.1073/pnas.0710735105  0.32
2007 Pfeifer GP, Wang Z, Riggs AD, Rauch TA. Methylated-CpG island recovery assay-assisted microarrays for cancer diagnosis. Expert Opinion On Medical Diagnostics. 1: 99-108. PMID 23489272 DOI: 10.1517/17530059.1.1.99  0.32
2005 Lee DH, Jin SG, Cai S, Chen Y, Pfeifer GP, O'Connor TR. Repair of methylation damage in DNA and RNA by mammalian AlkB homologues. The Journal of Biological Chemistry. 280: 39448-59. PMID 16174769 DOI: 10.1074/jbc.M509881200  0.44
2002 Jiang CL, Jin SG, Lee DH, Lan ZJ, Xu X, O'Connor TR, Szabó PE, Mann JR, Cooney AJ, Pfeifer GP. MBD3L1 and MBD3L2, two new proteins homologous to the methyl-CpG-binding proteins MBD2 and MBD3: characterization of MBD3L1 as a testis-specific transcriptional repressor. Genomics. 80: 621-9. PMID 12504854 DOI: 10.1006/geno.2002.7001  0.44
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