| Year |
Citation |
Score |
| 2023 |
Panigrahi A, Zhang L, Benicky J, Sanda M, Ahn J, Goldman R. A multiplexed microflow LC-MS/MS-PRM assay for serologic quantification of IgG N- and HPX O- glycoforms in liver fibrosis. Scientific Reports. 13: 606. PMID 36635317 DOI: 10.1038/s41598-023-27382-0 |
0.321 |
|
| 2021 |
Sanda M, Ahn J, Kozlik P, Goldman R. Analysis of site and structure specific core fucosylation in liver cirrhosis using exoglycosidase-assisted data-independent LC-MS/MS. Scientific Reports. 11: 23273. PMID 34857845 DOI: 10.1038/s41598-021-02838-3 |
0.395 |
|
| 2020 |
Kozlik P, Molnarova K, Jecmen T, Krizek T, Goldman R. Glycan-specific precipitation of glycopeptides in high organic content sample solvents used in HILIC. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1150: 122196. PMID 32485649 DOI: 10.1016/J.Jchromb.2020.122196 |
0.308 |
|
| 2020 |
Sanda M, Benicky J, Goldman R. Low Collision Energy Fragmentation in Structure-Specific Glycoproteomics Analysis. Analytical Chemistry. 92: 8262-8267. PMID 32441515 DOI: 10.1021/Acs.Analchem.0C00519 |
0.354 |
|
| 2019 |
Benicky J, Sanda M, Brnakova Kennedy Z, Goldman R. -Glycosylation is required for secretion of the precursor to brain-derived neurotrophic factor (proBDNF) carrying sulfated LacdiNAc structures. The Journal of Biological Chemistry. PMID 31558607 DOI: 10.1074/Jbc.Ra119.009989 |
0.353 |
|
| 2019 |
Yuan W, Wei R, Goldman R, Sanda M. Optimized Fragmentation for Quantitative Analysis of Fucosylated N-Glycoproteins by LC-MS-MRM. Analytical Chemistry. PMID 31268672 DOI: 10.1021/Acs.Analchem.9B01983 |
0.462 |
|
| 2018 |
Yuan W, Benicky J, Wei R, Goldman R, Sanda M. Quantitative analysis of SHBG glycosylation in liver diseases by LC/MS-PRM. Journal of Proteome Research. PMID 29972295 DOI: 10.1021/Acs.Jproteome.8B00201 |
0.462 |
|
| 2018 |
Kozlik P, Goldman R, Sanda M. Hydrophilic interaction liquid chromatography in the separation of glycopeptides and their isomers. Analytical and Bioanalytical Chemistry. PMID 29806066 DOI: 10.1007/S00216-018-1150-3 |
0.339 |
|
| 2018 |
Fan Y, Hu Y, Yan C, Goldman R, Pan Y, Mazumder R, Dingerdissen HM. Loss and gain of N-linked glycosylation sequons due to single-nucleotide variation in cancer. Scientific Reports. 8: 4322. PMID 29531238 DOI: 10.1038/S41598-018-22345-2 |
0.36 |
|
| 2018 |
Ma J, Sanda M, Wei R, Zhang L, Goldman R. Quantitative analysis of core fucosylation of serum proteins in liver diseases by LC-MS-MRM. Journal of Proteomics. PMID 29427759 DOI: 10.1016/J.Jprot.2018.02.003 |
0.479 |
|
| 2017 |
Kozlik P, Sanda M, Goldman R. Nano reversed phase versus nano hydrophilic interaction liquid chromatography on a chip in the analysis of hemopexin glycopeptides. Journal of Chromatography. A. PMID 28888681 DOI: 10.1016/J.Chroma.2017.08.066 |
0.39 |
|
| 2017 |
Kozlik P, Goldman R, Sanda M. Study of structure-dependent chromatographic behavior of glycopeptides using reversed phase nanoLC. Electrophoresis. PMID 28444931 DOI: 10.1002/Elps.201600547 |
0.352 |
|
| 2016 |
Sanda M, Zhang L, Edwards NJ, Goldman R. Site-specific analysis of changes in the glycosylation of proteins in liver cirrhosis using data-independent workflow with soft fragmentation. Analytical and Bioanalytical Chemistry. PMID 27822650 DOI: 10.1007/S00216-016-0041-8 |
0.452 |
|
| 2016 |
Sanda M, Benicky J, Wu J, Wang Y, Makambi K, Ahn J, Smith CI, Zhao P, Zhang L, Goldman R. Increased sialylation of site specific O-glycoforms of hemopexin in liver disease. Clinical Proteomics. 13: 24. PMID 27688741 DOI: 10.1186/S12014-016-9125-X |
0.327 |
|
| 2016 |
Sanda M, Goldman R. Data independent analysis of IgG glycoforms in samples of unfractionated human plasma. Analytical Chemistry. PMID 27649061 DOI: 10.1021/Acs.Analchem.6B02554 |
0.372 |
|
| 2016 |
Darebna P, Novak P, Kucera R, Topolcan O, Sanda M, Goldman R, Pompach P. Changes in the expression of N- and O-glycopeptides in patients with colorectal cancer and hepatocellular carcinoma quantified by full-MS scan FT-ICR and multiple reaction monitoring. Journal of Proteomics. PMID 27646713 DOI: 10.1016/J.Jprot.2016.09.004 |
0.45 |
|
| 2016 |
Flowers SA, Zhou X, Wu J, Wang Y, Makambi K, Kallakury BV, Singer MS, Rosen SD, Davidson B, Goldman R. Expression of the extracellular sulfatase SULF2 is associated with squamous cell carcinoma of the head and neck. Oncotarget. PMID 27223083 DOI: 10.18632/Oncotarget.9506 |
0.347 |
|
| 2015 |
Yuan W, Sanda M, Wu J, Koomen J, Goldman R. Quantitative analysis of immunoglobulin subclasses and subclass specific glycosylation by LC-MS-MRM in liver disease. Journal of Proteomics. 116: 24-33. PMID 25582524 DOI: 10.1016/J.Jprot.2014.12.020 |
0.426 |
|
| 2015 |
Goldman R, Sanda M. Targeted methods for quantitative analysis of protein glycosylation. Proteomics. Clinical Applications. 9: 17-32. PMID 25522218 DOI: 10.1002/Prca.201400152 |
0.41 |
|
| 2015 |
Singer MS, Phillips JJ, Lemjabbar-Alaoui H, Wang YQ, Wu J, Goldman R, Rosen SD. SULF2, a heparan sulfate endosulfatase, is present in the blood of healthy individuals and increases in cirrhosis. Clinica Chimica Acta; International Journal of Clinical Chemistry. 440: 72-8. PMID 25444749 DOI: 10.1016/J.Cca.2014.10.038 |
0.321 |
|
| 2014 |
Benicky J, Sanda M, Pompach P, Wu J, Goldman R. Quantification of fucosylated hemopexin and complement factor H in plasma of patients with liver disease. Analytical Chemistry. 86: 10716-23. PMID 25302577 DOI: 10.1021/Ac502727S |
0.472 |
|
| 2014 |
Pompach P, Ashline DJ, Brnakova Z, Benicky J, Sanda M, Goldman R. Protein and site specificity of fucosylation in liver-secreted glycoproteins. Journal of Proteome Research. 13: 5561-9. PMID 25265424 DOI: 10.1021/Pr5005482 |
0.423 |
|
| 2014 |
Chandler KB, Brnakova Z, Sanda M, Wang S, Stalnaker SH, Bridger R, Zhao P, Wells L, Edwards NJ, Goldman R. Site-specific glycan microheterogeneity of inter-alpha-trypsin inhibitor heavy chain H4. Journal of Proteome Research. 13: 3314-29. PMID 24884609 DOI: 10.1021/Pr500394Z |
0.702 |
|
| 2013 |
Chandler KB, Pompach P, Goldman R, Edwards N. Exploring site-specific N-glycosylation microheterogeneity of haptoglobin using glycopeptide CID tandem mass spectra and glycan database search. Journal of Proteome Research. 12: 3652-66. PMID 23829323 DOI: 10.1021/Pr400196S |
0.71 |
|
| 2013 |
Sanda M, Pompach P, Benicky J, Goldman R. LC-MS3 quantification of O-glycopeptides in human serum. Electrophoresis. 34: 2342-9. PMID 23765987 DOI: 10.1002/Elps.201200658 |
0.423 |
|
| 2013 |
An Y, Goldman R. Analysis of peptides by denaturing ultrafiltration and LC-MALDI-TOF-MS. Methods in Molecular Biology (Clifton, N.J.). 1023: 13-9. PMID 23765617 DOI: 10.1007/978-1-4614-7209-4_2 |
0.4 |
|
| 2013 |
Leymarie N, Griffin PJ, Jonscher K, Kolarich D, Orlando R, McComb M, Zaia J, Aguilan J, Alley WR, Altmann F, Ball LE, Basumallick L, Bazemore-Walker CR, Behnken H, Blank MA, ... ... Goldman R, et al. Interlaboratory study on differential analysis of protein glycosylation by mass spectrometry: the ABRF glycoprotein research multi-institutional study 2012. Molecular & Cellular Proteomics : McP. 12: 2935-51. PMID 23764502 DOI: 10.1074/Mcp.M113.030643 |
0.427 |
|
| 2013 |
Lam PV, Goldman R, Karagiannis K, Narsule T, Simonyan V, Soika V, Mazumder R. Structure-based comparative analysis and prediction of N-linked glycosylation sites in evolutionarily distant eukaryotes. Genomics, Proteomics & Bioinformatics. 11: 96-104. PMID 23459159 DOI: 10.1016/J.Gpb.2012.11.003 |
0.354 |
|
| 2013 |
Chandler K, Goldman R. Glycoprotein disease markers and single protein-omics. Molecular & Cellular Proteomics : McP. 12: 836-45. PMID 23399550 DOI: 10.1074/Mcp.R112.026930 |
0.66 |
|
| 2013 |
Pompach P, Brnakova Z, Sanda M, Wu J, Edwards N, Goldman R. Site-specific glycoforms of haptoglobin in liver cirrhosis and hepatocellular carcinoma. Molecular & Cellular Proteomics : McP. 12: 1281-93. PMID 23389049 DOI: 10.1074/Mcp.M112.023259 |
0.466 |
|
| 2013 |
Sanda M, Pompach P, Brnakova Z, Wu J, Makambi K, Goldman R. Quantitative liquid chromatography-mass spectrometry-multiple reaction monitoring (LC-MS-MRM) analysis of site-specific glycoforms of haptoglobin in liver disease. Molecular & Cellular Proteomics : McP. 12: 1294-305. PMID 23389048 DOI: 10.1074/Mcp.M112.023325 |
0.434 |
|
| 2012 |
Ressom HW, Xiao JF, Tuli L, Varghese RS, Zhou B, Tsai TH, Ranjbar MR, Zhao Y, Wang J, Di Poto C, Cheema AK, Tadesse MG, Goldman R, Shetty K. Utilization of metabolomics to identify serum biomarkers for hepatocellular carcinoma in patients with liver cirrhosis. Analytica Chimica Acta. 743: 90-100. PMID 22882828 DOI: 10.1016/J.Aca.2012.07.013 |
0.401 |
|
| 2012 |
Mazumder R, Morampudi KS, Motwani M, Vasudevan S, Goldman R. Proteome-wide analysis of single-nucleotide variations in the N-glycosylation sequon of human genes. Plos One. 7: e36212. PMID 22586465 DOI: 10.1371/Journal.Pone.0036212 |
0.398 |
|
| 2012 |
Bekesova S, Kosti O, Chandler KB, Wu J, Madej HL, Brown KC, Simonyan V, Goldman R. N-glycans in liver-secreted and immunoglogulin-derived protein fractions. Journal of Proteomics. 75: 2216-24. PMID 22326963 DOI: 10.1016/J.Jprot.2012.01.024 |
0.692 |
|
| 2012 |
Lenco J, Lan R, Edwards N, Goldman R. MS/MS library facilitated MRM quantification of native peptides prepared by denaturing ultrafiltration. Proteome Science. 10: 7. PMID 22304756 DOI: 10.1186/1477-5956-10-7 |
0.389 |
|
| 2012 |
Pompach P, Chandler KB, Lan R, Edwards N, Goldman R. Semi-automated identification of N-Glycopeptides by hydrophilic interaction chromatography, nano-reverse-phase LC-MS/MS, and glycan database search. Journal of Proteome Research. 11: 1728-40. PMID 22239659 DOI: 10.1021/Pr201183W |
0.7 |
|
| 2012 |
Isailovic D, Plasencia MD, Gaye MM, Stokes ST, Kurulugama RT, Pungpapong V, Zhang M, Kyselova Z, Goldman R, Mechref Y, Novotny MV, Clemmer DE. Delineating diseases by IMS-MS profiling of serum N-linked glycans. Journal of Proteome Research. 11: 576-85. PMID 22148953 DOI: 10.1021/Pr200777U |
0.46 |
|
| 2012 |
Ressom HW, Xiao JF, Tuli L, Varghese RS, Zhou B, Tsai T, Ranjbar MRN, Wang J, Cheema AK, Tadesse MG, Goldman R, Shetty K. Abstract 4795: Metabolic biomarkers of hepatocellular carcinoma Cancer Research. 72: 4795-4795. DOI: 10.1158/1538-7445.Am2012-4795 |
0.391 |
|
| 2011 |
Kang P, Madera M, Alley WR, Goldman R, Mechref Y, Novotny MV. Glycomic Alterations in the Highly-abundant and Lesser-abundant Blood Serum Protein Fractions for Patients Diagnosed with Hepatocellular Carcinoma. International Journal of Mass Spectrometry. 305: 185-198. PMID 23788846 DOI: 10.1016/J.Ijms.2010.11.007 |
0.472 |
|
| 2010 |
An Y, Bekesova S, Edwards N, Goldman R. Peptides in low molecular weight fraction of serum associated with hepatocellular carcinoma. Disease Markers. 29: 11-20. PMID 20826913 DOI: 10.3233/Dma-2010-0721 |
0.403 |
|
| 2010 |
Tang Z, Varghese RS, Bekesova S, Loffredo CA, Hamid MA, Kyselova Z, Mechref Y, Novotny MV, Goldman R, Ressom HW. Identification of N-glycan serum markers associated with hepatocellular carcinoma from mass spectrometry data. Journal of Proteome Research. 9: 104-12. PMID 19764807 DOI: 10.1021/Pr900397N |
0.441 |
|
| 2010 |
Kosti O, Goldman R, Brnakova Z, Shetty K, Karger B, Rejtar T. Abstract B19: Evaluation of progression of cirrhosis to hepatocellular carcinoma using site-specific protein glycosylation analysis. Cancer Prevention Research. 3. DOI: 10.1158/1940-6207.Prev-10-B19 |
0.439 |
|
| 2010 |
Brnakova Z, Chandler KB, Bekesova S, Lenco J, Bebu I, Kosti O, Shetty K, Korba BE, Ressom HW, Varghese RS, Novotny MV, Goldman R. Abstract 5569: N-glycosylation in cultured cells and hepatocellular carcinoma Cancer Research. 70: 5569-5569. DOI: 10.1158/1538-7445.Am10-5569 |
0.702 |
|
| 2009 |
Lattová E, McKenzie EJ, Gruwel ML, Spicer V, Goldman R, Perreault H. Mass spectrometric study of N-glycans from serum of woodchucks with liver cancer. Rapid Communications in Mass Spectrometry : Rcm. 23: 2983-95. PMID 19685473 DOI: 10.1002/Rcm.4202 |
0.487 |
|
| 2009 |
Goldman R, Ressom HW, Varghese RS, Goldman L, Bascug G, Loffredo CA, Abdel-Hamid M, Gouda I, Ezzat S, Kyselova Z, Mechref Y, Novotny MV. Detection of hepatocellular carcinoma using glycomic analysis. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. 15: 1808-13. PMID 19223512 DOI: 10.1158/1078-0432.Ccr-07-5261 |
0.42 |
|
| 2008 |
Isailovic D, Kurulugama RT, Plasencia MD, Stokes ST, Kyselova Z, Goldman R, Mechref Y, Novotny MV, Clemmer DE. Profiling of human serum glycans associated with liver cancer and cirrhosis by IMS-MS. Journal of Proteome Research. 7: 1109-17. PMID 18237112 DOI: 10.1021/Pr700702R |
0.422 |
|
| 2008 |
Ressom HW, Varghese RS, Goldman L, An Y, Loffredo CA, Abdel-Hamid M, Kyselova Z, Mechref Y, Novotny M, Drake SK, Goldman R. Analysis of MALDI-TOF mass spectrometry data for discovery of peptide and glycan biomarkers of hepatocellular carcinoma. Journal of Proteome Research. 7: 603-10. PMID 18189345 DOI: 10.1021/Pr0705237 |
0.41 |
|
| 2008 |
Gebreselassie D, Lan R, Loffredo C, Goldman R, Abdel-Hamid M. Abstract B57: UBE3A (E6AP) auto antibodies in hepatocellular carcinoma Cancer Prevention Research. 1. DOI: 10.1158/1940-6207.Prev-08-B57 |
0.347 |
|
| 2008 |
Ressom HW, Varghese RS, Goldman L, Loffredo CA, Abdel-Hamid M, Kyselova Z, Mechref Y, Novotny M, Goldman R. Analysis of mass spectrometry data for serum biomarker discovery 2007 Ieee/Nih Life Science Systems and Applications Workshop, Lisa. 172-175. DOI: 10.1109/LSSA.2007.4400912 |
0.325 |
|
| 2007 |
Goldman R, Ressom HW, Abdel-Hamid M, Goldman L, Wang A, Varghese RS, An Y, Loffredo CA, Drake SK, Eissa SA, Gouda I, Ezzat S, Moiseiwitsch FS. Candidate markers for the detection of hepatocellular carcinoma in low-molecular weight fraction of serum. Carcinogenesis. 28: 2149-53. PMID 17724376 DOI: 10.1093/Carcin/Bgm177 |
0.364 |
|
| 2007 |
Ressom HW, Varghese RS, Drake SK, Hortin GL, Abdel-Hamid M, Loffredo CA, Goldman R. Peak selection from MALDI-TOF mass spectra using ant colony optimization Bioinformatics. 23: 619-626. PMID 17237065 DOI: 10.1093/Bioinformatics/Btl678 |
0.317 |
|
| 2006 |
Orvisky E, Drake SK, Martin BM, Abdel-Hamid M, Ressom HW, Varghese RS, An Y, Saha D, Hortin GL, Loffredo CA, Goldman R. Enrichment of low molecular weight fraction of serum for MS analysis of peptides associated with hepatocellular carcinoma. Proteomics. 6: 2895-902. PMID 16586431 DOI: 10.1002/Pmic.200500443 |
0.429 |
|
| 2005 |
Ressom HW, Varghese RS, Abdel-Hamid M, Eissa SA, Saha D, Goldman L, Petricoin EF, Conrads TP, Veenstra TD, Loffredo CA, Goldman R. Analysis of mass spectral serum profiles for biomarker selection. Bioinformatics (Oxford, England). 21: 4039-45. PMID 16159919 DOI: 10.1093/Bioinformatics/Bti670 |
0.361 |
|
| 2005 |
Ressom HW, Varghese RS, Orvisky E, Drake SK, Hortin GL, Abdel-Hamid M, Loffredo CA, Goldman R. Analysis of MALDI-TOF serum profiles for biomarker selection and sample classification Proceedings of the 2005 Ieee Symposium On Computational Intelligence in Bioinformatics and Computational Biology, Cibcb '05. 2005. |
0.302 |
|
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