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Janaka N. Edirisinghe, Ph.D. - Publications

Affiliations: 
2012 Biological Sciences Northern Illinois University, DeKalb, IL, United States 
Area:
Molecular Biology, Biochemistry
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15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Allen BH, Gupta N, Edirisinghe JN, Faria JP, Henry CS. Application of the Metabolic Modeling Pipeline in KBase to Categorize Reactions, Predict Essential Genes, and Predict Pathways in an Isolate Genome. Methods in Molecular Biology (Clifton, N.J.). 2349: 291-320. PMID 34719000 DOI: 10.1007/978-1-0716-1585-0_13  0.379
2020 Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, et al. Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing. Nature Biotechnology. 38: 504. PMID 32265554 DOI: 10.1038/S41587-020-0477-4  0.333
2020 Lieven C, Beber ME, Olivier BG, Bergmann FT, Ataman M, Babaei P, Bartell JA, Blank LM, Chauhan S, Correia K, Diener C, Dräger A, Ebert BE, Edirisinghe JN, Faria JP, et al. MEMOTE for standardized genome-scale metabolic model testing. Nature Biotechnology. PMID 32123384 DOI: 10.1038/S41587-020-0446-Y  0.354
2019 Gupta N, Skinner KA, Summers ZM, Edirisinghe JN, Faria JP, Marshall CW, Sharma A, Gottel NR, Gilbert JA, Henry CS, O'Loughlin EJ. Draft Genome Sequence of sp. Strain ATCC 49988, a Quinoline-Degrading Bacterium. Microbiology Resource Announcements. 8. PMID 31221646 DOI: 10.1128/MRA.00403-19  0.333
2019 Gupta N, Skinner KA, Khan S, Edirisinghe JN, Henry CS. Draft Genome Sequence of sp. Strain A8, a Carbazole-Degrading Bacterium. Microbiology Resource Announcements. 8. PMID 31048380 DOI: 10.1128/MRA.00301-19  0.319
2018 Edirisinghe JN, Faria JP, Harris NL, Allen BH, Henry CS. Reconstruction and Analysis of Central Metabolism in Microbes. Methods in Molecular Biology (Clifton, N.J.). 1716: 111-129. PMID 29222751 DOI: 10.1007/978-1-4939-7528-0_5  0.353
2017 Marshall CW, Ross DE, Handley KM, Weisenhorn PB, Edirisinghe JN, Henry CS, Gilbert JA, May HD, Norman RS. Metabolic Reconstruction and Modeling Microbial Electrosynthesis. Scientific Reports. 7: 8391. PMID 28827682 DOI: 10.1038/S41598-017-08877-Z  0.325
2017 Juárez-Vázquez AL, Edirisinghe JN, Verduzco-Castro EA, Michalska K, Wu C, Noda-García L, Babnigg G, Endres M, Medina-Ruíz S, Santoyo-Flores J, Carrillo-Tripp M, Ton-That H, Joachimiak A, Henry CS, Barona-Gómez F. Author response: Evolution of substrate specificity in a retained enzyme driven by gene loss Elife. DOI: 10.7554/Elife.22679.034  0.308
2016 Faria JP, Davis JJ, Edirisinghe JN, Taylor RC, Weisenhorn P, Olson RD, Stevens RL, Rocha M, Rocha I, Best AA, DeJongh M, Tintle NL, Parrello B, Overbeek R, Henry CS. Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation. Frontiers in Microbiology. 7: 1819. PMID 27933038 DOI: 10.3389/Fmicb.2016.01819  0.369
2016 Edirisinghe JN, Weisenhorn P, Conrad N, Xia F, Overbeek R, Stevens RL, Henry CS. Modeling central metabolism and energy biosynthesis across microbial life. Bmc Genomics. 17: 568. PMID 27502787 DOI: 10.1186/S12864-016-2887-8  0.317
2016 Cuevas DA, Edirisinghe J, Henry CS, Overbeek R, O'Connell TG, Edwards RA. From DNA to FBA: How to Build Your Own Genome-Scale Metabolic Model. Frontiers in Microbiology. 7: 907. PMID 27379044 DOI: 10.3389/Fmicb.2016.00907  0.389
2015 Faria JP, Edirisinghe JN, Davis JJ, Disz T, Hausmann A, Henry CS, Olson R, Overbeek RA, Pusch GD, Shukla M, Vonstein V, Wattam AR. Enabling comparative modeling of closely related genomes: example genus Brucella. 3 Biotech. 5: 101-105. PMID 28324362 DOI: 10.1007/s13205-014-0202-4  0.311
2014 Fagen JR, Leonard MT, McCullough CM, Edirisinghe JN, Henry CS, Davis MJ, Triplett EW. Comparative genomics of cultured and uncultured strains suggests genes essential for free-living growth of Liberibacter. Plos One. 9: e84469. PMID 24416233 DOI: 10.1371/Journal.Pone.0084469  0.405
2012 Vos M, Esposito G, Edirisinghe JN, Vilain S, Haddad DM, Slabbaert JR, Van Meensel S, Schaap O, De Strooper B, Meganathan R, Morais VA, Verstreken P. Vitamin K2 is a mitochondrial electron carrier that rescues pink1 deficiency. Science (New York, N.Y.). 336: 1306-10. PMID 22582012 DOI: 10.1126/Science.1218632  0.507
2011 Eppinger M, Bunk B, Johns MA, Edirisinghe JN, Kutumbaka KK, Koenig SS, Creasy HH, Rosovitz MJ, Riley DR, Daugherty S, Martin M, Elbourne LD, Paulsen I, Biedendieck R, Braun C, et al. Genome sequences of the biotechnologically important Bacillus megaterium strains QM B1551 and DSM319. Journal of Bacteriology. 193: 4199-213. PMID 21705586 DOI: 10.1128/Jb.00449-11  0.468
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