Yinghao Wu - Publications

Affiliations: 
Albert Einstein College of Medicine, New York, New York, United States 
Area:
Computational Biophysics

69 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Wang B, Xie ZR, Chen J, Wu Y. Integrating Structural Information to Study the Dynamics of Protein-Protein Interactions in Cells. Structure (London, England : 1993). PMID 30174150 DOI: 10.1016/j.str.2018.07.010  0.56
2018 Chen J, Wu Y. A Multiscale Computational Model for Simulating the Kinetics of Protein Complex Assembly. Methods in Molecular Biology (Clifton, N.J.). 1764: 401-411. PMID 29605930 DOI: 10.1007/978-1-4939-7759-8_26  0.56
2018 Chen J, Wang B, Wu Y. Structural Characterization and Function Prediction of Immunoglobulin-like Fold in Cell Adhesion and Cell Signaling. Journal of Chemical Information and Modeling. PMID 29356528 DOI: 10.1021/acs.jcim.7b00580  0.56
2017 Chen J, Almo SC, Wu Y. General principles of binding between cell surface receptors and multi-specific ligands: A computational study. Plos Computational Biology. 13: e1005805. PMID 29016600 DOI: 10.1371/journal.pcbi.1005805  0.56
2017 Xie ZR, Chen J, Wu Y. Predicting Protein-protein Association Rates using Coarse-grained Simulation and Machine Learning. Scientific Reports. 7: 46622. PMID 28418043 DOI: 10.1038/srep46622  0.56
2017 Chen J, Wu Y. Understanding the Functional Roles of Multiple Extracellular Domains in Cell Adhesion Molecules with a Coarse-Grained Model. Journal of Molecular Biology. PMID 28237680 DOI: 10.1016/j.jmb.2017.02.013  0.56
2016 Chen J, Xie ZR, Wu Y. Understand protein functions by comparing the similarity of local structural environments. Biochimica Et Biophysica Acta. PMID 27884635 DOI: 10.1016/j.bbapap.2016.11.008  0.56
2016 Chen J, Newhall J, Xie ZR, Leckband D, Wu Y. A Computational Model for Kinetic Studies of Cadherin Binding and Clustering. Biophysical Journal. 111: 1507-1518. PMID 27705773 DOI: 10.1016/j.bpj.2016.08.038  0.56
2016 He B, Li W, Wu Y, Wei F, Gong Z, Bo H, Wang Y, Li X, Xiang B, Guo C, Liao Q, Chen P, Zu X, Zhou M, Ma J, et al. Epstein-Barr virus-encoded miR-BART6-3p inhibits cancer cell metastasis and invasion by targeting long non-coding RNA LOC553103. Cell Death & Disease. 7: e2353. PMID 27584792 DOI: 10.1038/cddis.2016.253  1
2016 Li J, Tang J, Ma J, Du M, Wang R, Wu Y. Dynamic transition of neuronal firing induced by abnormal astrocytic glutamate oscillation. Scientific Reports. 6: 32343. PMID 27573570 DOI: 10.1038/srep32343  1
2016 Cai Q, Li DK, Zhou RR, Zhuang SY, Ma JT, Wu YD, Wu AX. Acid-Catalyzed Multicomponent Tandem Double Cyclization: A One-pot, Metal-free Route to Synthesize Polyfunctional 4,9-Dihydropyrrolo[2,1-b]quinazolines. The Journal of Organic Chemistry. PMID 27504693 DOI: 10.1021/acs.joc.6b01660  0.52
2016 Zhang F, Wu L, Qian J, Qu B, Xia S, La T, Wu Y, Ma J, Zeng J, Guo Q, Cui Y, Yang W, Huang J, Zhu W, Yao Y, et al. Identification of the long noncoding RNA NEAT1 as a novel inflammatory regulator acting through MAPK pathway in human lupus. Journal of Autoimmunity. PMID 27481557 DOI: 10.1016/j.jaut.2016.07.012  1
2016 Gallego-Perez D, Chang L, Shi J, Ma J, Kim SH, Zhao X, Malkoc V, Wang X, Minata M, Kwak KJ, Wu Y, Lafyatis G, Lu W, Hansford DJ, Nakano I, et al. On-chip clonal analysis of glioma stem cell motility and therapy resistance. Nano Letters. PMID 27420544 DOI: 10.1021/acs.nanolett.6b00902  1
2016 Wu YH, Han ZB, Ma JZ, He Y, Liu LY, Xin SG, Yu Z. [Intermolecular Interactions between Cytisine and Bovine Serum Albumin A Synchronous Fluorescence Spectroscopic Analysis and Molecular Docking Research]. Guang Pu Xue Yu Guang Pu Fen Xi = Guang Pu. 36: 765-9. PMID 27400521  0.4
2016 Zheng KL, Shu WM, Ma JR, Wu YD, Wu AX. Acid-Mediated N-H/α,β-C(sp(3))-H Trifunctionalization of Pyrrolidine: Intermolecular [3 + 2] Cycloaddition for the Construction of 2,3-Dihydro-1H-Pyrrolizine Derivatives. Organic Letters. PMID 27396906 DOI: 10.1021/acs.orglett.6b01369  0.52
2016 Li X, Zhou Z, Ding J, Wu Y, Zhou B, Wang R, Ma J, Wang S, Zhang X, Xia Z, Chen J, Wu J. Combined Linkage and Association Mapping Reveals QTL and Candidate Genes for Plant and Ear Height in Maize. Frontiers in Plant Science. 7: 833. PMID 27379126 DOI: 10.3389/fpls.2016.00833  1
2016 Xia L, Wu Y, Ma JI, Yang J, Zhang F. The antibacterial peptide from Bombyx mori cecropinXJ induced growth arrest and apoptosis in human hepatocellular carcinoma cells. Oncology Letters. 12: 57-62. PMID 27347099 DOI: 10.3892/ol.2016.4601  0.32
2016 Wu Y, Liu J, Ma J, Liu Y, Wang Y, Wu D. Ratiometric nanothermometer based on Rhodamine dye-incorporated F127-melamine-formaldehyde polymer nanoparticle: preparation, characterization, wide-range temperature sensing, and precise intracellular thermometry. Acs Applied Materials & Interfaces. PMID 27197838 DOI: 10.1021/acsami.6b03366  1
2016 Wu YD, Zhou DH, Zhang LX, Zheng WB, Ma JG, Wang M, Zhu XQ, Xu MJ. Recombinase polymerase amplification (RPA) combined with lateral flow (LF) strip for equipment-free detection of Cryptosporidium spp. oocysts in dairy cattle feces. Parasitology Research. PMID 27174027 DOI: 10.1007/s00436-016-5120-4  0.52
2016 Wu Y, Zhao X, Chen C, He J, Rong J, Ma J. Modeling the influence of Chevron alignment sign on young male driver performance: A driving simulator study. Accident; Analysis and Prevention. PMID 27161563 DOI: 10.1016/j.aap.2016.04.024  1
2016 Chen J, Xie ZR, Wu Y. Elucidating the Functional Roles of Spatial Organization in Cross-Membrane Signal Transduction by a Hybrid Simulation Method. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 27028148 DOI: 10.1089/cmb.2015.0227  0.56
2016 Wei L, Ma J, Wang S, Wu Y. Isolation and Functional Characterization of a Novel Gene Encoding a Dehydration Responsive Element Binding Transcription Factor from Populus euphratica. Protein and Peptide Letters. PMID 27001404  1
2016 Wang M, Lü XY, Ma JY, Xiong H, Si LG, Wu Y. Controllable chaos in hybrid electro-optomechanical systems. Scientific Reports. 6: 22705. PMID 26948505 DOI: 10.1038/srep22705  0.6
2016 Guo R, Ai L, Cao N, Ma J, Wu Y, Wu J, Sun X. Physicochemical properties and structural characterization of a galactomannan from Sophora alopecuroides L. seeds. Carbohydrate Polymers. 140: 451-60. PMID 26876873 DOI: 10.1016/j.carbpol.2015.12.058  1
2016 Xie ZR, Chen J, Wu Y. A Multi-Scale Model for the Assembling Kinetics of Protein Complexes. The Journal of Physical Chemistry. B. PMID 26738810 DOI: 10.1021/acs.jpcb.5b08962  0.72
2015 ZHENG WB, WU YD, MA JG, ZHU XQ, ZHOU DH. [Recombinase Polymerase Amplification and its Applications in Parasite Detection]. Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi = Chinese Journal of Parasitology & Parasitic Diseases. 33: 382-6. PMID 26931046  0.52
2015 Wu Y, Wang X, Wang C, Sun Q, Song N, Zhou Y, Jiang Q, Qiao Y, Xu J, Liang L, Tang H, Ma J, Gao X, Chen SD. Prevalence and clinical features of non-motor symptoms of essential tremor in Shanghai rural area. Parkinsonism & Related Disorders. PMID 26777409 DOI: 10.1016/j.parkreldis.2015.10.617  1
2015 Su Y, Ma J, Du L, Xia J, Wu Y, Jia X, Cai Y, Li Y, Zhao J, Liu Q. Application of acoustic radiation force impulse imaging (ARFI) in quantitative evaluation of neonatal brain development. Clinical and Experimental Obstetrics & Gynecology. 42: 797-800. PMID 26753489  1
2015 Wang R, Zhang ZZ, Ma J, Yang Y, Lin P, Wu Y. Spectral properties of the temporal evolution of brain network structure. Chaos (Woodbury, N.Y.). 25: 123112. PMID 26723151 DOI: 10.1063/1.4937451  1
2015 Wu L, Qin Y, Xia S, Dai M, Han X, Wu Y, Zhang X, Ma J, Wang Y, Tang Y, Liu Z, Zhu W, Jallal B, Yao Y, Qu B, et al. Identification of Cyclin-dependent Kinase 1 as a Novel Regulator of Type 1 Interferon Signaling in Systemic Lupus Erythematosus. Arthritis & Rheumatology (Hoboken, N.J.). PMID 26663909 DOI: 10.1002/art.39543  1
2015 Yao Y, Wu Y, Wang Y, Verginelli I, Zeng T, Suuberg EM, Jiang L, Wen Y, Ma J. A petroleum vapor intrusion model involving upward advective soil gas flow due to methane generation. Environmental Science & Technology. PMID 26322369 DOI: 10.1021/acs.est.5b01314  1
2015 Song J, Wu Y, Nie F, Wang B, Li Y, Shu A, Ma Y, Zhang R, Kelsoe JR, Ma J. [Analysis of chromosome regions 8q11.1-q13.3, 1q32-q34.3 and 14q31.1-q13.3 in a Chinese family with congenital preauricular fistula]. Zhonghua Yi Xue Yi Chuan Xue Za Zhi = Zhonghua Yixue Yichuanxue Zazhi = Chinese Journal of Medical Genetics. 32: 472-5. PMID 26252087 DOI: 10.3760/cma.j.issn.1003-9406.2015.04.004  1
2015 Wu Y, Long Y, Li QL, Han S, Ma J, Yang YW, Gao H. Layer-by-Layer (LBL) Self-Assembled Biohybrid Nanomaterials for Efficient Antibacterial Applications. Acs Applied Materials & Interfaces. PMID 26192024 DOI: 10.1021/acsami.5b04216  1
2015 Yin L, Wu Y, Gao J, Ma J, Hu Z, Zou G, Zhang Q. Optically binary liquid crystalline blue phases induced by one-armed cholesterol-linked azobenzene molecules. Soft Matter. PMID 26144839 DOI: 10.1039/c5sm01062d  1
2015 Zhou C, Wu YL, Chen G, Feng J, Liu XQ, Wang C, Zhang S, Wang J, Zhou S, Ren S, Lu S, Zhang L, Hu C, Hu C, Luo Y, et al. Final overall survival results from a randomised, Phase III study of erlotinib versus chemotherapy as first-line treatment of EGFR mutation-positive advanced non-small-cell lung cancer (OPTIMAL, CTONG-0802). Annals of Oncology : Official Journal of the European Society For Medical Oncology / Esmo. PMID 26141208 DOI: 10.1093/annonc/mdv276  1
2015 Zhang CR, Ma JG, Zhe JW, Jin NZ, Shen YL, Wu YZ, Chen YH, Liu ZJ, Chen HS. The electronic structure engineering of organic dye sensitizers for solar cells: The case of JK derivatives. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 150: 855-866. PMID 26116996 DOI: 10.1016/j.saa.2015.06.060  0.52
2015 Sun L, Miao Z, Cai C, Zhang D, Zhao M, Wu Y, Zhang X, Swarm SA, Zhou L, Zhang ZJ, Nelson RL, Ma J. GmHs1-1, encoding a calcineurin-like protein, controls hard-seededness in soybean. Nature Genetics. PMID 26098868 DOI: 10.1038/ng.3339  1
2015 Wu Y, Zhang H, Liu Y, Chen W, Ma J, Li S, Qin Z. Synthesis and Gas Sensing Properties of Single La-Doped SnO2 Nanobelts. Sensors (Basel, Switzerland). 15: 14230-40. PMID 26087374 DOI: 10.3390/s150614230  1
2015 Ma J, You C, Si LG, Xiong H, Li J, Yang X, Wu Y. Optomechanically induced transparency in the presence of an external time-harmonic-driving force. Scientific Reports. 5: 11278. PMID 26062029 DOI: 10.1038/srep11278  0.6
2015 Chen J, Xie ZR, Wu Y. Study of protein structural deformations under external mechanical perturbations by a coarse-grained simulation method. Biomechanics and Modeling in Mechanobiology. PMID 26049804 DOI: 10.1007/s10237-015-0690-0  0.72
2015 Jiang QW, Wang C, Zhou Y, Hou MM, Wang X, Tang HD, Wu YW, Ma JF, Chen SD. Plasma epidermal growth factor decreased in the early stage of Parkinson's disease. Aging and Disease. 6: 168-73. PMID 26029474 DOI: 10.14336/AD.2014.0925  0.36
2015 Wu Y, Zhang F, Ma J, Zhang X, Wu L, Qu B, Xia S, Chen S, Tang Y, Shen N. Association of large intergenic noncoding RNA expression with disease activity and organ damage in systemic lupus erythematosus. Arthritis Research & Therapy. 17: 131. PMID 25994030 DOI: 10.1186/s13075-015-0632-3  1
2015 He FJ, Wu Y, Feng XX, Ma J, Ma Y, Wang H, Zhang J, Yuan J, Lin CP, Nowson C, MacGregor GA. School based education programme to reduce salt intake in children and their families (School-EduSalt): cluster randomised controlled trial. Bmj (Clinical Research Ed.). 350: h770. PMID 25788018 DOI: 10.1136/BMJ.h770  1
2015 Wu Y, Ma J, Woods PS, Chesarino NM, Liu C, Lee LJ, Nana-Sinkam SP, Davis IC. Selective targeting of alveolar type II respiratory epithelial cells by anti-surfactant protein-C antibody-conjugated lipoplexes. Journal of Controlled Release : Official Journal of the Controlled Release Society. 203: 140-9. PMID 25687308 DOI: 10.1016/j.jconrel.2015.02.016  1
2015 Ma J, Jiang Q, Xu J, Sun Q, Qiao Y, Chen W, Wu Y, Wang Y, Xiao Q, Liu J, Tang H, Chen S. Plasma insulin-like growth factor 1 is associated with cognitive impairment in Parkinson's disease. Dementia and Geriatric Cognitive Disorders. 39: 251-6. PMID 25661865 DOI: 10.1159/000371510  1
2015 Wu Y, Wang L, Ma J, Song Y, Zhang P, Luo A, Fu C, Cao Z, Wang X, Shryock JC, Belardinelli L. Protein kinase C and Ca(2+) -calmodulin-dependent protein kinase II mediate the enlarged reverse INCX induced by ouabain-increased late sodium current in rabbit ventricular myocytes. Experimental Physiology. 100: 399-409. PMID 25641541 DOI: 10.1113/expphysiol.2014.083972  1
2015 Yao Y, Wu Y, Suuberg EM, Provoost J, Shen R, Ma J, Liu J. Vapor intrusion attenuation factors relative to subslab and source, reconsidered in light of background data. Journal of Hazardous Materials. 286: 553-61. PMID 25618001 DOI: 10.1016/j.jhazmat.2015.01.013  1
2015 Xie ZR, Chen J, Zhao Y, Wu Y. Decomposing the space of protein quaternary structures with the interface fragment pair library. Bmc Bioinformatics. 16: 14. PMID 25592649 DOI: 10.1186/s12859-014-0437-4  0.56
2015 Zhao X, Ding H, Wu Y, Ma J, Zhong L. Experimental research on safety impacts of the inside shoulder based on driving simulation. Accident; Analysis and Prevention. 76: 6-14. PMID 25557094 DOI: 10.1016/j.aap.2014.12.014  1
2015 Ma J, Zhao D, Wu Y, Xu C, Zhang F. Cyclic stretch induced gene expression of extracellular matrix and adhesion molecules in human periodontal ligament cells. Archives of Oral Biology. 60: 447-55. PMID 25541636 DOI: 10.1016/j.archoralbio.2014.11.019  1
2014 Ma JG, Zhang CR, Gong JJ, Yang B, Zhang HM, Wang W, Wu YZ, Chen YH, Chen HS. The adsorption of α-cyanoacrylic acid on anatase TiO2 (101) and (001) surfaces: a density functional theory study. The Journal of Chemical Physics. 141: 234705. PMID 25527955 DOI: 10.1063/1.4903790  0.52
2014 Xie ZR, Chen J, Wu Y. Linking 3D and 2D binding kinetics of membrane proteins by multiscale simulations. Protein Science : a Publication of the Protein Society. 23: 1789-99. PMID 25271078 DOI: 10.1002/pro.2574  0.56
2014 Chen J, Xie ZR, Wu Y. Computational modeling of the interplay between cadherin-mediated cell adhesion and Wnt signaling pathway. Plos One. 9: e100702. PMID 24967587 DOI: 10.1371/journal.pone.0100702  0.56
2014 Chen J, Xie ZR, Wu Y. A multiscale model for simulating binding kinetics of proteins with flexible linkers. Proteins. 82: 2512-22. PMID 24888574 DOI: 10.1002/prot.24614  0.56
2014 Xie ZR, Chen J, Wu Y. A coarse-grained model for the simulations of biomolecular interactions in cellular environments. The Journal of Chemical Physics. 140: 054112. PMID 24511927 DOI: 10.1063/1.4863992  0.56
2011 Harrison OJ, Jin X, Hong S, Bahna F, Ahlsen G, Brasch J, Wu Y, Vendome J, Felsovalyi K, Hampton CM, Troyanovsky RB, Ben-Shaul A, Frank J, Troyanovsky SM, Shapiro L, et al. The extracellular architecture of adherens junctions revealed by crystal structures of type I cadherins. Structure (London, England : 1993). 19: 244-56. PMID 21300292 DOI: 10.1016/j.str.2010.11.016  0.72
2010 Wu Y, Jin X, Harrison O, Shapiro L, Honig BH, Ben-Shaul A. Cooperativity between trans and cis interactions in cadherin-mediated junction formation. Proceedings of the National Academy of Sciences of the United States of America. 107: 17592-7. PMID 20876147 DOI: 10.1073/pnas.1011247107  0.72
2009 Chen M, Dousis AD, Wu Y, Wittung-Stafshede P, Ma J. Predicting protein folding cores by empirical potential functions. Archives of Biochemistry and Biophysics. 483: 16-22. PMID 19135974 DOI: 10.1016/j.abb.2008.12.011  0.72
2009 Wu Y, Dousis AD, Chen M, Li J, Ma J. OPUS-Dom: applying the folding-based method VECFOLD to determine protein domain boundaries. Journal of Molecular Biology. 385: 1314-29. PMID 19026662 DOI: 10.1016/j.jmb.2008.10.093  0.72
2007 Wu Y, Lu M, Chen M, Li J, Ma J. OPUS-Ca: a knowledge-based potential function requiring only Calpha positions. Protein Science : a Publication of the Protein Society. 16: 1449-63. PMID 17586777 DOI: 10.1110/ps.072796107  1
2006 Chen M, Wilson CJ, Wu Y, Wittung-Stafshede P, Ma J. Correlation between protein stability cores and protein folding kinetics: a case study on Pseudomonas aeruginosa apo-azurin. Structure (London, England : 1993). 14: 1401-10. PMID 16962971 DOI: 10.1016/j.str.2006.07.007  0.72
2005 Wu Y, Tian X, Lu M, Chen M, Wang Q, Ma J. Folding of small helical proteins assisted by small-angle X-ray scattering profiles. Structure (London, England : 1993). 13: 1587-97. PMID 16271882 DOI: 10.1016/j.str.2005.07.023  1
2005 Wu Y, Chen M, Lu M, Wang Q, Ma J. Determining protein topology from skeletons of secondary structures. Journal of Molecular Biology. 350: 571-86. PMID 15961102 DOI: 10.1016/j.jmb.2005.04.064  1
2005 Wu Y. Two-color ultraslow optical solitons via four-wave mixing in cold-atom media Physical Review a - Atomic, Molecular, and Optical Physics. 71. DOI: 10.1103/PhysRevA.71.053820  0.6
2004 Wu Y, Ma J. Refinement of F-actin model against fiber diffraction data by long-range normal modes. Biophysical Journal. 86: 116-24. PMID 14695255 DOI: 10.1016/S0006-3495(04)74089-8  1
2003 Ming D, Kong Y, Wu Y, Ma J. Simulation of F-actin filaments of several microns. Biophysical Journal. 85: 27-35. PMID 12829461 DOI: 10.1016/S0006-3495(03)74451-8  1
2003 Kong Y, Ming D, Wu Y, Stoops JK, Zhou ZH, Ma J. Conformational flexibility of pyruvate dehydrogenase complexes: a computational analysis by quantized elastic deformational model. Journal of Molecular Biology. 330: 129-35. PMID 12818207  1
2003 Ming D, Kong Y, Wu Y, Ma J. Substructure synthesis method for simulating large molecular complexes. Proceedings of the National Academy of Sciences of the United States of America. 100: 104-9. PMID 12518058 DOI: 10.1073/pnas.232588999  1
2000 Wu Y. Quantum theory of microcavity-modified fluorescence decay rate under a strong coupling condition Physical Review a - Atomic, Molecular, and Optical Physics. 61: 338031-338036.  0.6
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