Sanguk Kim, Ph.D. - Publications

Affiliations: 
1998-2002 Molecular Biophysics Florida State University, Tallahassee, FL, United States 
 2002-2005 Biochemistry University of California, Los Angeles, Los Angeles, CA 
 2005- Life Science postech, Pohang, Gyeongsangbuk-do, South Korea 
Area:
Computational Biology, Solid State Protein NMR
Website:
http://sbi.postech.ac.kr

61 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Kim I, Lee H, Lee K, Han SK, Kim D, Kim S. Link clustering explains non-central and contextually essential genes in protein interaction networks. Scientific Reports. 9: 11672. PMID 31406201 DOI: 10.1038/s41598-019-48273-3  1
2019 Shen Q, Lee K, Han SK, Ahn HJ, Kim S, Lee JH. Variants at potential loci associated with Sjogren's syndrome in Koreans: A genetic association study. Clinical Immunology (Orlando, Fla.). PMID 31349012 DOI: 10.1016/j.clim.2019.07.010  1
2019 Kim D, Han SK, Lee K, Kim I, Kong J, Kim S. Evolutionary coupling analysis identifies the impact of disease-associated variants at less-conserved sites. Nucleic Acids Research. PMID 31199866 DOI: 10.1093/nar/gkz536  1
2019 Han SK, Kong J, Kim S, Lee JH, Han DH. Exomic and transcriptomic alterations of hereditary gingival fibromatosis. Oral Diseases. PMID 30907493 DOI: 10.1111/odi.13093  1
2019 An SWA, Choi ES, Hwang W, Son HG, Yang JS, Seo K, Nam HJ, Nguyen NTH, Kim EJE, Suh BK, Kim Y, Nakano S, Ryu Y, Man Ha C, Mori I, ... ... Kim S, et al. KIN-4/MAST kinase promotes PTEN-mediated longevity of Caenorhabditis elegans via binding through a PDZ domain. Aging Cell. e12906. PMID 30773781 DOI: 10.1111/acel.12906  1
2018 Han SK, Kim D, Lee H, Kim I, Kim S. Divergence of non-coding regulatory elements explains gene-phenotype differences between human and mouse orthologous genes. Molecular Biology and Evolution. PMID 29697819 DOI: 10.1093/molbev/msy056  1
2017 Kim E, Kim D, Lee JS, Yoe J, Park J, Kim CJ, Jeong D, Kim S, Lee Y. Capicua suppresses hepatocellular carcinoma progression by controlling ETV4-MMP1 axis. Hepatology (Baltimore, Md.). PMID 29251790 DOI: 10.1002/hep.29738  0.48
2017 Luo K, Wang J, Kim SY, Kim SH, Oh DH. Experimental studies and modeling the behavior of anaerobic growth of Clostridium perfringens in cooked rice under non-isothermal conditions Food Control. 71: 137-142. DOI: 10.1016/j.foodcont.2016.06.029  0.32
2017 Pham-Cong D, Park JS, Kim JH, Kim J, Braun PV, Choi JH, Kim SJ, Jeong SY, Cho CR. Enhanced cycle stability of polypyrrole-derived nitrogen-doped carbon-coated tin oxide hollow nanofibers for lithium battery anodes Carbon. 111: 28-37. DOI: 10.1016/j.carbon.2016.09.057  1
2016 Kwon EK, Min CK, Kim Y, Lee JW, Aigerim A, Schmidt S, Nam HJ, Han SK, Kim K, Cha JS, Kim H, Kim S, Cho HS, Choi MS, Cho NH. Constitutive activation of T cells by γ2-herpesviral GPCR through the interaction with cellular CXCR4. Biochimica Et Biophysica Acta. PMID 27751885 DOI: 10.1016/j.bbamcr.2016.10.008  1
2016 Han SK, Lee D, Lee H, Kim D, Son HG, Yang JS, Lee SV, Kim S. OASIS 2: online application for survival analysis 2 with features for the analysis of maximal lifespan and healthspan in aging research. Oncotarget. PMID 27528229 DOI: 10.18632/oncotarget.11269  1
2016 Kim Y, Cheon S, Min CK, Sohn KM, Kang YJ, Cha YJ, Kang JI, Han SK, Ha NY, Kim G, Aigerim A, Shin HM, Choi MS, Kim S, Cho HS, et al. Spread of Mutant Middle East Respiratory Syndrome Coronavirus with Reduced Affinity to Human CD26 during the South Korean Outbreak. Mbio. 7. PMID 26933050 DOI: 10.1128/mBio.00019-16  1
2016 Seo YJ, Kim J, Kim SH. The change of hippocampal volume and its relevance with inner ear function in Meniere's disease patients. Auris, Nasus, Larynx. PMID 26856304 DOI: 10.1016/j.anl.2016.01.006  1
2016 Kim S, Park G, Lee Y, Choi S. Customer emotions and their triggers in luxury retail: Understanding the effects of customer emotions before and after entering a luxury shop Journal of Business Research. 69: 5809-5818. DOI: 10.1016/j.jbusres.2016.04.178  0.48
2016 Vo TK, Lee OK, Lee EY, Kim CH, Seo JW, Kim J, Kim SS. Kinetics study of the hydrothermal liquefaction of the microalga Aurantiochytrium sp. KRS101 Chemical Engineering Journal. 306: 763-771. DOI: 10.1016/j.cej.2016.07.104  1
2015 Han SK, Kim I, Hwang J, Kim S. Network Modules of the Cross-Species Genotype-Phenotype Map Reflect the Clinical Severity of Human Diseases. Plos One. 10: e0136300. PMID 26301634 DOI: 10.1371/journal.pone.0136300  1
2015 Seo M, Seo K, Hwang W, Koo HJ, Hahm JH, Yang JS, Han SK, Hwang D, Kim S, Jang SK, Lee Y, Nam HG, Lee SV. RNA helicase HEL-1 promotes longevity by specifically activating DAF-16/FOXO transcription factor signaling in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. PMID 26195740 DOI: 10.1073/pnas.1505451112  1
2015 Nam HJ, Kim I, Bowie JU, Kim S. Metazoans evolved by taking domains from soluble proteins to expand intercellular communication network. Scientific Reports. 5: 9576. PMID 25923201 DOI: 10.1038/srep09576  1
2014 Kim I, Lee H, Han SK, Kim S. Linear motif-mediated interactions have contributed to the evolution of modularity in complex protein interaction networks. Plos Computational Biology. 10: e1003881. PMID 25299147 DOI: 10.1371/journal.pcbi.1003881  1
2014 Hwang AB, Ryu EA, Artan M, Chang HW, Kabir MH, Nam HJ, Lee D, Yang JS, Kim S, Mair WB, Lee C, Lee SS, Lee SJ. Feedback regulation via AMPK and HIF-1 mediates ROS-dependent longevity in Caenorhabditis elegans. Proceedings of the National Academy of Sciences of the United States of America. 111: E4458-67. PMID 25288734 DOI: 10.1073/pnas.1411199111  1
2014 Lee S, Kim JY, Hwang J, Kim S, Lee JH, Han DH. Investigation of pathogenic genes in peri-implantitis from implant clustering failure patients: a whole-exome sequencing pilot study. Plos One. 9: e99360. PMID 24921256 DOI: 10.1371/journal.pone.0099360  1
2014 Kim DC, Yun SJ, Park YS, Jun DJ, Kim D, Jiten Singh N, Kim S, Kim KT. Pyrilamine inhibits nicotine-induced catecholamine secretion. Neurochemistry International. 74: 42-5. PMID 24813183 DOI: 10.1016/j.neuint.2014.04.015  1
2013 Skorupka K, Han SK, Nam HJ, Kim S, Faham S. Protein design by fusion: implications for protein structure prediction and evolution. Acta Crystallographica. Section D, Biological Crystallography. 69: 2451-60. PMID 24311586 DOI: 10.1107/S0907444913022701  1
2013 Nam HJ, Han SK, Bowie JU, Kim S. Rampant exchange of the structure and function of extramembrane domains between membrane and water soluble proteins. Plos Computational Biology. 9: e1002997. PMID 23555228 DOI: 10.1371/journal.pcbi.1002997  1
2013 Yang JS, Kim J, Park S, Jeon J, Shin YE, Kim S. Spatial and functional organization of mitochondrial protein network. Scientific Reports. 3: 1403. PMID 23466738 DOI: 10.1038/srep01403  1
2013 Seo SW, Yang JS, Kim I, Yang J, Min BE, Kim S, Jung GY. Predictive design of mRNA translation initiation region to control prokaryotic translation efficiency. Metabolic Engineering. 15: 67-74. PMID 23164579 DOI: 10.1016/j.ymben.2012.10.006  1
2012 Kim J, Kim I, Han SK, Bowie JU, Kim S. Network rewiring is an important mechanism of gene essentiality change Scientific Reports. 2. PMID 23198090 DOI: 10.1038/srep00900  1
2012 Park S, Yang JS, Kim J, Shin YE, Hwang J, Park J, Jang SK, Kim S. Evolutionary history of human disease genes reveals phenotypic connections and comorbidity among genetic diseases. Scientific Reports. 2: 757. PMID 23091697 DOI: 10.1038/srep00757  1
2012 Meruelo AD, Han SK, Kim S, Bowie JU. Structural differences between thermophilic and mesophilic membrane proteins Protein Science. 21: 1746-1753. PMID 23001966 DOI: 10.1002/pro.2157  1
2012 Cho BA, Ko Y, Kim YS, Kim S, Choi MS, Kim IS, Kim HR, Cho NH. Phenotypic characterization of peripheral T cells and their dynamics in scrub typhus patients. Plos Neglected Tropical Diseases. 6: e1789. PMID 22905277 DOI: 10.1371/journal.pntd.0001789  1
2012 Kim JK, Kwon O, Kim J, Kim EK, Park HK, Lee JE, Kim KL, Choi JW, Lim S, Seok H, Lee-Kwon W, Choi JH, Kang BH, Kim S, Ryu SH, et al. PDZ domain-containing 1 (PDZK1) protein regulates phospholipase C-β3 (PLC-β3)-specific activation of somatostatin by forming a ternary complex with PLC-β3 and somatostatin receptors. The Journal of Biological Chemistry. 287: 21012-24. PMID 22528496 DOI: 10.1074/jbc.M111.337865  1
2012 Kim J, Kim I, Yang JS, Shin YE, Hwang J, Park S, Choi YS, Kim S. Rewiring of PDZ domain-ligand interaction network contributed to eukaryotic evolution. Plos Genetics. 8: e1002510. PMID 22346764 DOI: 10.1371/journal.pgen.1002510  1
2011 Yang JS, Nam HJ, Seo M, Han SK, Choi Y, Nam HG, Lee SJ, Kim S. OASIS: online application for the survival analysis of lifespan assays performed in aging research. Plos One. 6: e23525. PMID 21858155 DOI: 10.1371/journal.pone.0023525  1
2011 Lee J, Lee H, Kim J, Lee S, Kim DH, Kim S, Hwang I. Both the hydrophobicity and a positively charged region flanking the C-terminal region of the transmembrane domain of signal-anchored proteins play critical roles in determining their targeting specificity to the endoplasmic reticulum or endosymbiotic organelles in Arabidopsis cells. The Plant Cell. 23: 1588-607. PMID 21515817 DOI: 10.1105/tpc.110.082230  1
2011 Jeon J, Nam HJ, Choi YS, Yang JS, Hwang J, Kim S. Molecular evolution of protein conformational changes revealed by a network of evolutionarily coupled residues. Molecular Biology and Evolution. 28: 2675-85. PMID 21470969 DOI: 10.1093/molbev/msr094  1
2011 Kim JK, Lim S, Kim J, Kim S, Kim JH, Ryu SH, Suh PG. Subtype-specific roles of phospholipase C-β via differential interactions with PDZ domain proteins. Advances in Enzyme Regulation. 51: 138-51. PMID 21035486 DOI: 10.1016/j.advenzreg.2010.10.004  1
2010 Choi YS, Han SK, Kim J, Yang JS, Jeon J, Ryu SH, Kim S. ConPlex: a server for the evolutionary conservation analysis of protein complex structures. Nucleic Acids Research. 38: W450-6. PMID 20435678 DOI: 10.1093/nar/gkq328  1
2009 Nam HJ, Jeon J, Kim S. Bioinformatic approaches for the structure and function of membrane proteins. Bmb Reports. 42: 697-704. PMID 19944009  1
2008 Min CK, Bang SY, Cho BA, Choi YH, Yang JS, Lee SH, Seong SY, Kim KW, Kim S, Jung JU, Choi MS, Kim IS, Cho NH. Role of amphipathic helix of a herpesviral protein in membrane deformation and T cell receptor downregulation. Plos Pathogens. 4: e1000209. PMID 19023411 DOI: 10.1371/journal.ppat.1000209  1
2008 Page RC, Kim S, Cross TA. Transmembrane Helix Uniformity Examined by Spectral Mapping of Torsion Angles Structure. 16: 787-797. PMID 18462683 DOI: 10.1016/j.str.2008.02.018  1
2008 Lim do H, Kim J, Kim S, Carthew RW, Lee YS. Functional analysis of dicer-2 missense mutations in the siRNA pathway of Drosophila. Biochemical and Biophysical Research Communications. 371: 525-30. PMID 18454937 DOI: 10.1016/j.bbrc.2008.04.118  1
2008 Kim YY, Kim DY, Shim D, Song WY, Lee J, Schroeder JI, Kim S, Moran N, Lee Y. Expression of the novel wheat gene TM20 confers enhanced cadmium tolerance to bakers' yeast. The Journal of Biological Chemistry. 283: 15893-902. PMID 18411273 DOI: 10.1074/jbc.M708947200  0.48
2008 Gorman PM, Kim S, Guo M, Melnyk RA, McLaurin J, Fraser PE, Bowie JU, Chakrabartty A. Dimerization of the transmembrane domain of amyloid precursor proteins and familial Alzheimer's disease mutants. Bmc Neuroscience. 9: 17. PMID 18234110 DOI: 10.1186/1471-2202-9-17  1
2007 Plotkowski ML, Kim S, Phillips ML, Partridge AW, Deber CM, Bowie JU. Transmembrane domain of myelin protein zero can form dimers: Possible implications for myelin construction Biochemistry. 46: 12164-12173. PMID 17915947 DOI: 10.1021/bi701066h  1
2007 Barwe SP, Kim S, Rajasekaran SA, Bowie JU, Rajasekaran AK. Janus Model of The Na,K-ATPase β-Subunit Transmembrane Domain: Distinct Faces Mediate α/β Assembly and β-β Homo-oligomerization Journal of Molecular Biology. 365: 706-714. PMID 17078968 DOI: 10.1016/j.jmb.2006.10.029  1
2006 Oberai A, Ihm Y, Kim S, Bowie JU. A limited universe of membrane protein families and folds Protein Science. 15: 1723-1734. PMID 16815920 DOI: 10.1110/ps.062109706  1
2006 Go MY, Kim S, Partridge AW, Melnyk RA, Rath A, Deber CM, Mogridge J. Self-association of the transmembrane domain of an anthrax toxin receptor. Journal of Molecular Biology. 360: 145-56. PMID 16756998 DOI: 10.1016/j.jmb.2006.04.072  1
2005 Kim S, Jeon TJ, Oberai A, Yang D, Schmidt JJ, Bowie JU. Transmembrane glycine zippers: Physiological and pathological roles in membrane proteins Proceedings of the National Academy of Sciences of the United States of America. 102: 14278-14283. PMID 16179394 DOI: 10.1073/pnas.0501234102  1
2005 Edwards MD, Li Y, Kim S, Miller S, Bartlett W, Black S, Dennison S, Iscla I, Blount P, Bowie JU, Booth IR. Pivotal role of the glycine-rich TM3 helix in gating the MscS mechanosensitive channel Nature Structural and Molecular Biology. 12: 113-119. PMID 15665866 DOI: 10.1038/nsmb895  1
2005 Partridge AW, Liu S, Kim S, Bowie JU, Ginsberg MH. Transmembrane domain helix packing stabilizes integrin αIIbβ3 in the low affinity state Journal of Biological Chemistry. 280: 7294-7300. PMID 15591321 DOI: 10.1074/jbc.M412701200  1
2004 Kim S, Chamberlain AK, Bowie JU. A model of the closed form of the nicotinic acetylcholine receptor M2 channel pore Biophysical Journal. 87: 792-799. PMID 15298888 DOI: 10.1529/biophysj.103.039396  1
2004 Kim S, Cross TA. 2D solid state NMR spectral simulation of 310, α, and π-helices Journal of Magnetic Resonance. 168: 187-193. PMID 15140426 DOI: 10.1016/j.jmr.2004.02.009  1
2004 Chamberlain AK, Lee Y, Kim S, Bowie JU. Snorkeling preferences foster an amino acid composition bias in transmembrane helices Journal of Molecular Biology. 339: 471-479. PMID 15136048 DOI: 10.1016/j.jmb.2004.03.072  1
2004 Kim S, Chamberlain AK, Bowie JU. Membrane channel structure of Helicobacter pylori vacuolating toxin: Role of multiple GXXXG motifs in cylindrical channels Proceedings of the National Academy of Sciences of the United States of America. 101: 5988-5991. PMID 15067113 DOI: 10.1073/pnas.0308694101  1
2004 Melnyk RA, Kim S, Curran AR, Engelman DM, Bowie JU, Deber CM. The affinity of GXXXG motifs in transmembrane helix-helix interactions is modulated by long-range communication. The Journal of Biological Chemistry. 279: 16591-7. PMID 14766751 DOI: 10.1074/jbc.M313936200  1
2003 Kim S, Chamberlain AK, Bowie JU. A simple method for modeling transmembrane helix oligomers Journal of Molecular Biology. 329: 831-840. PMID 12787681 DOI: 10.1016/S0022-2836(03)00521-7  1
2002 Nishimura K, Kim S, Zhang L, Cross TA. The closed state of a H+ channel helical bundle combining precise orientational and distance restraints from solid state NMR. Biochemistry. 41: 13170-7. PMID 12403618 DOI: 10.1021/bi0262799  1
2002 Kim S, Cross TA. Uniformity, ideality, and hydrogen bonds in transmembrane alpha-helices. Biophysical Journal. 83: 2084-95. PMID 12324426 DOI: 10.1016/S0006-3495(02)73969-6  1
2001 Wang J, Kim S, Kovacs F, Cross TA. Structure of the transmembrane region of the M2 protein H(+) channel. Protein Science : a Publication of the Protein Society. 10: 2241-50. PMID 11604531 DOI: 10.1110/ps.17901  1
2001 Kim S, Quine JR, Cross TA. Complete cross-validation and R-factor calculation of a solid-state NMR derived structure. Journal of the American Chemical Society. 123: 7292-8. PMID 11472156 DOI: 10.1021/ja003380x  0.4
2000 Wang J, Denny J, Tian C, Kim S, Mo Y, Kovacs F, Song Z, Nishimura K, Gan Z, Fu R, Quine JR, Cross TA. Imaging membrane protein helical wheels. Journal of Magnetic Resonance (San Diego, Calif. : 1997). 144: 162-7. PMID 10783287 DOI: 10.1006/jmre.2000.2037  1
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