| Year |
Citation |
Score |
| 2023 |
Coñuecar R, Asela I, Rivera M, Galaz-Davison P, González-Higueras J, Hamilton GL, Engelberger F, Ramírez-Sarmiento CA, Babul J, Sanabria H, Medina E. DNA facilitates heterodimerization between human transcription factors FoxP1 and FoxP2 by increasing their conformational flexibility. Iscience. 26: 107228. PMID 37485372 DOI: 10.1016/j.isci.2023.107228 |
0.669 |
|
| 2023 |
Villalobos P, Carvajal AI, Castro-Fernández V, Babul J, Ramírez-Sarmiento CA, Medina E. Unraveling the folding and dimerization properties of the human FoxP subfamily of transcription factors. Febs Letters. PMID 37199668 DOI: 10.1002/1873-3468.14665 |
0.792 |
|
| 2021 |
Villalobos P, Ramírez-Sarmiento CA, Babul J, Medina E. Human FoxP Transcription Factors as Tractable Models of the Evolution and Functional Outcomes of Three-Dimensional Domain Swapping. International Journal of Molecular Sciences. 22. PMID 34638644 DOI: 10.3390/ijms221910296 |
0.787 |
|
| 2021 |
Bustamante A, Rivera R, Floor M, Babul J, Baez M. Single-molecule optical tweezers reveals folding steps of the domain swapping mechanism of a protein. Biophysical Journal. PMID 34555362 DOI: 10.1016/j.bpj.2021.09.026 |
0.706 |
|
| 2020 |
Medina E, Villalobos P, Coñuecar R, Ramírez-Sarmiento CA, Babul J. Author Correction: The protonation state of an evolutionarily conserved histidine modulates domain swapping stability of FoxP1. Scientific Reports. 10: 15986. PMID 32973174 DOI: 10.1038/s41598-020-70337-y |
0.781 |
|
| 2020 |
Medina E, Villalobos P, Hamilton GL, Komives EA, Sanabria H, Ramírez-Sarmiento CA, Babul J. Intrinsically disordered regions of the DNA-binding domain of human FoxP1 facilitate domain swapping. Journal of Molecular Biology. PMID 32735805 DOI: 10.1016/J.Jmb.2020.07.017 |
0.803 |
|
| 2020 |
Cea PA, Araya G, Vallejos G, Recabarren R, Alzate-Morales J, Babul J, Guixé V, Castro-Fernandez V. Characterization of hydroxymethylpyrimidine phosphate kinase from mesophilic and thermophilic bacteria and structural insights into their differential thermal stability. Archives of Biochemistry and Biophysics. 688: 108389. PMID 32387178 DOI: 10.1016/J.Abb.2020.108389 |
0.795 |
|
| 2019 |
Murillo-López J, Zinovjev K, Pereira H, Caniuguir A, Garratt R, Babul J, Recabarren R, Alzate-Morales J, Caballero J, Tuñón I, Cabrera R. Studying the phosphoryl transfer mechanism of the phosphofructokinase-2: from X-ray structure to quantum mechanics/molecular mechanics simulations. Chemical Science. 10: 2882-2892. PMID 30996866 DOI: 10.1039/C9Sc00094A |
0.662 |
|
| 2019 |
Medina E, Villalobos P, Coñuecar R, Ramírez-Sarmiento CA, Babul J. The protonation state of an evolutionarily conserved histidine modulates domainswapping stability of FoxP1. Scientific Reports. 9: 5441. PMID 30931977 DOI: 10.1038/S41598-019-41819-5 |
0.81 |
|
| 2017 |
Carvajal AI, Vallejos G, Komives EA, Castro-Fernández V, Leonardo DA, Garratt RC, Ramírez-Sarmiento CA, Babul J. Unusual dimerization of a BcCsp mutant leads to reduced conformational dynamics. The Febs Journal. PMID 28457014 DOI: 10.7490/F1000Research.1113949.1 |
0.811 |
|
| 2017 |
Medina E, Reyes J, Villalobos P, Komives EA, Babul J, Ramirez-Sarmiento CA. Biophysical and Evolutionary Aspects of Domain Swapping in the Forkhead Domain of Human FoxP Proteins Biophysical Journal. 112: 168a. DOI: 10.1016/J.Bpj.2016.11.924 |
0.801 |
|
| 2016 |
Paredes AJ, Naranjo-Palma T, Alfaro-Valdés HM, Barriga A, Babul J, Wilson CA. New visible and selective DNA staining method in gels with tetrazolium salts. Analytical Biochemistry. PMID 27840054 DOI: 10.1016/J.Ab.2016.11.004 |
0.553 |
|
| 2016 |
Villalobos P, Soto F, Baez M, Babul J. Regulatory network of the allosteric ATP inhibition of E. coli phosphofructokinase-2 studied by hybrid dimers. Biochimie. PMID 27591700 DOI: 10.1016/J.Biochi.2016.08.013 |
0.822 |
|
| 2016 |
Medina E, Córdova C, Villalobos P, Reyes J, Komives EA, Ramírez-Sarmiento CA, Babul J. Three-Dimensional Domain Swapping Changes the Folding Mechanism of the Forkhead Domain of FoxP1. Biophysical Journal. 110: 2349-2360. PMID 27276253 DOI: 10.1016/J.Bpj.2016.04.043 |
0.822 |
|
| 2016 |
Medina E, Córdova C, Reyes J, Ramírez-Sarmiento CA, Babul J. Increase in Domain Swapping of the DNA-Binding Domain of Human FoxP1 is Related to a Decrease in Monomer Folding Stability Biophysical Journal. 110: 389a. DOI: 10.1016/J.Bpj.2015.11.2102 |
0.745 |
|
| 2015 |
Ramírez-Sarmiento CA, Baez M, Zamora RA, Balasubramaniam D, Babul J, Komives EA, Guixé V. The folding unit of phosphofructokinase-2 as defined by the biophysical properties of a monomeric mutant. Biophysical Journal. 108: 2350-61. PMID 25954892 DOI: 10.1016/J.Bpj.2015.04.001 |
0.813 |
|
| 2015 |
Quiroga-Roger D, Babul J, Guixé V. Role of monovalent and divalent metal cations in human ribokinase catalysis and regulation. Biometals : An International Journal On the Role of Metal Ions in Biology, Biochemistry, and Medicine. 28: 401-13. PMID 25749547 DOI: 10.1007/S10534-015-9844-X |
0.817 |
|
| 2015 |
Quiroga-Roger D, Babul J, Guixé V. Role of monovalent and divalent metal cations in human ribokinase catalysis and regulation Biometals. DOI: 10.1007/s10534-015-9844-x |
0.755 |
|
| 2013 |
Baez M, Cabrera R, Pereira HM, Blanco A, Villalobos P, Ramírez-Sarmiento CA, Caniuguir A, Guixé V, Garratt RC, Babul J. A Ribokinase family conserved monovalent cation binding site enhances the MgATP-induced inhibition in E. coli phosphofructokinase-2 Biophysical Journal. 105: 185-193. PMID 23823238 DOI: 10.1016/J.Bpj.2013.05.028 |
0.776 |
|
| 2013 |
Ramírez-Sarmiento CA, Baez M, Wilson CA, Babul J, Komives EA, Guixé V. Observation of solvent penetration during cold denaturation of E. coli phosphofructokinase-2. Biophysical Journal. 104: 2254-63. PMID 23708365 DOI: 10.1016/J.Bpj.2013.04.024 |
0.789 |
|
| 2012 |
Baez M, Wilson CA, Ramírez-Sarmiento CA, Guixé V, Babul J. Expanded monomeric intermediate upon cold and heat unfolding of phosphofructokinase-2 from Escherichia coli. Biophysical Journal. 103: 2187-94. PMID 23200052 DOI: 10.1016/J.Bpj.2012.09.043 |
0.79 |
|
| 2011 |
Baez M, Wilson CA, Babul J. Folding kinetic pathway of phosphofructokinase-2 from Escherichia coli: a homodimeric enzyme with a complex domain organization. Febs Letters. 585: 2158-64. PMID 21627967 DOI: 10.1016/J.Febslet.2011.05.041 |
0.795 |
|
| 2011 |
Cabrera R, Baez M, Pereira HM, Caniuguir A, Garratt RC, Babul J. The crystal complex of phosphofructokinase-2 of Escherichia coli with fructose-6-phosphate: kinetic and structural analysis of the allosteric ATP inhibition. The Journal of Biological Chemistry. 286: 5774-83. PMID 21147773 DOI: 10.1074/Jbc.M110.163162 |
0.807 |
|
| 2011 |
Rivas-Pardo JA, Caniuguir A, Wilson CA, Babul J, Guixé V. Divalent metal cation requirements of phosphofructokinase-2 from E. coli. Evidence for a high affinity binding site for Mn2+. Archives of Biochemistry and Biophysics. 505: 60-6. PMID 20887711 DOI: 10.1016/J.Abb.2010.09.020 |
0.809 |
|
| 2010 |
Cabrera R, Babul J, Guixé V. Ribokinase family evolution and the role of conserved residues at the active site of the PfkB subfamily representative, Pfk-2 from Escherichia coli. Archives of Biochemistry and Biophysics. 502: 23-30. PMID 20599671 DOI: 10.1016/J.Abb.2010.06.024 |
0.789 |
|
| 2009 |
Baez M, Babul J. Reversible unfolding of dimeric phosphofructokinase-2 from Escherichia coli reveals a dominant role of inter-subunit contacts for stability. Febs Letters. 583: 2054-60. PMID 19465020 DOI: 10.1016/J.Febslet.2009.05.034 |
0.714 |
|
| 2008 |
Cabrera R, Ambrosio ALB, Garratt RC, Guixé V, Babul J. Crystallographic Structure of Phosphofructokinase-2 from Escherichia coli in Complex with Two ATP Molecules. Implications for Substrate Inhibition Journal of Molecular Biology. 383: 588-602. PMID 18762190 DOI: 10.1016/J.Jmb.2008.08.029 |
0.829 |
|
| 2008 |
Baez M, Merino F, Astorga G, Babul J. Uncoupling the MgATP-induced inhibition and aggregation of Escherichia coli phosphofructokinase-2 by C-terminal mutations. Febs Letters. 582: 1907-12. PMID 18501195 DOI: 10.1016/J.Febslet.2008.05.011 |
0.709 |
|
| 2007 |
Baez M, Cabrera R, Guixé V, Babul J. Unfolding pathway of the dimeric and tetrameric forms of phosphofructokinase-2 from Escherichia coli Biochemistry. 46: 6141-6148. PMID 17469854 DOI: 10.1021/Bi7002247 |
0.813 |
|
| 2006 |
Cabrera R, Caniuguir A, Ambrosio ALB, Guixé V, Garratt RC, Babul J. Crystallization and preliminary crystallographic analysis of the tetrameric form of phosphofructokinase-2 from Escherichia coli, a member of the ribokinase family Acta Crystallographica Section F: Structural Biology and Crystallization Communications. 62: 935-937. PMID 16946484 DOI: 10.1107/S1744309106032246 |
0.788 |
|
| 2005 |
Caniuguir A, Cabrera R, Báez M, Vásquez CC, Babul J, Guixé V. Role of Cys-295 on subunit interactions and allosteric regulation of phosphofructokinase-2 from Escherichia coli Febs Letters. 579: 2313-2318. PMID 15848164 DOI: 10.1016/J.Febslet.2005.02.078 |
0.818 |
|
| 2003 |
Baez M, RodrÃguez PH, Babul J, Guixé V. Structural and functional roles of Cys-238 and Cys-295 in Escherichia coli phosphofructokinase-2. The Biochemical Journal. 376: 277-83. PMID 12927023 DOI: 10.1042/Bj20030795 |
0.759 |
|
| 2003 |
Cabrera R, Fischer H, Trapani S, Craievich AF, Garratt RC, Guixé V, Babul J. Domain motions and quaternary packing of phosphofructokinase-2 from Escherichia coli studied by small angle x-ray scattering and homology modeling Journal of Biological Chemistry. 278: 12913-12919. PMID 12527754 DOI: 10.1074/Jbc.M212137200 |
0.821 |
|
| 2002 |
Cabrera R, Guixé V, Alfaro J, RodrÃguez PH, Babul J. Ligand-dependent structural changes and limited proteolysis of Escherichia coli phosphofructokinase-2. Archives of Biochemistry and Biophysics. 406: 289-95. PMID 12361717 DOI: 10.1016/S0003-9861(02)00435-6 |
0.709 |
|
| 2002 |
Cabrera RM, Fischer H, Trapani S, Craievich AF, Guixe V, Babul J, Garratt RC. Changes in the state of aggregation of the Pfk-2 enzyme induced by MgATP Acta Crystallographica Section a Foundations of Crystallography. 58: c320-c320. DOI: 10.1107/S0108767302097799 |
0.793 |
|
| 1998 |
Guixé V, RodrÃguez PH, Babul J. Ligand-induced conformational transitions in Escherichia coli phosphofructokinase 2: evidence for an allosteric site for MgATP2-. Biochemistry. 37: 13269-75. PMID 9748334 DOI: 10.1021/Bi980576P |
0.46 |
|
| 1997 |
Torres JC, Guixé V, Babul J. A mutant phosphofructokinase produces a futile cycle during gluconeogenesis in Escherichia coli. The Biochemical Journal. 327: 675-84. PMID 9581542 DOI: 10.1042/Bj3270675 |
0.764 |
|
| 1995 |
Torres JC, Guixé V, Babul J. A new method of assessing rates of the futile cycle during glycolytic and gluconeogenic metabolism Archives of Biochemistry and Biophysics. 321: 517-525. PMID 7646079 DOI: 10.1006/Abbi.1995.1425 |
0.76 |
|
| 1993 |
Babul J, Clifton D, Kretschmer M, Fraenkel DG. Glucose metabolism in Escherichia coli and the effect of increased amount of aldolase. Biochemistry. 32: 4685-92. PMID 8485146 DOI: 10.1021/Bi00068A029 |
0.338 |
|
| 1991 |
Torres JC, Babul J. An in vitro model showing different rates of substrate cycle for phosphofructokinases of Escherichia coli with different kinetic properties. European Journal of Biochemistry / Febs. 200: 471-6. PMID 1653703 DOI: 10.1111/J.1432-1033.1991.Tb16206.X |
0.376 |
|
| 1988 |
Babul J, Fraenkel DG. Phosphate modification of fructose-1,6-bisphosphate aldolase in Escherichia coli. Biochemical and Biophysical Research Communications. 151: 1033-8. PMID 3281666 DOI: 10.1016/S0006-291X(88)80469-8 |
0.319 |
|
| 1988 |
Guixé V, Babul J. Influence of ligands on the aggregation of the normal and mutant forms of phosphofructokinase 2 of Escherichia coli Archives of Biochemistry and Biophysics. 264: 519-524. PMID 2969698 DOI: 10.1016/0003-9861(88)90317-7 |
0.818 |
|
| 1986 |
Sedivy JM, Babul J, Fraenkel DG. AMP-insensitive fructose bisphosphatase in Escherichia coli and its consequences. Proceedings of the National Academy of Sciences of the United States of America. 83: 1656-9. PMID 3006063 DOI: 10.1073/Pnas.83.6.1656 |
0.416 |
|
| 1985 |
Guixé V, Babul J. Effect of ATP on phosphofructokinase-2 from Escherichia coli. A mutant enzyme altered in the allosteric site for MgATP. The Journal of Biological Chemistry. 260: 11001-5. PMID 3161887 |
0.818 |
|
| 1985 |
Guixe V, Babul J. A phosphofructokinase mutant of Escherichia coli altered in its allosteric properties impairs gluconeogenic growth. Archivos De Biología Y Medicina Experimentales. 18: 301-7. PMID 2944484 |
0.826 |
|
| 1984 |
Campos G, Guixé V, Babul J. Kinetic mechanism of phosphofructokinase-2 from Escherichia coli. A mutant enzyme with a different mechanism. The Journal of Biological Chemistry. 259: 6147-52. PMID 6233271 |
0.807 |
|
| 1983 |
Babul J, Guixé V. Fructose bisphosphatase from Escherichia coli. Purification and characterization Archives of Biochemistry and Biophysics. 225: 944-949. PMID 6312898 DOI: 10.1016/0003-9861(83)90109-1 |
0.815 |
|
| 1982 |
Daldal F, Babul J, Guixé V, Fraenkel DG. An alteration in phosphofructokinase 2 of Escherichia coli which impairs gluconeogenic growth and improves growth on sugars. European Journal of Biochemistry / Febs. 126: 373-9. PMID 6215246 DOI: 10.1111/J.1432-1033.1982.Tb06790.X |
0.772 |
|
| 1978 |
Babul J, Nakagawa A, Stellwagen E. An examination of the involvement of proline peptide isomerization in protein folding. Journal of Molecular Biology. 126: 117-21. PMID 216809 DOI: 10.1016/0022-2836(78)90284-X |
0.321 |
|
| 1977 |
Babul J, Robinson JP, Fraenkel DG. Are the aerobic and anaerobic phosphofructokinases of Escherichia coli different? European Journal of Biochemistry / Febs. 74: 533-7. PMID 140050 DOI: 10.1111/J.1432-1033.1977.Tb11421.X |
0.378 |
|
| 1975 |
Stellwagen E, Babul J. Stabilization of the globular structure of ferricytochrome c by chloride in acidic solvents. Biochemistry. 14: 5135-40. PMID 41 DOI: 10.1021/Bi00694A018 |
0.324 |
|
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