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Zhihua Du - Publications

Affiliations: 
Chemistry Southern Illinois University at Carbondale, Carbondale, IL 
Area:
Biochemistry
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Huang X, Du Z. Elaborated pseudoknots that stimulate -1 programmed ribosomal frameshifting or stop codon readthrough in RNA viruses. Journal of Biomolecular Structure & Dynamics. 1-13. PMID 38095458 DOI: 10.1080/07391102.2023.2292296  0.382
2023 Zhou X, Du Z, Huang X. A potential long-range RNA-RNA interaction in the HIV-1 RNA. Journal of Biomolecular Structure & Dynamics. 1-9. PMID 36863767 DOI: 10.1080/07391102.2023.2184639  0.342
2020 Zhu J, Zhou X, Huang X, Du Z. Crystal structure of a 123 amino acids dimerization domain of Drosophila Caprin. Proteins. PMID 32725918 DOI: 10.1002/Prot.25987  0.45
2020 Zhu J, Zhou X, Huang X, Du Z. Bacterial expression, purification, and initial characterization of a full-length Cas13b protein from Porphyromonas gingivalis. Protein Expression and Purification. 105588. PMID 32006655 DOI: 10.1016/J.Pep.2020.105588  0.412
2018 Wu Y, Zhu J, Huang X, Zhou X, Du Z. Crystal structure of a dimerization domain of human Caprin-2: similar overall dimeric fold but different molecular surface properties to that of human Caprin-1. Journal of Biomolecular Structure & Dynamics. 1-23. PMID 30304999 DOI: 10.1080/07391102.2018.1532817  0.435
2016 Wu Y, Zhu J, Huang X, Du Z. Crystal structure of a dimerization domain of human Caprin-1: insights into the assembly of an evolutionarily conserved ribonucleoprotein complex consisting of Caprin-1, FMRP and G3BP1. Acta Crystallographica. Section D, Structural Biology. 72: 718-727. PMID 27303792 DOI: 10.1107/S2059798316004903  0.317
2016 Du Z, Lin W, Qiu P, Liu X, Guo L, Wu K, Zhang S, Wu Z. Complete sequence of a double-stranded RNA from the phytopathogenic fungus Erysiphe cichoracearum that might represent a novel endornavirus. Archives of Virology. PMID 27255746 DOI: 10.1007/s00705-016-2911-y  0.348
2015 Wu Y, Zhu J, Huang X, Du Z. Bacterial expression and preliminary crystallographic studies of a 149-residue fragment of human Caprin-1. Acta Crystallographica. Section F, Structural Biology Communications. 71: 324-9. PMID 25760709 DOI: 10.1107/S2053230X15002642  0.424
2015 Shang J, Huang X, Du Z. The FP domains of PI31 and Fbxo7 have the same protein fold but very different modes of protein-protein interaction. Journal of Biomolecular Structure & Dynamics. 33: 1528-38. PMID 25266262 DOI: 10.1080/07391102.2014.963675  0.393
2015 Wang G, Yang Y, Huang X, Du Z. Possible involvement of coaxially stacked double pseudoknots in the regulation of -1 programmed ribosomal frameshifting in RNA viruses. Journal of Biomolecular Structure & Dynamics. 33: 1547-57. PMID 25204560 DOI: 10.1080/07391102.2014.956149  0.392
2014 Yang Y, Wang G, Huang X, Du Z. Expression, purification and crystallization of the SKICH domain of human TAX1BP1. Acta Crystallographica. Section F, Structural Biology Communications. 70: 619-23. PMID 24817723 DOI: 10.1107/S2053230X14006396  0.394
2014 Huang X, Yang Y, Wang G, Cheng Q, Du Z. Highly conserved RNA pseudoknots at the Gag-Pol junction of HIV-1 suggest a novel mechanism of -1 ribosomal frameshifting. Rna (New York, N.Y.). 20: 587-93. PMID 24671765 DOI: 10.1261/Rna.042457.113  0.445
2014 Shang J, Wang G, Yang Y, Huang X, Du Z. Structure of the FP domain of Fbxo7 reveals a novel mode of protein-protein interaction. Acta Crystallographica. Section D, Biological Crystallography. 70: 155-64. PMID 24419388 DOI: 10.1107/S1399004713025820  0.387
2013 Huang X, Cheng Q, Du Z. A genome-wide analysis of RNA pseudoknots that stimulate efficient -1 ribosomal frameshifting or readthrough in animal viruses. Biomed Research International. 2013: 984028. PMID 24298557 DOI: 10.1155/2013/984028  0.38
2013 Shang J, Wang G, Yang Y, Huang X, Du Z. Expression, purification and crystallization of the FP domain of the human F-box protein Fbxo7. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 69: 1097-9. PMID 24100556 DOI: 10.1107/S1744309113023154  0.374
2013 Huang X, Cheng Q, Du Z. Possible utilization of -1 Ribosomal frame shifting in the expression of a human SEMA6C isoform. Bioinformation. 9: 736-8. PMID 23976831 DOI: 10.6026/97320630009736  0.351
2013 Huang X, Wang G, Wu Y, Du Z. The structure of full-length human CTNNBL1 reveals a distinct member of the armadillo-repeat protein family. Acta Crystallographica. Section D, Biological Crystallography. 69: 1598-608. PMID 23897482 DOI: 10.1107/S0907444913011360  0.428
2013 Huang X, Du Z, Cheng J, Cheng Q. PKscan: a program to identify H-type RNA pseudoknots in any RNA sequence with unlimited length. Bioinformation. 9: 440-2. PMID 23847396 DOI: 10.6026/97320630009440  0.375
2008 Du Z, Fenn S, Tjhen R, James TL. Structure of a construct of a human poly(C)-binding protein containing the first and second KH domains reveals insights into its regulatory mechanisms. The Journal of Biological Chemistry. 283: 28757-66. PMID 18701464 DOI: 10.1074/Jbc.M803046200  0.462
2008 Du Z, Lee JK, Tjhen R, Stroud RM, James TL. Structural and biochemical insights into the dicing mechanism of mouse Dicer: a conserved lysine is critical for dsRNA cleavage. Proceedings of the National Academy of Sciences of the United States of America. 105: 2391-6. PMID 18268334 DOI: 10.1073/Pnas.0711506105  0.459
2007 Du Z, Lee JK, Fenn S, Tjhen R, Stroud RM, James TL. X-ray crystallographic and NMR studies of protein-protein and protein-nucleic acid interactions involving the KH domains from human poly(C)-binding protein-2. Rna (New York, N.Y.). 13: 1043-51. PMID 17526645 DOI: 10.1261/Rna.410107  0.49
2007 Fenn S, Du Z, Lee JK, Tjhen R, Stroud RM, James TL. Crystal structure of the third KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomeric DNA at 1.6 A resolution. Nucleic Acids Research. 35: 2651-60. PMID 17426136 DOI: 10.1093/Nar/Gkm139  0.449
2006 Ulyanov NB, Mujeeb A, Du Z, Tonelli M, Parslow TG, James TL. NMR structure of the full-length linear dimer of stem-loop-1 RNA in the HIV-1 dimer initiation site. The Journal of Biological Chemistry. 281: 16168-77. PMID 16603544 DOI: 10.1074/Jbc.M601711200  0.477
2005 Du Z, Lee JK, Tjhen R, Li S, Pan H, Stroud RM, James TL. Crystal structure of the first KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomeric DNA at 1.7 A. The Journal of Biological Chemistry. 280: 38823-30. PMID 16186123 DOI: 10.1074/Jbc.M508183200  0.413
2004 Du Z, Yu J, Ulyanov NB, Andino R, James TL. Solution structure of a consensus stem-loop D RNA domain that plays important roles in regulating translation and replication in enteroviruses and rhinoviruses. Biochemistry. 43: 11959-72. PMID 15379536 DOI: 10.1021/Bi048973P  0.483
2004 Du Z, Yu J, Chen Y, Andino R, James TL. Specific recognition of the C-rich strand of human telomeric DNA and the RNA template of human telomerase by the first KH domain of human poly(C)-binding protein-2. The Journal of Biological Chemistry. 279: 48126-34. PMID 15331611 DOI: 10.1074/Jbc.M405371200  0.453
2004 Du Z, Ulyanov NB, Yu J, Andino R, James TL. NMR structures of loop B RNAs from the stem-loop IV domain of the enterovirus internal ribosome entry site: a single C to U substitution drastically changes the shape and flexibility of RNA. Biochemistry. 43: 5757-71. PMID 15134450 DOI: 10.1021/Bi0363228  0.498
2003 Du Z, Yu J, Andino R, James TL. Extending the family of UNCG-like tetraloop motifs: NMR structure of a CACG tetraloop from coxsackievirus B3. Biochemistry. 42: 4373-83. PMID 12693932 DOI: 10.1021/Bi027314E  0.489
2003 Beniaminov AD, Ulyanov NB, Samokhin AB, Ivanov VI, Du Z, Minyat EE. The role of structural elements in dimerization of RNA fragments in avian retroviruses Molecular Biology. 37: 446-455. DOI: 10.1023/A:1024251713903  0.45
2002 Wang Y, Wills NM, Du Z, Rangan A, Atkins JF, Gesteland RF, Hoffman DW. Comparative studies of frameshifting and nonframeshifting RNA pseudoknots: a mutational and NMR investigation of pseudoknots derived from the bacteriophage T2 gene 32 mRNA and the retroviral gag-pro frameshift site. Rna (New York, N.Y.). 8: 981-96. PMID 12212853 DOI: 10.1017/S1355838202024044  0.378
2002 Du Z, Lind KE, James TL. Structure of TAR RNA complexed with a Tat-TAR interaction nanomolar inhibitor that was identified by computational screening. Chemistry & Biology. 9: 707-12. PMID 12079782 DOI: 10.1016/S1074-5521(02)00151-5  0.4
2002 Lind KE, Du Z, Fujinaga K, Peterlin BM, James TL. Structure-based computational database screening, in vitro assay, and NMR assessment of compounds that target TAR RNA. Chemistry & Biology. 9: 185-93. PMID 11880033 DOI: 10.1016/S1074-5521(02)00106-0  0.398
1999 Holland JA, Hansen MR, Du Z, Hoffman DW. An examination of coaxial stacking of helical stems in a pseudoknot motif: The gene 32 messenger RNA pseudoknot of bacteriophage T2 Rna. 5: 257-271. PMID 10024177 DOI: 10.1017/S1355838299981360  0.419
1997 Du Z, Holland JA, Hansen MR, Giedroc DP, Hoffman DW. Base-pairings within the RNA pseudoknot associated with the simian retrovirus-1 gag-pro frameshift site Journal of Molecular Biology. 270: 464-470. PMID 9237911 DOI: 10.1006/Jmbi.1997.1127  0.457
1997 Du Z, Hoffman DW. An NMR and Mutational Study of the Pseudoknot Within the Gene 32 mRNA of Bacteriophage T2: Insights into a Family of Structurally Related RNA Pseudoknots Nucleic Acids Research. 25: 1130-1135. PMID 9092620 DOI: 10.1093/Nar/25.6.1130  0.461
1997 Hoffman DW, Du Z, Holland JA, Hansen MR, Wang Y, Giedroc DP. Pseudoknot Structures in Retroviral and Bacteriophage Messenger RNA: a Family of Structurally Related RNA Pseudoknots Microscopy and Microanalysis. 3: 95-96. DOI: 10.1017/S1431927600007364  0.418
1996 Du Z, Giedroc DP, Hoffman DW. Structure of the autoregulatory pseudoknot within the gene 32 messenger RNA of bacteriophages T2 and T6: A model for a possible family of structurally related RNA pseudoknots Biochemistry. 35: 4187-4198. PMID 8672455 DOI: 10.1021/Bi9527350  0.457
1996 Qiu H, Kaluarachchi K, Du Z, Hoffman DW, Giedroc DP. Thermodynamics of folding of the RNA pseudoknot of the T4 gene 32 autoregulatory messenger RNA Biochemistry. 35: 4176-4186. PMID 8672454 DOI: 10.1021/Bi9527348  0.359
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