Naama Barkai - Publications

Weizmann Institute of Science, Rehovot, Israel 
Molecular Biology, Biochemistry

132 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Lupo O, Krieger G, Jonas F, Barkai N. Accumulation of cis- and trans-regulatory variations is associated with phenotypic divergence of a complex trait between yeast species. G3 (Bethesda, Md.). 11. PMID 33609368 DOI: 10.1093/g3journal/jkab016  0.56
2021 Frenkel N, Jonas F, Carmi M, Yaakov G, Barkai N. Rtt109 slows replication speed by histone N-terminal acetylation. Genome Research. 31: 426-435. PMID 33563717 DOI: 10.1101/gr.266510.120  0.56
2020 Barkai N, Shilo BZ. Reconstituting tissue patterning. Science (New York, N.Y.). 370: 292-293. PMID 33060349 DOI: 10.1126/science.abe4217  0.72
2020 Rosenthal M, Metzl-Raz E, Bürgi J, Yifrach E, Drwesh L, Fadel A, Peleg Y, Rapaport D, Wilmanns M, Barkai N, Schuldiner M, Zalckvar E. Uncovering targeting priority to yeast peroxisomes using an in-cell competition assay. Proceedings of the National Academy of Sciences of the United States of America. PMID 32817524 DOI: 10.1073/pnas.1920078117  0.56
2020 Metzl-Raz E, Kafri M, Yaakov G, Barkai N. Gene Transcription as a Limiting Factor in Protein Production and Cell Growth. G3 (Bethesda, Md.). PMID 32694199 DOI: 10.1534/g3.120.401303  0.56
2020 Brodsky S, Jana T, Mittelman K, Chapal M, Kumar DK, Carmi M, Barkai N. Intrinsically Disordered Regions Direct Transcription Factor In Vivo Binding Specificity. Molecular Cell. PMID 32553192 DOI: 10.1016/J.Molcel.2020.05.032  0.56
2020 Bar-Ziv R, Brodsky S, Chapal M, Barkai N. Transcription Factor Binding to Replicated DNA. Cell Reports. 30: 3989-3995.e4. PMID 32209462 DOI: 10.1016/J.Celrep.2020.02.114  0.72
2020 Rahimi N, Carmon S, Averbukh I, Khajouei F, Sinha S, Schejter ED, Barkai N, Shilo BZ. Global shape of Toll activation is determined by enhancer properties. Proceedings of the National Academy of Sciences of the United States of America. PMID 31900360 DOI: 10.1073/Pnas.1918268117  0.72
2019 Chapal M, Mintzer S, Brodsky S, Carmi M, Barkai N. Resolving noise-control conflict by gene duplication. Plos Biology. 17: e3000289. PMID 31756183 DOI: 10.1371/Journal.Pbio.3000289  0.36
2019 Rahimi N, Averbukh I, Carmon S, Schejter ED, Barkai N, Shilo BZ. Dynamics of Spaetzle morphogen shuttling in the embryo shapes gastrulation patterning. Development (Cambridge, England). 146. PMID 31719046 DOI: 10.1242/Dev.181487  0.72
2018 Jonas F, Soifer I, Barkai N. A Visual Framework for Classifying Determinants of Cell Size. Cell Reports. 25: 3519-3529.e2. PMID 30566874 DOI: 10.1016/J.Celrep.2018.11.087  1
2018 Averbukh I, Lai SL, Doe CQ, Barkai N. A repressor-decay timer for robust temporal patterning in embryonic neuroblast lineages. Elife. 7. PMID 30526852 DOI: 10.7554/Elife.38631  0.44
2018 Voichek Y, Mittelman K, Gordon Y, Bar-Ziv R, Lifshitz Smit D, Shenhav R, Barkai N. Epigenetic Control of Expression Homeostasis during Replication Is Stabilized by the Replication Checkpoint. Molecular Cell. 70: 1121-1133.e9. PMID 29910110 DOI: 10.1016/J.Molcel.2018.05.015  0.72
2018 Averbukh I, Lai S, Doe CQ, Barkai N. Author response: A repressor-decay timer for robust temporal patterning in embryonic Drosophila neuroblast lineages Elife. DOI: 10.7554/Elife.38631.021  0.44
2017 Gurvich Y, Leshkowitz D, Barkai N. Dual role of starvation signaling in promoting growth and recovery. Plos Biology. 15: e2002039. PMID 29236696 DOI: 10.1371/Journal.Pbio.2002039  0.56
2017 Cao J, Packer J, Waterston R, Trapnell C, Shendure J, Rajaram S, Wu LF, Altschuler SJ, Liang J, O'Brien LE, Eizenberg-Magar I, Rimer J, Friedman N, Metzl-Raz E, Kafri M, ... ... Barkai N, et al. Principles of Systems Biology, No. 21 : Editorial Cell Systems. 5: 158-160. PMID 28957648 DOI: 10.1016/J.Cels.2017.09.005  1
2017 Metzl-Raz E, Kafri M, Yaakov G, Soifer I, Gurvich Y, Barkai N. Principles of cellular resource allocation revealed by condition-dependent proteome profiling. Elife. 6. PMID 28857745 DOI: 10.7554/Elife.28034  1
2017 Yaakov G, Lerner D, Bentele K, Steinberger J, Barkai N. Coupling phenotypic persistence to DNA damage increases genetic diversity in severe stress. Nature Ecology & Evolution. 1: 16. PMID 28812556 DOI: 10.1038/S41559-016-0016  0.56
2017 Herbst RH, Bar-Zvi D, Reikhav S, Soifer I, Breker M, Jona G, Shimoni E, Schuldiner M, Levy AA, Barkai N. Heterosis as a consequence of regulatory incompatibility. Bmc Biology. 15: 38. PMID 28494792 DOI: 10.1186/S12915-017-0373-7  1
2017 Mittelman K, Barkai N. The Genetic Requirements for Pentose Fermentation in Budding Yeast. G3 (Bethesda, Md.). PMID 28404660 DOI: 10.1534/G3.117.039610  0.56
2017 Shilo BZ, Barkai N. Buffering Global Variability of Morphogen Gradients. Developmental Cell. 40: 429-438. PMID 28292422 DOI: 10.1016/J.Devcel.2016.12.012  0.72
2017 Shilo BZ, Barkai N. Lighting Up ERK Activity. Developmental Cell. 40: 115-116. PMID 28118596 DOI: 10.1016/J.Devcel.2016.12.016  0.72
2017 Metzl-Raz E, Kafri M, Yaakov G, Soifer I, Gurvich Y, Barkai N. Author response: Principles of cellular resource allocation revealed by condition-dependent proteome profiling Elife. DOI: 10.7554/Elife.28034.022  1
2016 Gispan A, Carmi M, Barkai N. Model-based analysis of DNA replication profiles: Predicting replication fork velocity and initiation rate by profiling free-cycling cells. Genome Research. PMID 28028072 DOI: 10.1101/Gr.205849.116  0.36
2016 Kafri M, Metzl-Raz E, Jonas F, Barkai N. Rethinking cell growth models. Fems Yeast Research. PMID 27650704 DOI: 10.1093/Femsyr/Fow081  0.56
2016 Bar-Ziv R, Voichek Y, Barkai N. Dealing with Gene-Dosage Imbalance during S Phase. Trends in Genetics : Tig. PMID 27575299 DOI: 10.1016/J.Tig.2016.08.006  0.72
2016 Tamari Z, Yona AH, Pilpel Y, Barkai N. Rapid evolutionary adaptation to growth on an 'unfamiliar' carbon source. Bmc Genomics. 17: 674. PMID 27552923 DOI: 10.1186/S12864-016-3010-X  1
2016 Voichek Y, Bar-Ziv R, Barkai N. A role for Rtt109 in buffering gene-dosage imbalance during DNA replication. Nucleus (Austin, Tex.). 0. PMID 27485376 DOI: 10.1080/19491034.2016.1216743  1
2016 Bar-Ziv R, Voichek Y, Barkai N. Chromatin dynamics during DNA replication. Genome Research. PMID 27225843 DOI: 10.1101/Gr.201244.115  1
2016 Voichek Y, Bar-Ziv R, Barkai N. Expression homeostasis during DNA replication. Science (New York, N.Y.). 351: 1087-90. PMID 26941319 DOI: 10.1126/Science.Aad1162  1
2016 Rahimi N, Averbukh I, Haskel-Ittah M, Degani N, Schejter ED, Barkai N, Shilo BZ. A WntD-Dependent Integral Feedback Loop Attenuates Variability in Drosophila Toll Signaling. Developmental Cell. 36: 401-14. PMID 26906736 DOI: 10.1016/J.Devcel.2016.01.023  1
2016 Gavish A, Barkai N. A two-step patterning process increases the robustness of periodic patterning in the fly eye. Journal of Biological Physics. PMID 26884095 DOI: 10.1007/S10867-016-9409-4  1
2016 Gavish A, Shwartz A, Weizman A, Schejter E, Shilo BZ, Barkai N. Periodic patterning of the Drosophila eye is stabilized by the diffusible activator Scabrous. Nature Communications. 7: 10461. PMID 26876750 DOI: 10.1038/Ncomms10461  1
2016 Tamari Z, Barkai N. Natural Diversity in Pentose Fermentation Is Explained by Variations in Histone Deacetylases. Cell Reports. 14: 458-63. PMID 26774473 DOI: 10.1016/J.Celrep.2015.12.048  1
2016 Kafri M, Metzl-Raz E, Jona G, Barkai N. The Cost of Protein Production. Cell Reports. 14: 22-31. PMID 26725116 DOI: 10.1016/J.Celrep.2015.12.015  1
2015 Shilo S, Melamed-Bessudo C, Dorone Y, Barkai N, Levy AA. DNA Crossover Motifs Associated with Epigenetic Modifications Delineate Open Chromatin Regions in Arabidopsis. The Plant Cell. 27: 2427-36. PMID 26381163 DOI: 10.1105/Tpc.15.00391  1
2015 Yanagida H, Gispan A, Kadouri N, Rozen S, Sharon M, Barkai N, Tawfik DS. The Evolutionary Potential of Phenotypic Mutations. Plos Genetics. 11: e1005445. PMID 26244544 DOI: 10.1371/Journal.Pgen.1005445  1
2014 Schmidt-Glenewinkel H, Barkai N. Loss of growth homeostasis by genetic decoupling of cell division from biomass growth: implication for size control mechanisms. Molecular Systems Biology. 10: 769. PMID 25538138 DOI: 10.15252/Msb.20145513  1
2014 Vardi N, Levy S, Gurvich Y, Polacheck T, Carmi M, Jaitin D, Amit I, Barkai N. Sequential feedback induction stabilizes the phosphate starvation response in budding yeast. Cell Reports. 9: 1122-34. PMID 25437565 DOI: 10.1016/J.Celrep.2014.10.002  1
2014 Soifer I, Barkai N. Systematic identification of cell size regulators in budding yeast. Molecular Systems Biology. 10: 761. PMID 25411401 DOI: 10.15252/Msb.20145345  1
2014 Gispan A, Carmi M, Barkai N. Checkpoint-independent scaling of the Saccharomyces cerevisiae DNA replication program. Bmc Biology. 12: 79. PMID 25288172 DOI: 10.1186/S12915-014-0079-Z  1
2014 Mosesson Y, Voichek Y, Barkai N. Divergence and selectivity of expression-coupled histone modifications in budding yeasts. Plos One. 9: e101538. PMID 25007273 DOI: 10.1371/Journal.Pone.0101538  1
2014 Averbukh I, Ben-Zvi D, Mishra S, Barkai N. Scaling morphogen gradients during tissue growth by a cell division rule. Development (Cambridge, England). 141: 2150-6. PMID 24803660 DOI: 10.1242/Dev.107011  1
2014 Tamari Z, Rosin D, Voichek Y, Barkai N. Coordination of gene expression and growth-rate in natural populations of budding yeast. Plos One. 9: e88801. PMID 24533150 DOI: 10.1371/Journal.Pone.0088801  1
2014 Ben-Zvi D, Fainsod A, Shilo BZ, Barkai N. Scaling of dorsal-ventral patterning in the Xenopus laevis embryo. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 36: 151-6. PMID 24323952 DOI: 10.1002/Bies.201300136  1
2013 Vardi N, Levy S, Assaf M, Carmi M, Barkai N. Budding yeast escape commitment to the phosphate starvation program using gene expression noise. Current Biology : Cb. 23: 2051-7. PMID 24094854 DOI: 10.1016/J.Cub.2013.08.043  1
2013 Avraham N, Soifer I, Carmi M, Barkai N. Increasing population growth by asymmetric segregation of a limiting resource during cell division. Molecular Systems Biology. 9: 656. PMID 23591772 DOI: 10.1038/Msb.2013.13  1
2013 Shilo BZ, Haskel-Ittah M, Ben-Zvi D, Schejter ED, Barkai N. Creating gradients by morphogen shuttling. Trends in Genetics : Tig. 29: 339-47. PMID 23369355 DOI: 10.1016/J.Tig.2013.01.001  1
2013 Barkai N, Shilo BZ. Developmental biology: Segmentation within scale. Nature. 493: 32-4. PMID 23254932 DOI: 10.1038/Nature11849  1
2013 Gitter A, Carmi M, Barkai N, Bar-Joseph Z. Linking the signaling cascades and dynamic regulatory networks controlling stress responses. Genome Research. 23: 365-76. PMID 23064748 DOI: 10.1101/Gr.138628.112  1
2013 Levy AA, Tirosh I, Reikhav S, Bloch Y, Barkai N. Yeast Hybrids and Polyploids as Models in Evolutionary Studies Polyploid and Hybrid Genomics. 1-14. DOI: 10.1002/9781118552872.ch1  1
2012 Rappaport N, Barkai N. Disentangling signaling gradients generated by equivalent sources. Journal of Biological Physics. 38: 267-78. PMID 23450187 DOI: 10.1007/S10867-011-9240-X  1
2012 Tamari Z, Barkai N. Improved readout precision of the Bicoid morphogen gradient by early decoding. Journal of Biological Physics. 38: 317-29. PMID 23449375 DOI: 10.1007/S10867-011-9250-8  1
2012 Haskel-Ittah M, Ben-Zvi D, Branski-Arieli M, Schejter ED, Shilo BZ, Barkai N. Self-organized shuttling: generating sharp dorsoventral polarity in the early Drosophila embryo. Cell. 150: 1016-28. PMID 22939625 DOI: 10.1016/J.Cell.2012.06.044  1
2012 Hornung G, Bar-Ziv R, Rosin D, Tokuriki N, Tawfik DS, Oren M, Barkai N. Noise-mean relationship in mutated promoters. Genome Research. 22: 2409-17. PMID 22820945 DOI: 10.1101/Gr.139378.112  1
2012 Weinberger L, Voichek Y, Tirosh I, Hornung G, Amit I, Barkai N. Expression noise and acetylation profiles distinguish HDAC functions. Molecular Cell. 47: 193-202. PMID 22683268 DOI: 10.1016/J.Molcel.2012.05.008  1
2012 Barad O, Mann M, Chapnik E, Shenoy A, Blelloch R, Barkai N, Hornstein E. Efficiency and specificity in microRNA biogenesis. Nature Structural & Molecular Biology. 19: 650-2. PMID 22580560 DOI: 10.1038/Nsmb.2293  1
2012 Hornung G, Oren M, Barkai N. Nucleosome organization affects the sensitivity of gene expression to promoter mutations. Molecular Cell. 46: 362-8. PMID 22464732 DOI: 10.1016/J.Molcel.2012.02.019  1
2012 Rosin D, Hornung G, Tirosh I, Gispan A, Barkai N. Promoter nucleosome organization shapes the evolution of gene expression. Plos Genetics. 8: e1002579. PMID 22438828 DOI: 10.1371/Journal.Pgen.1002579  1
2011 Tamari Z, Barkai N, Fouxon I. Physical aspects of precision in genetic regulation. Journal of Biological Physics. 37: 213-25. PMID 22379230 DOI: 10.1007/S10867-010-9208-2  1
2011 Levy S, Kafri M, Carmi M, Barkai N. The competitive advantage of a dual-transporter system. Science (New York, N.Y.). 334: 1408-12. PMID 22158820 DOI: 10.1126/Science.1207154  1
2011 Perrimon N, Barkai N. The era of systems developmental biology. Current Opinion in Genetics & Development. 21: 681-3. PMID 22079435 DOI: 10.1016/J.Gde.2011.10.004  1
2011 Barad O, Hornstein E, Barkai N. Robust selection of sensory organ precursors by the Notch-Delta pathway. Current Opinion in Cell Biology. 23: 663-7. PMID 21963301 DOI: 10.1016/J.Ceb.2011.09.005  1
2011 Tirosh I, Wong KH, Barkai N, Struhl K. Extensive divergence of yeast stress responses through transitions between induced and constitutive activation. Proceedings of the National Academy of Sciences of the United States of America. 108: 16693-8. PMID 21930916 DOI: 10.1073/Pnas.1113718108  1
2011 Tirosh I, Barkai N. Inferring regulatory mechanisms from patterns of evolutionary divergence. Molecular Systems Biology. 7: 530. PMID 21915117 DOI: 10.1038/Msb.2011.60  1
2011 Tsui K, Dubuis S, Gebbia M, Morse RH, Barkai N, Tirosh I, Nislow C. Evolution of nucleosome occupancy: conservation of global properties and divergence of gene-specific patterns. Molecular and Cellular Biology. 31: 4348-55. PMID 21896781 DOI: 10.1128/Mcb.05276-11  1
2011 Ben-Zvi D, Shilo BZ, Barkai N. Scaling of morphogen gradients. Current Opinion in Genetics & Development. 21: 704-10. PMID 21873045 DOI: 10.1016/J.Gde.2011.07.011  1
2011 Ben-Zvi D, Pyrowolakis G, Barkai N, Shilo BZ. Expansion-repression mechanism for scaling the Dpp activation gradient in Drosophila wing imaginal discs. Current Biology : Cb. 21: 1391-6. PMID 21835621 DOI: 10.1016/J.Cub.2011.07.015  1
2011 Afek Y, Alon N, Barad O, Hornstein E, Barkai N, Bar-Joseph Z. A biological solution to a fundamental distributed computing problem. Science (New York, N.Y.). 331: 183-5. PMID 21233379 DOI: 10.1126/Science.1193210  1
2010 Tirosh I, Reikhav S, Sigal N, Assia Y, Barkai N. Chromatin regulators as capacitors of interspecies variations in gene expression. Molecular Systems Biology. 6: 435. PMID 21119629 DOI: 10.1038/Msb.2010.84  1
2010 Koren A, Tsai HJ, Tirosh I, Burrack LS, Barkai N, Berman J. Epigenetically-inherited centromere and neocentromere DNA replicates earliest in S-phase. Plos Genetics. 6: e1001068. PMID 20808889 DOI: 10.1371/Journal.Pgen.1001068  1
2010 Barad O, Rosin D, Hornstein E, Barkai N. Error minimization in lateral inhibition circuits. Science Signaling. 3: ra51. PMID 20606215 DOI: 10.1126/Scisignal.2000857  1
2010 Tirosh I, Sigal N, Barkai N. Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences. Molecular Systems Biology. 6: 365. PMID 20461072 DOI: 10.1038/Msb.2010.20  1
2010 Tirosh I, Sigal N, Barkai N. Widespread remodeling of mid-coding sequence nucleosomes by Isw1. Genome Biology. 11: R49. PMID 20459718 DOI: 10.1186/Gb-2010-11-5-R49  1
2010 Ben-Zvi D, Barkai N. Scaling of morphogen gradients by an expansion-repression integral feedback control. Proceedings of the National Academy of Sciences of the United States of America. 107: 6924-9. PMID 20356830 DOI: 10.1073/Pnas.0912734107  1
2010 Koren A, Soifer I, Barkai N. MRC1-dependent scaling of the budding yeast DNA replication timing program. Genome Research. 20: 781-90. PMID 20219942 DOI: 10.1101/Gr.102764.109  1
2010 Barkai N, VanHook AM. Science Signaling Podcast: 6 July 2010 Science Signaling. 3. DOI: 10.1126/Scisignal.3129Pc14  1
2010 Geijer C, Joseph-Strauss D, Simchen G, Barkai N, Hohmann S. Saccharomyces cerevisiae spore germination Topics in Current Genetics. 21: 29-41. DOI: 10.1007/978-3-642-12422-8_3  1
2009 Barkai N, Shilo BZ. Robust generation and decoding of morphogen gradients. Cold Spring Harbor Perspectives in Biology. 1: a001990. PMID 20066119 DOI: 10.1101/Cshperspect.A001990  1
2009 Tirosh I, Barkai N, Verstrepen KJ. Promoter architecture and the evolvability of gene expression. Journal of Biology. 8: 95. PMID 20017897 DOI: 10.1186/Jbiol204  1
2009 Levy S, Barkai N. Coordination of gene expression with growth rate: a feedback or a feed-forward strategy? Febs Letters. 583: 3974-8. PMID 19878679 DOI: 10.1016/J.Febslet.2009.10.071  1
2009 Doncic A, Ben-Jacob E, Einav S, Barkai N. Reverse engineering of the spindle assembly checkpoint. Plos One. 4: e6495. PMID 19652707 DOI: 10.1371/Journal.Pone.0006495  1
2009 Tirosh I, Reikhav S, Levy AA, Barkai N. A yeast hybrid provides insight into the evolution of gene expression regulation. Science (New York, N.Y.). 324: 659-62. PMID 19407207 DOI: 10.1126/Science.1169766  1
2009 Barkai N, Ben-Zvi D. 'Big frog, small frog'--maintaining proportions in embryonic development: delivered on 2 July 2008 at the 33rd FEBS Congress in Athens, Greece. The Febs Journal. 276: 1196-207. PMID 19175672 DOI: 10.1111/J.1742-4658.2008.06854.X  1
2009 Ben-Zvi D, Shilo BZ, Fainsod A, Barkai N. Reply to Francois et al Nature. 461. DOI: 10.1038/Nature08306  1
2008 Ben-Zvi D, Shilo BZ, Fainsod A, Barkai N. Scaling of the BMP activation gradient in Xenopus embryos. Nature. 453: 1205-11. PMID 18580943 DOI: 10.1038/Nature07059  1
2008 Tirosh I, Barkai N. Two strategies for gene regulation by promoter nucleosomes. Genome Research. 18: 1084-91. PMID 18448704 DOI: 10.1101/Gr.076059.108  1
2008 Tirosh I, Barkai N. Evolution of gene sequence and gene expression are not correlated in yeast. Trends in Genetics : Tig. 24: 109-13. PMID 18249461 DOI: 10.1016/J.Tig.2007.12.004  1
2008 Tirosh I, Weinberger A, Bezalel D, Kaganovich M, Barkai N. On the relation between promoter divergence and gene expression evolution. Molecular Systems Biology. 4: 159. PMID 18197176 DOI: 10.1038/Msb4100198  1
2008 Bergmann S, Tamari Z, Schejter E, Shilo BZ, Barkai N. Re-examining the stability of the Bicoid morphogen gradient. Cell. 132: 15-7; author reply 1. PMID 18191212 DOI: 10.1016/J.Cell.2007.12.022  1
2008 Hornung G, Barkai N. Noise propagation and signaling sensitivity in biological networks: a role for positive feedback. Plos Computational Biology. 4: e8. PMID 18179281 DOI: 10.1371/Journal.Pcbi.0040008  1
2007 Shilo BZ, Barkai N. EGF receptor signaling - a quantitative view. Current Biology : Cb. 17: R1038-41. PMID 18088582 DOI: 10.1016/J.Cub.2007.10.062  1
2007 Barkai N, Shilo BZ. Variability and robustness in biomolecular systems. Molecular Cell. 28: 755-60. PMID 18082601 DOI: 10.1016/J.Molcel.2007.11.013  1
2007 Joseph-Strauss D, Zenvirth D, Simchen G, Barkai N. Spore germination in Saccharomyces cerevisiae: global gene expression patterns and cell cycle landmarks. Genome Biology. 8: R241. PMID 17999778 DOI: 10.1186/Gb-2007-8-11-R241  1
2007 Tirosh I, Bilu Y, Barkai N. Comparative biology: beyond sequence analysis. Current Opinion in Biotechnology. 18: 371-7. PMID 17693073 DOI: 10.1016/J.Copbio.2007.07.003  1
2007 Koren A, Tirosh I, Barkai N. Autocorrelation analysis reveals widespread spatial biases in microarray experiments. Bmc Genomics. 8: 164. PMID 17565680 DOI: 10.1186/1471-2164-8-164  1
2007 Tirosh I, Berman J, Barkai N. The pattern and evolution of yeast promoter bendability. Trends in Genetics : Tig. 23: 318-21. PMID 17418911 DOI: 10.1016/J.Tig.2007.03.015  1
2007 Tirosh I, Barkai N. Comparative analysis indicates regulatory neofunctionalization of yeast duplicates. Genome Biology. 8: R50. PMID 17411427 DOI: 10.1186/Gb-2007-8-4-R50  1
2007 Levy S, Ihmels J, Carmi M, Weinberger A, Friedlander G, Barkai N. Strategy of transcription regulation in the budding yeast Plos One. 2. PMID 17327914 DOI: 10.1371/Journal.Pone.0000250  1
2007 Bergmann S, Sandler O, Sberro H, Shnider S, Schejter E, Shilo BZ, Barkai N. Pre-steady-state decoding of the Bicoid morphogen gradient. Plos Biology. 5: e46. PMID 17298180 DOI: 10.1371/Journal.Pbio.0050046  1
2006 Bilu Y, Shlomi T, Barkai N, Ruppin E. Conservation of expression and sequence of metabolic genes is reflected by activity across metabolic states. Plos Computational Biology. 2: e106. PMID 16933982 DOI: 10.1371/Journal.Pcbi.0020106  1
2006 Reiner O, Coquelle FM, Peter B, Levy T, Kaplan A, Sapir T, Orr I, Barkai N, Eichele G, Bergmann S. The evolving doublecortin (DCX) superfamily. Bmc Genomics. 7: 188. PMID 16869982 DOI: 10.1186/1471-2164-7-188  1
2006 Tirosh I, Weinberger A, Carmi M, Barkai N. A genetic signature of interspecies variations in gene expression. Nature Genetics. 38: 830-4. PMID 16783381 DOI: 10.1038/Ng1819  1
2006 Doncic A, Ben-Jacob E, Barkai N. Noise resistance in the spindle assembly checkpoint. Molecular Systems Biology. 2: 2006.0027. PMID 16738571 DOI: 10.1038/Msb4100070  1
2006 Bar-Even A, Paulsson J, Maheshri N, Carmi M, O'Shea E, Pilpel Y, Barkai N. Noise in protein expression scales with natural protein abundance. Nature Genetics. 38: 636-43. PMID 16715097 DOI: 10.1038/Ng1807  1
2006 Coquelle FM, Levy T, Bergmann S, Wolf SG, Bar-El D, Sapir T, Brody Y, Orr I, Barkai N, Eichele G, Reiner O. Common and divergent roles for members of the mouse DCX superfamily. Cell Cycle (Georgetown, Tex.). 5: 976-83. PMID 16628014 DOI: 10.4161/Cc.5.9.2715  1
2006 Friedlander G, Joseph-Strauss D, Carmi M, Zenvirth D, Simchen G, Barkai N. Modulation of the transcription regulatory program in yeast cells committed to sporulation Genome Biology. 7. PMID 16542486 DOI: 10.1186/Gb-2006-7-3-R20  1
2005 Melen GJ, Levy S, Barkai N, Shilo BZ. Threshold responses to morphogen gradients by zero-order ultrasensitivity. Molecular Systems Biology. 1: 2005.0028. PMID 16729063 DOI: 10.1038/Msb4100036  1
2005 Ihmels J, Bergmann S, Berman J, Barkai N. Comparative gene expression analysis by differential clustering approach: application to the Candida albicans transcription program. Plos Genetics. 1: e39. PMID 16470937 DOI: 10.1371/Journal.Pgen.0010039  1
2005 Hornung G, Berkowitz B, Barkai N. Morphogen gradient formation in a complex environment: an anomalous diffusion model. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 041916. PMID 16383429 DOI: 10.1103/Physreve.72.041916  1
2005 Bilu Y, Barkai N. The design of transcription-factor binding sites is affected by combinatorial regulation. Genome Biology. 6: R103. PMID 16356266 DOI: 10.1186/Gb-2005-6-12-R103  1
2005 Ihmels J, Bergmann S, Gerami-Nejad M, Yanai I, McClellan M, Berman J, Barkai N. Rewiring of the yeast transcriptional network through the evolution of motif usage. Science (New York, N.Y.). 309: 938-40. PMID 16081737 DOI: 10.1126/Science.1113833  1
2005 Rappaport N, Winter S, Barkai N. The ups and downs of biological timers. Theoretical Biology & Medical Modelling. 2: 22. PMID 15967029 DOI: 10.1186/1742-4682-2-22  1
2005 Doncic A, Ben-Jacob E, Barkai N. Evaluating putative mechanisms of the mitotic spindle checkpoint. Proceedings of the National Academy of Sciences of the United States of America. 102: 6332-7. PMID 15851663 DOI: 10.1073/Pnas.0409142102  1
2005 Tirosh I, Barkai N. Computational verification of protein-protein interactions by orthologous co-expression. Bmc Bioinformatics. 6: 40. PMID 15740634 DOI: 10.1186/1471-2105-6-40  1
2005 Eldar A, Barkai N. Interpreting clone-mediated perturbations of morphogen profiles. Developmental Biology. 278: 203-7. PMID 15649472 DOI: 10.1016/J.Ydbio.2004.11.002  1
2005 Ihmels J, Bergmann S, Berman J, Barkai N. Comparative gene expression analysis by a differential clustering approach: Application to the candida albicans transcription program Plos Genetics. 1: 380-393. DOI: 10.1371/journal.pgen.0010039  1
2004 Eldar A, Shilo BZ, Barkai N. Elucidating mechanisms underlying robustness of morphogen gradients. Current Opinion in Genetics & Development. 14: 435-9. PMID 15261661 DOI: 10.1016/J.Gde.2004.06.009  1
2004 Ihmels J, Bergmann S, Barkai N. Defining transcription modules using large-scale gene expression data. Bioinformatics (Oxford, England). 20: 1993-2003. PMID 15044247 DOI: 10.1093/Bioinformatics/Bth166  1
2004 Bergmann S, Ihmels J, Barkai N. Similarities and differences in genome-wide expression data of six organisms. Plos Biology. 2: E9. PMID 14737187 DOI: 10.1371/Journal.Pbio.0020009  1
2004 Ihmels J, Levy R, Barkai N. Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae. Nature Biotechnology. 22: 86-92. PMID 14647306 DOI: 10.1038/Nbt918  1
2003 Eldar A, Rosin D, Shilo BZ, Barkai N. Self-enhanced ligand degradation underlies robustness of morphogen gradients. Developmental Cell. 5: 635-46. PMID 14536064 DOI: 10.1016/S1534-5807(03)00292-2  1
2003 Bergmann S, Ihmels J, Barkai N. Iterative signature algorithm for the analysis of large-scale gene expression data. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 67: 031902. PMID 12689096 DOI: 10.1103/Physreve.67.031902  1
2002 Barkai N, Shilo BZ. Modeling pattern formation: counting to two in the Drosophila egg. Current Biology : Cb. 12: R493-5. PMID 12176350 DOI: 10.1016/S0960-9822(02)00967-3  1
2002 Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, Barkai N. Revealing modular organization in the yeast transcriptional network. Nature Genetics. 31: 370-7. PMID 12134151 DOI: 10.1038/ng941  1
2002 Vilar JM, Kueh HY, Barkai N, Leibler S. Mechanisms of noise-resistance in genetic oscillators. Proceedings of the National Academy of Sciences of the United States of America. 99: 5988-92. PMID 11972055 DOI: 10.1073/Pnas.092133899  1
2001 Barkai N, Alon U, Leibler S. Robust amplification in adaptive signal transduction networks Comptes Rendus De L'Academie Des Sciences - Series Iv: Physics, Astrophysics. 2: 871-877. DOI: 10.1016/S1296-2147(01)01230-6  1
2000 Barkai N, Leibler S. Circadian clocks limited by noise. Nature. 403: 267-8. PMID 10659837 DOI: 10.1038/35002258  1
1999 Alon U, Surette MG, Barkai N, Leibler S. Robustness in bacterial chemotaxis. Nature. 397: 168-71. PMID 9923680 DOI: 10.1038/16483  1
1998 Barkai N, Rose MD, Wingreen NS. Protease helps yeast find mating partners. Nature. 396: 422-3. PMID 9853747 DOI: 10.1038/24760  1
1998 Barkai N, Leibler S. Bacterial chemotaxis. United we sense... Nature. 393: 18-9, 21. PMID 9590684 DOI: 10.1038/29881  1
1997 Barkai N, Leibler S. Robustness in simple biochemical networks. Nature. 387: 913-7. PMID 9202124 DOI: 10.1038/43199  1
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