Daniel Figeys - Publications

University of Ottawa, Ottawa, ON, Canada 

222 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Wislet-Gendebien S, Visanji NP, Whitehead SN, Marsilio D, Hou W, Figeys D, Fraser PE, Bennett SAL, Tandon A. Retraction Note to: Differential regulation of wild-type and mutant alpha-synuclein binding to synaptic membranes by cytosolic factors. Bmc Neuroscience. 22: 40. PMID 34082697 DOI: 10.1186/s12868-021-00644-1  0.48
2021 Zhang X, Cheng K, Ning Z, Mayne J, Walker K, Chi H, Farnsworth CL, Lee K, Figeys D. Exploring the Microbiome-Wide Lysine Acetylation, Succinylation, and Propionylation in Human Gut Microbiota. Analytical Chemistry. PMID 33885279 DOI: 10.1021/acs.analchem.1c00962  0.64
2020 Li L, Ryan J, Ning Z, Zhang X, Mayne J, Lavallée-Adam M, Stintzi A, Figeys D. A functional ecological network based on metaproteomics responses of individual gut microbiomes to resistant starches. Computational and Structural Biotechnology Journal. 18: 3833-3842. PMID 33335682 DOI: 10.1016/j.csbj.2020.10.042  0.64
2020 Smyth P, Zhang X, Ning Z, Mayne J, Moore JI, Walker K, Lavallée-Adam M, Figeys D. Studying the Temporal Dynamics of the Gut Microbiota Using Metabolic Stable Isotope Labeling and Metaproteomics. Analytical Chemistry. PMID 33253538 DOI: 10.1021/acs.analchem.0c02070  0.64
2020 Zhang X, Ning Z, Mayne J, Yang Y, Deeke SA, Walker K, Farnsworth CL, Stokes MP, Couture JF, Mack D, Stintzi A, Figeys D. Widespread protein lysine acetylation in gut microbiome and its alterations in patients with Crohn's disease. Nature Communications. 11: 4120. PMID 32807798 DOI: 10.1038/S41467-020-17916-9  0.64
2020 Pelletier A, Chung YE, Ning Z, Wong N, Figeys D, Lavallée-Adam M. MealTime-MS: A Machine Learning-Guided Real-Time Mass Spectrometry Analysis for Protein Identification and Efficient Dynamic Exclusion. Journal of the American Society For Mass Spectrometry. PMID 32510216 DOI: 10.1021/Jasms.0C00064  0.64
2020 Cheng K, Ning Z, Zhang X, Li L, Liao B, Mayne J, Figeys D. MetaLab 2.0 enables accurate post-translational modifications profiling in metaproteomics. Journal of the American Society For Mass Spectrometry. PMID 32396346 DOI: 10.1021/Jasms.0C00083  0.64
2020 Li L, Chang L, Zhang X, Ning Z, Mayne J, Ye Y, Stintzi A, Liu J, Figeys D. Berberine and its structural analogs have differing effects on functional profiles of individual gut microbiomes. Gut Microbes. 1-14. PMID 32372706 DOI: 10.1080/19490976.2020.1755413  0.64
2020 Simopoulos CMA, Ning Z, Zhang X, Li L, Walker K, Lavallée-Adam M, Figeys D. pepFunk: a tool for peptide-centric functional analysis of metaproteomic human gut microbiome studies. Bioinformatics (Oxford, England). PMID 32369596 DOI: 10.1093/Bioinformatics/Btaa289  0.64
2020 Hao Z, Li L, Ning Z, Zhang X, Mayne J, Cheng K, Walker K, Liu H, Figeys D. Metaproteomics reveals growth phase-dependent responses of an in vitro gut microbiota to metformin. Journal of the American Society For Mass Spectrometry. PMID 32320607 DOI: 10.1021/Jasms.0C00054  0.64
2020 Li L, Ning Z, Zhang X, Mayne J, Cheng K, Stintzi A, Figeys D. RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs. Microbiome. 8: 33. PMID 32160905 DOI: 10.1186/S40168-020-00806-Z  0.64
2020 Wang J, Zhang X, Li L, Ning Z, Mayne J, Schmitt-Ulms C, Walker K, Cheng K, Figeys D. Differential Lysis Approach Enables Selective Extraction of Taxon-Specific Proteins for Gut Metaproteomics. Analytical Chemistry. PMID 32096399 DOI: 10.1021/Acs.Analchem.0C00062  0.64
2019 Adler P, Chiang CK, Mayne J, Ning Z, Zhang X, Xu B, Cheng HM, Figeys D. Aging Disrupts the Circadian Patterns of Protein Expression in the Murine Hippocampus. Frontiers in Aging Neuroscience. 11: 368. PMID 32009941 DOI: 10.3389/Fnagi.2019.00368  0.64
2019 Li H, Li L, Cheng K, Ning Z, Mayne J, Zhang X, Walker K, Chen R, Twine S, Li J, Figeys D. A Chemoenzymatic Method for Glycoproteomic N-glycan Type Quantitation. Analytical Chemistry. PMID 31809011 DOI: 10.1021/Acs.Analchem.9B04937  0.64
2019 Yang Y, Joshi M, Takahashi YH, Ning Z, Qu Q, Brunzelle JS, Skiniotis G, Figeys D, Shilatifard A, Couture JF. A non-canonical monovalent zinc finger stabilizes the integration of Cfp1 into the H3K4 methyltransferase complex COMPASS. Nucleic Acids Research. PMID 31724694 DOI: 10.1093/Nar/Gkz1037  0.64
2019 Li L, Abou-Samra E, Ning Z, Zhang X, Mayne J, Wang J, Cheng K, Walker K, Stintzi A, Figeys D. An in vitro model maintaining taxon-specific functional activities of the gut microbiome. Nature Communications. 10: 4146. PMID 31515476 DOI: 10.1038/S41467-019-12087-8  0.64
2019 Adler P, Mayne J, Walker K, Ning Z, Figeys D. Therapeutic targeting of casein kinase 1δ/ε in an Alzheimer's disease mouse model. Journal of Proteome Research. PMID 31334659 DOI: 10.1021/Acs.Jproteome.9B00312  0.64
2019 Peters DL, Wang W, Zhang X, Ning Z, Mayne J, Figeys D. Metaproteomic and Metabolomic Approaches for Characterizing the Gut Microbiome. Proteomics. e1800363. PMID 31321880 DOI: 10.1002/Pmic.201800363  0.64
2018 Zhang X, Deeke SA, Ning Z, Starr AE, Butcher J, Li J, Mayne J, Cheng K, Liao B, Li L, Singleton R, Mack D, Stintzi A, Figeys D. Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease. Nature Communications. 9: 2873. PMID 30030445 DOI: 10.1038/S41467-018-05357-4  0.64
2018 Mayne J, Ooi TC, Tepliakova L, Seebun D, Walker K, Mohottalage D, Ning Z, Abujrad H, Mbikay M, Wassef H, Chrétien M, Figeys D. Associations Between Soluble LDLR and Lipoproteins in a Caucasian Cohort and The Effect of PCSK9 Loss-of-Function. The Journal of Clinical Endocrinology and Metabolism. PMID 29982529 DOI: 10.1210/Jc.2018-00777  0.64
2018 Liao B, Ning Z, Cheng K, Zhang X, Li L, Mayne J, Figeys D. iMetaLab 1.0: A web platform for metaproteomics data analysis. Bioinformatics (Oxford, England). PMID 29912378 DOI: 10.1093/Bioinformatics/Bty466  0.64
2018 Deeke SA, Starr AE, Ning Z, Ahmadi S, Zhang X, Mayne J, Chiang CK, Singleton R, Benchimol EI, Mack DR, Stintzi A, Figeys D. Mucosal-luminal interface proteomics reveals biomarkers of pediatric inflammatory bowel disease-associated colitis. The American Journal of Gastroenterology. PMID 29531307 DOI: 10.1038/S41395-018-0024-9  0.64
2018 Catelas I, Lehoux EA, Ning Z, Figeys D, Baskey SJ, Beaulé PE. Differential Proteomic Analysis of Synovial Fluid from Hip Arthroplasty Patients with a Pseudotumor vs. Periprosthetic Osteolysis. Journal of Orthopaedic Research : Official Publication of the Orthopaedic Research Society. PMID 29352728 DOI: 10.1002/Jor.23858  0.64
2017 Cheng K, Ning Z, Zhang X, Li L, Liao B, Mayne J, Stintzi A, Figeys D. MetaLab: an automated pipeline for metaproteomic data analysis. Microbiome. 5: 157. PMID 29197424 DOI: 10.1186/S40168-017-0375-2  0.64
2017 Li L, Zhang X, Ning Z, Mayne J, Moore JI, Butcher J, Chiang CK, Mack DR, Stintzi A, Figeys D. Evaluating in vitro culture medium of gut microbiome with orthogonal experimental design and metaproteomics approach. Journal of Proteome Research. PMID 29130306 DOI: 10.1021/Acs.Jproteome.7B00461  0.64
2017 Starr AE, Deeke SA, Li L, Zhang X, Daoud R, Ryan J, Ning Z, Cheng K, Nguyen LVH, Abou Samra E, Lavallee-Adam M, Figeys D. Proteomic and metaproteomic approaches to understand host-microbe interactions. Analytical Chemistry. PMID 29061041 DOI: 10.1021/Acs.Analchem.7B04340  0.64
2017 Chiang CK, Tworak A, Kevany BM, Xu B, Mayne J, Ning Z, Figeys D, Palczewski K. Quantitative phosphoproteomics reveals involvement of multiple signaling pathways in early phagocytosis by the retinal pigmented epithelium. The Journal of Biological Chemistry. PMID 28978645 DOI: 10.1074/Jbc.M117.812677  0.64
2017 Zhang X, Chen W, Ning Z, Mayne J, Mack DR, Stintzi A, Tian R, Figeys D. A deep metaproteomics approach for the study of human microbiomes. Analytical Chemistry. PMID 28749657 DOI: 10.1021/Acs.Analchem.7B02224  0.68
2017 Zhang X, Li L, Mayne J, Ning Z, Stintzi A, Figeys D. Assessing the impact of protein extraction methods for human gut metaproteomics. Journal of Proteomics. PMID 28705725 DOI: 10.1016/J.Jprot.2017.07.001  0.64
2017 Chiang CK, Xu B, Mehta N, Mayne J, Sun WY, Cheng K, Ning Z, Dong J, Zou H, Cheng HM, Figeys D. Phosphoproteome Profiling Reveals Circadian Clock Regulation of Posttranslational Modifications in the Murine Hippocampus. Frontiers in Neurology. 8: 110. PMID 28382018 DOI: 10.3389/Fneur.2017.00110  0.64
2016 Mottawea W, Chiang CK, Mühlbauer M, Starr AE, Butcher J, Abujamel T, Deeke SA, Brandel A, Zhou H, Shokralla S, Hajibabaei M, Singleton R, Benchimol EI, Jobin C, Mack DR, ... Figeys D, et al. Altered intestinal microbiota-host mitochondria crosstalk in new onset Crohn's disease. Nature Communications. 7: 13419. PMID 27876802 DOI: 10.1038/Ncomms13419  0.68
2016 Chen R, Cheng K, Ning Z, Figeys D. N-glycopeptide Reduction with Exoglycosidases Enables Accurate Characterization of Site-specific N-glycosylation. Analytical Chemistry. PMID 27808502 DOI: 10.1021/Acs.Analchem.6B03531  0.64
2016 Birjandi AP, Bojko B, Ning Z, Figeys D, Pawliszyn J. High throughput solid phase microextraction: A new alternative for analysis of cellular lipidome? Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. PMID 27720680 DOI: 10.1016/J.Jchromb.2016.09.034  0.64
2016 Zhang X, Ning Z, Mayne J, Moore JI, Li J, Butcher J, Deeke SA, Chen R, Chiang CK, Wen M, Mack D, Stintzi A, Figeys D. MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota. Microbiome. 4: 31. PMID 27343061 DOI: 10.1186/S40168-016-0176-Z  0.64
2016 Zhang X, Ning Z, Mayne J, Deeke SA, Li J, Starr AE, Chen R, Singleton R, Butcher J, Mack DR, Stintzi A, Figeys D. In vitro metabolic labeling of intestinal microbiota for quantitative metaproteomics. Analytical Chemistry. PMID 27248155 DOI: 10.1021/Acs.Analchem.6B01412  1
2016 Liu X, Xu Y, Meng Q, Zheng Q, Wu J, Wang C, Jia W, Figeys D, Chang Y, Zhou H. Proteomic analysis of minute amount of colonic biopsies by enteroscopy sampling. Biochemical and Biophysical Research Communications. PMID 27230957 DOI: 10.1016/J.Bbrc.2016.05.114  1
2016 Starr AE, Deeke SA, Ning Z, Chiang CK, Zhang X, Mottawea W, Singleton R, Benchimol EI, Wen M, Mack DR, Stintzi A, Figeys D. Proteomic analysis of ascending colon biopsies from a paediatric inflammatory bowel disease inception cohort identifies protein biomarkers that differentiate Crohn's disease from UC. Gut. PMID 27216938 DOI: 10.1136/Gutjnl-2015-310705  0.64
2016 Chen R, Zou H, Figeys D. Detergent Assisted Glycoprotein Capture: A Versatile Tool for In-depth N-glycoproteome Analysis. Journal of Proteome Research. PMID 27147131 DOI: 10.1021/Acs.Jproteome.6B00056  1
2016 Ning Z, Star AT, Mierzwa A, Lanouette S, Mayne J, Couture JF, Figeys D. A charge-suppressing strategy for probing protein methylation. Chemical Communications (Cambridge, England). 52: 5474-7. PMID 27021271 DOI: 10.1039/C6Cc00814C  1
2016 Shao Y, Yamamoto M, Figeys D, Ning Z, Chan HM. Proteome profiling reveals regional protein alteration in cerebrum of common marmoset (Callithrix jacchus) exposed to methylmercury. Toxicology. PMID 27012723 DOI: 10.1016/J.Tox.2016.03.001  0.64
2016 Ryczko MC, Pawling J, Chen R, Abdel Rahman AM, Yau K, Copeland JK, Zhang C, Surendra A, Guttman DS, Figeys D, Dennis JW. Metabolic Reprogramming by Hexosamine Biosynthetic and Golgi N-Glycan Branching Pathways. Scientific Reports. 6: 23043. PMID 26972830 DOI: 10.1038/Srep23043  1
2016 Ning Z, Zhang X, Mayne J, Figeys D. Peptide-centric approaches provide an alternative perspective to re-examine quantitative proteomic data. Analytical Chemistry. PMID 26788870 DOI: 10.1021/Acs.Analchem.5B04148  1
2016 Desrochers GF, Sherratt AR, Blais DR, Nasheri N, Ning Z, Figeys D, Goto NK, Pezacki JP. Profiling Kinase Activity during Hepatitis C Virus Replication Using a Wortmannin Probe Acs Infectious Diseases. 1: 443-452. DOI: 10.1021/acsinfecdis.5b00083  1
2015 Desrochers GF, Sherratt AR, Blais DR, Nasheri N, Ning Z, Figeys D, Goto NK, Pezacki JP. Profiling Kinase Activity during Hepatitis C Virus Replication Using a Wortmannin Probe. Acs Infectious Diseases. 1: 443-52. PMID 27617927 DOI: 10.1021/Acsinfecdis.5B00083  0.64
2015 Ge Y, Ning Z, Wang Y, Zheng Y, Zhang C, Figeys D. Quantitative proteomic analysis of Dunaliella salina upon acute arsenate exposure. Chemosphere. 145: 112-118. PMID 26688246 DOI: 10.1016/J.Chemosphere.2015.11.049  1
2015 Xu J, Gao J, Yu C, He H, Yang Y, Figeys D, Zhou H. Development of an On-line pH Gradient-eluted Strong Cation Exchange NanoESI-MS/MS for Proteomic Analysis Facilitates Basic and Histidine-containing Peptides Identification. Analytical Chemistry. PMID 26646553 DOI: 10.1021/Acs.Analchem.5B04000  1
2015 Mayne J, Ning Z, Zhang X, Starr AE, Chen R, Deeke S, Chiang CK, Xu B, Wen M, Cheng K, Seebun D, Star A, Moore JI, Figeys D. Bottom-Up Proteomics (2013-2015): Keeping Up in the Era of Systems Biology. Analytical Chemistry. PMID 26558748 DOI: 10.1021/Acs.Analchem.5B04230  1
2015 Shao Y, Figeys D, Ning Z, Mailloux R, Chan HM. Methylmercury can induce Parkinson's-like neurotoxicity similar to 1-methyl-4- phenylpyridinium: a genomic and proteomic analysis on MN9D dopaminergic neuron cells. The Journal of Toxicological Sciences. 40: 817-28. PMID 26558463 DOI: 10.2131/Jts.40.817  1
2015 Tan Y, AlKhamees B, Jia D, Li L, Couture JF, Figeys D, Jinushi M, Wang L. MFG-E8 Is Critical for Embryonic Stem Cell-Mediated T Cell Immunomodulation. Stem Cell Reports. PMID 26455415 DOI: 10.1016/J.Stemcr.2015.09.005  1
2015 Mazereeuw G, Herrmann N, Xu H, Blanchard AP, Figeys D, Oh PI, Bennett SA, Lanctôt KL. Platelet activating factors are associated with depressive symptoms in coronary artery disease patients: a hypothesis-generating study. Neuropsychiatric Disease and Treatment. 11: 2309-14. PMID 26379437 DOI: 10.2147/Ndt.S87111  1
2015 Nasheri N, Ning Z, Figeys D, Yao S, Goto NK, Pezacki JP. Activity-based profiling of the proteasome pathway during hepatitis C virus infection. Proteomics. PMID 26314548 DOI: 10.1002/Pmic.201500169  1
2015 Mehta N, Cheng AH, Chiang CK, Mendoza-Viveros L, Ling HH, Patel A, Xu B, Figeys D, Cheng HY. GRK2 Fine-Tunes Circadian Clock Speed and Entrainment via Transcriptional and Post-translational Control of PERIOD Proteins. Cell Reports. 12: 1272-88. PMID 26279567 DOI: 10.1016/J.Celrep.2015.07.037  1
2015 Starr AE, Lemieux V, Noad J, Moore JI, Dewpura T, Raymond A, Chrétien M, Figeys D, Mayne J. β-Estradiol results in a proprotein convertase subtilisin/kexin type 9-dependent increase in low-density lipoprotein receptor levels in human hepatic HuH7 cells. The Febs Journal. 282: 2682-96. PMID 25913303 DOI: 10.1111/Febs.13309  1
2015 Shao Y, Yamamoto M, Figeys D, Ning Z, Chan HM. Proteomic Analysis of Cerebellum in Common Marmoset Exposed to Methylmercury. Toxicological Sciences : An Official Journal of the Society of Toxicology. 146: 43-51. PMID 25809596 DOI: 10.1093/Toxsci/Kfv069  1
2015 Gagné JP, Ethier C, Defoy D, Bourassa S, Langelier MF, Riccio AA, Pascal JM, Moon KM, Foster LJ, Ning Z, Figeys D, Droit A, Poirier GG. Quantitative site-specific ADP-ribosylation profiling of DNA-dependent PARPs. Dna Repair. 30: 68-79. PMID 25800440 DOI: 10.1016/J.Dnarep.2015.02.004  1
2015 Huang TS, Li L, Moalim-Nour L, Jia D, Bai J, Yao Z, Bennett SA, Figeys D, Wang L. A Regulatory Network Involving β-Catenin, e-Cadherin, PI3k/Akt, and Slug Balances Self-Renewal and Differentiation of Human Pluripotent Stem Cells In Response to Wnt Signaling. Stem Cells (Dayton, Ohio). 33: 1419-33. PMID 25538040 DOI: 10.1002/Stem.1944  1
2015 Lanouette S, Davey JA, Elisma F, Ning Z, Figeys D, Chica RA, Couture JF. Discovery of substrates for a SET domain lysine methyltransferase predicted by multistate computational protein design. Structure (London, England : 1993). 23: 206-15. PMID 25533488 DOI: 10.1016/J.Str.2014.11.004  0.68
2015 Jia D, Yang W, Li L, Liu H, Tan Y, Ooi S, Chi L, Filion LG, Figeys D, Wang L. β-Catenin and NF-κB co-activation triggered by TLR3 stimulation facilitates stem cell-like phenotypes in breast cancer. Cell Death and Differentiation. 22: 298-310. PMID 25257174 DOI: 10.1038/Cdd.2014.145  1
2015 Lanouette S, Davey JA, Elisma F, Ning Z, Figeys D, Chica RA, Couture JF. Discovery of substrates for a SET domain lysine methyltransferase predicted by multistate computational protein design Structure. 23: 206-215. DOI: 10.1016/j.str.2014.11.004  1
2014 Chiang CK, Mehta N, Patel A, Zhang P, Ning Z, Mayne J, Sun WY, Cheng HY, Figeys D. The proteomic landscape of the suprachiasmatic nucleus clock reveals large-scale coordination of key biological processes. Plos Genetics. 10: e1004695. PMID 25330117 DOI: 10.1371/Journal.Pgen.1004695  1
2014 Parsanejad M, Bourquard N, Qu D, Zhang Y, Huang E, Rousseaux MW, Aleyasin H, Irrcher I, Callaghan S, Vaillant DC, Kim RH, Slack RS, Mak TW, Reddy ST, Figeys D, et al. DJ-1 interacts with and regulates paraoxonase-2, an enzyme critical for neuronal survival in response to oxidative stress. Plos One. 9: e106601. PMID 25210784 DOI: 10.1371/Journal.Pone.0106601  1
2014 Cheng K, Chen R, Seebun D, Ye M, Figeys D, Zou H. Large-scale characterization of intact N-glycopeptides using an automated glycoproteomic method. Journal of Proteomics. 110: 145-54. PMID 25182382 DOI: 10.1016/J.Jprot.2014.08.006  1
2014 Ling HH, Beaulé C, Chiang CK, Tian R, Figeys D, Cheng HY. Time-of-day- and light-dependent expression of ubiquitin protein ligase E3 component N-recognin 4 (UBR4) in the suprachiasmatic nucleus circadian clock. Plos One. 9: e103103. PMID 25084275 DOI: 10.1371/Journal.Pone.0103103  1
2014 Mazereeuw G, Herrmann N, Xu H, Figeys D, Oh PI, Bennett SA, Lanctôt KL. Platelet-activating factors are associated with cognitive deficits in depressed coronary artery disease patients: a hypothesis-generating study. Journal of Neuroinflammation. 11: 119. PMID 24996486 DOI: 10.1186/1742-2094-11-119  1
2014 Ning Z, Hawley B, Chiang CK, Seebun D, Figeys D. Detecting protein-protein interactions/complex components using mass spectrometry coupled techniques. Methods in Molecular Biology (Clifton, N.J.). 1164: 1-13. PMID 24927830 DOI: 10.1007/978-1-4939-0805-9_1  1
2014 Parsanejad M, Zhang Y, Qu D, Irrcher I, Rousseaux MW, Aleyasin H, Kamkar F, Callaghan S, Slack RS, Mak TW, Lee S, Figeys D, Park DS. Regulation of the VHL/HIF-1 pathway by DJ-1. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 34: 8043-50. PMID 24899725 DOI: 10.1523/Jneurosci.1244-13.2014  1
2014 Sherratt AR, Nasheri N, McKay CS, O'Hara S, Hunt A, Ning Z, Figeys D, Goto NK, Pezacki JP. A new chemical probe for phosphatidylinositol kinase activity. Chembiochem : a European Journal of Chemical Biology. 15: 1253-6. PMID 24850173 DOI: 10.1002/Cbic.201402155  1
2014 Ning Z, Hawley B, Seebun D, Figeys D. APols-aided protein precipitation: a rapid method for concentrating proteins for proteomic analysis. The Journal of Membrane Biology. 247: 941-7. PMID 24838764 DOI: 10.1007/S00232-014-9668-6  1
2014 Wang PW, Abedini MR, Yang LX, Ding AA, Figeys D, Chang JY, Tsang BK, Shieh DB. Gelsolin regulates cisplatin sensitivity in human head-and-neck cancer. International Journal of Cancer. 135: 2760-9. PMID 24771612 DOI: 10.1002/Ijc.28928  1
2014 Chen R, Seebun D, Ye M, Zou H, Figeys D. Site-specific characterization of cell membrane N-glycosylation with integrated hydrophilic interaction chromatography solid phase extraction and LC-MS/MS. Journal of Proteomics. 103: 194-203. PMID 24721674 DOI: 10.1016/J.Jprot.2014.03.040  1
2014 Lanouette S, Mongeon V, Figeys D, Couture JF. The functional diversity of protein lysine methylation. Molecular Systems Biology. 10: 724. PMID 24714364 DOI: 10.1002/Msb.134974  1
2014 McDowell GS, Blanchard AP, Taylor GP, Figeys D, Fai S, Bennett SA. Predicting glycerophosphoinositol identities in lipidomic datasets using VaLID (Visualization and Phospholipid Identification)--an online bioinformatic search engine. Biomed Research International. 2014: 818670. PMID 24701584 DOI: 10.1155/2014/818670  1
2014 Mayne J, Starr AE, Ning Z, Chen R, Chiang CK, Figeys D. Fine tuning of proteomic technologies to improve biological findings: advancements in 2011-2013. Analytical Chemistry. 86: 176-95. PMID 24191679 DOI: 10.1021/Ac403551F  1
2014 Xu H, Franko B, Granger M, Ning Z, Cieniak C, Taylor G, Figeys D, Bennett S. Targeting Glycerophospholipidome To Improve Learning And Memory In The Tgcrnd8 Ad Mouse Model Alzheimers & Dementia. 10. DOI: 10.1016/J.Jalz.2014.05.1503  0.64
2014 Wang Y, Xu H, Blanchard AP, Granger MW, Mazereeuw G, Taylor GP, Sherman S, Ning Z, Lam B, Figeys D, Lanctôt KL, Black S, Bennett SAL. Mining The Neural And Plasma Phospholipidome To Identify Critical Lipid Determinants Of Alzheimer'S Disease Conversion Alzheimers & Dementia. 10: 628. DOI: 10.1016/J.Jalz.2014.05.1093  0.64
2014 Doucet A, Figeys D. Identification of chromatin-binding protein complexes Systems Analysis of Chromatin-Related Protein Complexes in Cancer. 2147483647: 117-131. DOI: 10.1007/978-1-4614-7931-4_6  1
2013 Miller Jenkins LM, Figeys D. Dynamic proteins: changes in structures, activities and networks. The Febs Journal. 280: 5569. PMID 24118971 DOI: 10.1111/Febs.12548  1
2013 Bennett SA, Valenzuela N, Xu H, Franko B, Fai S, Figeys D. Using neurolipidomics to identify phospholipid mediators of synaptic (dys)function in Alzheimer's Disease. Frontiers in Physiology. 4: 168. PMID 23882219 DOI: 10.3389/Fphys.2013.00168  1
2013 Xu H, Valenzuela N, Fai S, Figeys D, Bennett SA. Targeted lipidomics - advances in profiling lysophosphocholine and platelet-activating factor second messengers. The Febs Journal. 280: 5652-67. PMID 23826908 DOI: 10.1111/Febs.12423  1
2013 Fowler SL, Akins M, Zhou H, Figeys D, Bennett SA. The liver connexin32 interactome is a novel plasma membrane-mitochondrial signaling nexus. Journal of Proteome Research. 12: 2597-610. PMID 23590695 DOI: 10.1021/Pr301166P  1
2013 Figeys D. Integrative proteomics. Proteomics. 13: 1231-2. PMID 23580388 DOI: 10.1002/pmic.201370074  1
2013 Mitchell L, Huard S, Cotrut M, Pourhanifeh-Lemeri R, Steunou AL, Hamza A, Lambert JP, Zhou H, Ning Z, Basu A, Côté J, Figeys DA, Baetz K. mChIP-KAT-MS, a method to map protein interactions and acetylation sites for lysine acetyltransferases. Proceedings of the National Academy of Sciences of the United States of America. 110: E1641-50. PMID 23572591 DOI: 10.1073/Pnas.1218515110  1
2013 Ning Z, Seebun D, Hawley B, Chiang CK, Figeys D. From cells to peptides: "one-stop" integrated proteomic processing using amphipols. Journal of Proteome Research. 12: 1512-9. PMID 23394071 DOI: 10.1021/Pr301064Z  1
2013 Wang F, Blanchard AP, Elisma F, Granger M, Xu H, Bennett SA, Figeys D, Zou H. Phosphoproteome analysis of an early onset mouse model (TgCRND8) of Alzheimer's disease reveals temporal changes in neuronal and glia signaling pathways. Proteomics. 13: 1292-305. PMID 23335269 DOI: 10.1002/Pmic.201200415  1
2013 Ryan T, Shelton M, Lambert JP, Malecova B, Boisvenue S, Ruel M, Figeys D, Puri PL, Skerjanc IS. Myosin phosphatase modulates the cardiac cell fate by regulating the subcellular localization of Nkx2.5 in a Wnt/Rho-associated protein kinase-dependent pathway. Circulation Research. 112: 257-66. PMID 23168335 DOI: 10.1161/Circresaha.112.275818  1
2013 Blanchard AP, McDowell GS, Valenzuela N, Xu H, Gelbard S, Bertrand M, Slater GW, Figeys D, Fai S, Bennett SA. Visualization and Phospholipid Identification (VaLID): online integrated search engine capable of identifying and visualizing glycerophospholipids with given mass. Bioinformatics (Oxford, England). 29: 284-5. PMID 23162086 DOI: 10.1093/Bioinformatics/Bts662  1
2013 Yao Z, Zhou H, Figeys D, Wang Y, Sundaram M. Microsome-associated lumenal lipid droplets in the regulation of lipoprotein secretion. Current Opinion in Lipidology. 24: 160-70. PMID 23123764 DOI: 10.1097/Mol.0B013E32835Aebe7  1
2013 Zhu J, Wang F, Cheng K, Song C, Qin H, Hu L, Figeys D, Ye M, Zou H. Analysis of human serum phosphopeptidome by a focused database searching strategy. Journal of Proteomics. 78: 389-97. PMID 23079074 DOI: 10.1016/J.Jprot.2012.10.006  1
2012 Wang F, Wei X, Zhou H, Liu J, Figeys D, Zou H. Combination of online enzyme digestion with stable isotope labeling for high-throughput quantitative proteome analysis. Proteomics. 12: 3129-37. PMID 22945397 DOI: 10.1002/Pmic.201200162  1
2012 Kaluarachchi Duffy S, Friesen H, Baryshnikova A, Lambert JP, Chong YT, Figeys D, Andrews B. Exploring the yeast acetylome using functional genomics. Cell. 149: 936-48. PMID 22579291 DOI: 10.1016/J.Cell.2012.02.064  1
2012 Knight JD, Tian R, Lee RE, Wang F, Beauvais A, Zou H, Megeney LA, Gingras AC, Pawson T, Figeys D, Kothary R. A novel whole-cell lysate kinase assay identifies substrates of the p38 MAPK in differentiating myoblasts. Skeletal Muscle. 2: 5. PMID 22394512 DOI: 10.1186/2044-5040-2-5  1
2012 Zhou H, Ning Z, Starr AE, Abu-Farha M, Figeys D. Advancements in top-down proteomics. Analytical Chemistry. 84: 720-34. PMID 22047528 DOI: 10.1021/Ac202882Y  1
2011 Kurat CF, Lambert JP, van Dyk D, Tsui K, van Bakel H, Kaluarachchi S, Friesen H, Kainth P, Nislow C, Figeys D, Fillingham J, Andrews BJ. Restriction of histone gene transcription to S phase by phosphorylation of a chromatin boundary protein. Genes & Development. 25: 2489-501. PMID 22156209 DOI: 10.1101/Gad.173427.111  1
2011 Abu-Farha M, Lanouette S, Elisma F, Tremblay V, Butson J, Figeys D, Couture JF. Proteomic analyses of the SMYD family interactomes identify HSP90 as a novel target for SMYD2. Journal of Molecular Cell Biology. 3: 301-8. PMID 22028380 DOI: 10.1093/Jmcb/Mjr025  1
2011 Mitchell L, Lau A, Lambert JP, Zhou H, Fong Y, Couture JF, Figeys D, Baetz K. Regulation of septin dynamics by the Saccharomyces cerevisiae lysine acetyltransferase NuA4. Plos One. 6: e25336. PMID 21984913 DOI: 10.1371/Journal.Pone.0025336  1
2011 Song C, Wang F, Ye M, Cheng K, Chen R, Zhu J, Tan Y, Wang H, Figeys D, Zou H. Improvement of the quantification accuracy and throughput for phosphoproteome analysis by a pseudo triplex stable isotope dimethyl labeling approach. Analytical Chemistry. 83: 7755-62. PMID 21902226 DOI: 10.1021/Ac201299J  1
2011 Tian R, Alvarez-Saavedra M, Cheng HY, Figeys D. Uncovering the proteome response of the master circadian clock to light using an AutoProteome system. Molecular & Cellular Proteomics : McP. 10: M110.007252. PMID 21859948 DOI: 10.1074/Mcp.M110.007252  1
2011 Zhou H, Ning Z, Wang F, Seebun D, Figeys D. Proteomic reactors and their applications in biology. The Febs Journal. 278: 3796-806. PMID 21824287 DOI: 10.1111/J.1742-4658.2011.08292.X  1
2011 Wang S, Circu ML, Zhou H, Figeys D, Aw TY, Feng J. Highly sensitive detection of S-nitrosylated proteins by capillary gel electrophoresis with laser induced fluorescence. Journal of Chromatography. A. 1218: 6756-62. PMID 21820121 DOI: 10.1016/J.Chroma.2011.07.062  1
2011 Wang S, Tian R, Li L, Figeys D, Wang L. An enhanced chemically defined SILAC culture system for quantitative proteomics study of human embryonic stem cells. Proteomics. 11: 4040-6. PMID 21770031 DOI: 10.1002/Pmic.201100052  1
2011 Zhou H, Wang F, Wang Y, Ning Z, Hou W, Wright TG, Sundaram M, Zhong S, Yao Z, Figeys D. Improved recovery and identification of membrane proteins from rat hepatic cells using a centrifugal proteomic reactor. Molecular & Cellular Proteomics : McP. 10: O111.008425. PMID 21749988 DOI: 10.1074/Mcp.O111.008425  1
2011 Qin W, Sundaram M, Wang Y, Zhou H, Zhong S, Chang CC, Manhas S, Yao EF, Parks RJ, McFie PJ, Stone SJ, Jiang ZG, Wang C, Figeys D, Jia W, et al. Missense mutation in APOC3 within the C-terminal lipid binding domain of human ApoC-III results in impaired assembly and secretion of triacylglycerol-rich very low density lipoproteins: evidence that ApoC-III plays a major role in the formation of lipid precursors within the microsomal lumen. The Journal of Biological Chemistry. 286: 27769-80. PMID 21676879 DOI: 10.1074/Jbc.M110.203679  1
2011 Al Madhoun AS, Mehta V, Li G, Figeys D, Wiper-Bergeron N, Skerjanc IS. Skeletal myosin light chain kinase regulates skeletal myogenesis by phosphorylation of MEF2C. The Embo Journal. 30: 2477-89. PMID 21556048 DOI: 10.1038/Emboj.2011.153  1
2011 Tian R, Hoa XD, Lambert JP, Pezacki JP, Veres T, Figeys D. Development of a multiplexed microfluidic proteomic reactor and its application for studying protein-protein interactions. Analytical Chemistry. 83: 4095-102. PMID 21520965 DOI: 10.1021/Ac200194D  1
2011 Ning Z, Zhou H, Wang F, Abu-Farha M, Figeys D. Analytical aspects of proteomics: 2009-2010. Analytical Chemistry. 83: 4407-26. PMID 21491952 DOI: 10.1021/Ac200857T  1
2011 Kennedy MA, Kabbani N, Lambert JP, Swayne LA, Ahmed F, Figeys D, Bennett SA, Bryan J, Baetz K. Srf1 is a novel regulator of phospholipase D activity and is essential to buffer the toxic effects of C16:0 platelet activating factor. Plos Genetics. 7: e1001299. PMID 21347278 DOI: 10.1371/Journal.Pgen.1001299  1
2011 Denis N, Palmer-Smith H, Elisma F, Busuttil A, Wright TG, Bou Khalil M, Prat A, Seidah NG, Chrétien M, Mayne J, Figeys D. Quantitative proteomic analysis of PCSK9 gain of function in human hepatic HuH7 cells. Journal of Proteome Research. 10: 2011-26. PMID 21332221 DOI: 10.1021/Pr2000072  1
2011 Hou W, Zhou H, Bou Khalil M, Seebun D, Bennett SA, Figeys D. Lyso-form fragment ions facilitate the determination of stereospecificity of diacyl glycerophospholipids. Rapid Communications in Mass Spectrometry : Rcm. 25: 205-17. PMID 21157865 DOI: 10.1002/Rcm.4846  1
2011 Gyamera-Acheampong C, Sirois F, Denis NJ, Mishra P, Figeys D, Basak A, Mbikay M. The precursor to the germ cell-specific PCSK4 proteinase is inefficiently activated in transfected somatic cells: evidence of interaction with the BiP chaperone. Molecular and Cellular Biochemistry. 348: 43-52. PMID 21080038 DOI: 10.1007/S11010-010-0635-Y  1
2011 Tian R, Wang S, Elisma F, Li L, Zhou H, Wang L, Figeys D. Rare cell proteomic reactor applied to stable isotope labeling by amino acids in cell culture (SILAC)-based quantitative proteomics study of human embryonic stem cell differentiation. Molecular & Cellular Proteomics : McP. 10: M110.000679. PMID 20530636 DOI: 10.1074/Mcp.M110.000679  1
2011 Faragher RJ, McKay CS, Hoa XD, Prikrylova B, Lopinski GP, Figeys D, Veres T, Pezacki JP. Functionalizing poly(cyclic olefins) using copper-catalyzed azide-alkyne "click" reactions Canadian Journal of Chemistry. 89: 608-615. DOI: 10.1139/v11-015  1
2010 Lambert JP, Fillingham J, Siahbazi M, Greenblatt J, Baetz K, Figeys D. Defining the budding yeast chromatin-associated interactome. Molecular Systems Biology. 6: 448. PMID 21179020 DOI: 10.1038/Msb.2010.104  1
2010 Bou Khalil M, Hou W, Zhou H, Elisma F, Swayne LA, Blanchard AP, Yao Z, Bennett SA, Figeys D. Lipidomics era: accomplishments and challenges. Mass Spectrometry Reviews. 29: 877-929. PMID 20931646 DOI: 10.1002/Mas.20294  1
2010 Wall ML, Wheeler HL, Smith J, Figeys D, Altosaar I. Mass spectrometric analysis reveals remnants of host-pathogen molecular interactions at the starch granule surface in wheat endosperm. Phytopathology. 100: 848-54. PMID 20701481 DOI: 10.1094/Phyto-100-9-0848  1
2010 Bou Khalil M, Blais A, Figeys D, Yao Z. Lipin - The bridge between hepatic glycerolipid biosynthesis and lipoprotein metabolism. Biochimica Et Biophysica Acta. 1801: 1249-59. PMID 20692363 DOI: 10.1016/J.Bbalip.2010.07.008  1
2010 Zhou H, Hou W, Lambert JP, Figeys D. New ammunition for the proteomic reactor: strong anion exchange beads and multiple enzymes enhance protein identification and sequence coverage. Analytical and Bioanalytical Chemistry. 397: 3421-30. PMID 20517600 DOI: 10.1007/S00216-010-3791-8  1
2010 Labriola JM, daCosta CJ, Wang S, Figeys D, Smith JC, Sturgeon RM, Baenziger JE. Phospholipase C activity affinity purifies with the Torpedo nicotinic acetylcholine receptor. The Journal of Biological Chemistry. 285: 10337-43. PMID 20133947 DOI: 10.1074/Jbc.M109.071993  1
2010 Sundaram M, Zhong S, Bou Khalil M, Zhou H, Jiang ZG, Zhao Y, Iqbal J, Hussain MM, Figeys D, Wang Y, Yao Z. Functional analysis of the missense APOC3 mutation Ala23Thr associated with human hypotriglyceridemia. Journal of Lipid Research. 51: 1524-34. PMID 20097930 DOI: 10.1194/Jlr.M005108  1
2010 Zhou H, Hou W, Lambert JP, Tian R, Figeys D. Analysis of low-abundance proteins using the proteomic reactor with pH fractionation. Talanta. 80: 1526-31. PMID 20082810 DOI: 10.1016/J.Talanta.2009.07.018  1
2010 Zhou H, Elisma F, Denis NJ, Wright TG, Tian R, Zhou H, Hou W, Zou H, Figeys D. Analysis of the subcellular phosphoproteome using a novel phosphoproteomic reactor. Journal of Proteome Research. 9: 1279-88. PMID 20067319 DOI: 10.1021/Pr900767J  1
2010 Zhong S, Magnolo AL, Sundaram M, Zhou H, Yao EF, Di Leo E, Loria P, Wang S, Bamji-Mirza M, Wang L, McKnight CJ, Figeys D, Wang Y, Tarugi P, Yao Z. Nonsynonymous mutations within APOB in human familial hypobetalipoproteinemia: evidence for feedback inhibition of lipogenesis and postendoplasmic reticulum degradation of apolipoprotein B. The Journal of Biological Chemistry. 285: 6453-64. PMID 20032471 DOI: 10.1074/Jbc.M109.060467  1
2010 Lambert JP, Baetz K, Figeys D. Of proteins and DNA--proteomic role in the field of chromatin research. Molecular Biosystems. 6: 30-7. PMID 20024064 DOI: 10.1039/B907925B  1
2010 Gyamera-Acheampong C, Vasilescu J, Figeys D, Mbikay M. PCSK4-null sperm display enhanced protein tyrosine phosphorylation and ADAM2 proteolytic processing during in vitro capacitation. Fertility and Sterility. 93: 1112-23. PMID 19342015 DOI: 10.1016/J.Fertnstert.2008.12.013  1
2010 Wall ML, Wheeler HL, Huebsch MP, Smith JC, Figeys D, Altosaar I. The tryptophan-rich domain of puroindoline is directly associated with the starch granule surface as judged by tryptic shaving and mass spectrometry Journal of Cereal Science. 52: 115-120. DOI: 10.1016/J.Jcs.2010.04.002  1
2009 Ryan SD, Whitehead SN, Swayne LA, Moffat TC, Hou W, Ethier M, Bourgeois AJ, Rashidian J, Blanchard AP, Fraser PE, Park DS, Figeys D, Bennett SA. Amyloid-beta42 signals tau hyperphosphorylation and compromises neuronal viability by disrupting alkylacylglycerophosphocholine metabolism. Proceedings of the National Academy of Sciences of the United States of America. 106: 20936-41. PMID 19926863 DOI: 10.1073/Pnas.0905654106  1
2009 Fillingham J, Kainth P, Lambert JP, van Bakel H, Tsui K, Peña-Castillo L, Nislow C, Figeys D, Hughes TR, Greenblatt J, Andrews BJ. Two-color cell array screen reveals interdependent roles for histone chaperones and a chromatin boundary regulator in histone gene repression. Molecular Cell. 35: 340-51. PMID 19683497 DOI: 10.1016/J.Molcel.2009.06.023  1
2009 Abu-Farha M, Elisma F, Zhou H, Tian R, Zhou H, Asmer MS, Figeys D. Proteomics: from technology developments to biological applications. Analytical Chemistry. 81: 4585-99. PMID 19371061 DOI: 10.1021/Ac900735J  1
2009 Lambert JP, Mitchell L, Rudner A, Baetz K, Figeys D. A novel proteomics approach for the discovery of chromatin-associated protein networks. Molecular & Cellular Proteomics : McP. 8: 870-82. PMID 19106085 DOI: 10.1074/Mcp.M800447-Mcp200  1
2009 Zhou H, Hou W, Denis NJ, Zhou H, Vasilescu J, Zou H, Figeys D. Glycoproteomic reactor for human plasma. Journal of Proteome Research. 8: 556-66. PMID 19067587 DOI: 10.1021/Pr800734R  1
2009 Bhattacharya S, Shcherbik N, Vasilescu J, Smith JC, Figeys D, Haines DS. Identification of lysines within membrane-anchored Mga2p120 that are targets of Rsp5p ubiquitination and mediate mobilization of tethered Mga2p90. Journal of Molecular Biology. 385: 718-25. PMID 19061897 DOI: 10.1016/J.Jmb.2008.11.018  1
2008 Smith JC, Hou W, Whitehead SN, Ethier M, Bennett SA, Figeys D. Identification of lysophosphatidylcholine (LPC) and platelet activating factor (PAF) from PC12 cells and mouse cortex using liquid chromatography/multi-stage mass spectrometry (LC/MS3). Rapid Communications in Mass Spectrometry : Rcm. 22: 3579-87. PMID 18937225 DOI: 10.1002/Rcm.3768  1
2008 Bazile F, Gagné JP, Mercier G, Lo KS, Pascal A, Vasilescu J, Figeys D, Poirier GG, Kubiak JZ, Chesnel F. Differential proteomic screen to evidence proteins ubiquitinated upon mitotic exit in cell-free extract of Xenopus laevis embryos. Journal of Proteome Research. 7: 4701-14. PMID 18823142 DOI: 10.1021/Pr800250X  1
2008 Wislet-Gendebien S, Visanji NP, Whitehead SN, Marsilio D, Hou W, Figeys D, Fraser PE, Bennett SA, Tandon A. Differential regulation of wild-type and mutant alpha-synuclein binding to synaptic membranes by cytosolic factors. Bmc Neuroscience. 9: 92. PMID 18808659 DOI: 10.1186/1471-2202-9-92  1
2008 Hou W, Zhou H, Elisma F, Bennett SA, Figeys D. Technological developments in lipidomics. Briefings in Functional Genomics & Proteomics. 7: 395-409. PMID 18805902 DOI: 10.1093/Bfgp/Eln042  1
2008 Figeys D. Mapping the human protein interactome. Cell Research. 18: 716-24. PMID 18574500 DOI: 10.1038/Cr.2008.72  1
2008 Smith JC, Figeys D. Recent developments in mass spectrometry-based quantitative phosphoproteomics. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 86: 137-48. PMID 18443627 DOI: 10.1139/O08-007  1
2008 Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Björling E, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, ... ... Figeys D, et al. Human Proteinpedia enables sharing of human protein data. Nature Biotechnology. 26: 164-7. PMID 18259167 DOI: 10.1038/Nbt0208-164  1
2008 Abu-Farha M, Elisma F, Figeys D. Identification of protein-protein interactions by mass spectrometry coupled techniques. Advances in Biochemical Engineering/Biotechnology. 110: 67-80. PMID 18227982 DOI: 10.1007/10_2007_091  1
2008 Mitchell L, Lambert JP, Gerdes M, Al-Madhoun AS, Skerjanc IS, Figeys D, Baetz K. Functional dissection of the NuA4 histone acetyltransferase reveals its role as a genetic hub and that Eaf1 is essential for complex integrity. Molecular and Cellular Biology. 28: 2244-56. PMID 18212056 DOI: 10.1128/Mcb.01653-07  1
2008 Abu-Farha M, Lambert JP, Al-Madhoun AS, Elisma F, Skerjanc IS, Figeys D. The tale of two domains: proteomics and genomics analysis of SMYD2, a new histone methyltransferase. Molecular & Cellular Proteomics : McP. 7: 560-72. PMID 18065756 DOI: 10.1074/Mcp.M700271-Mcp200  1
2008 Vasilescu J, Smith JC, Zweitzig DR, Denis NJ, Haines DS, Figeys D. Systematic determination of ion score cutoffs based on calculated false positive rates: application for identifying ubiquitinated proteins by tandem mass spectrometry. Journal of Mass Spectrometry : Jms. 43: 296-304. PMID 17957819 DOI: 10.1002/Jms.1297  1
2008 Figeys D. Two-Dimensional Gel Electrophoresis and Mass Spectrometry for Proteomic Studies: State-of-the-Art Biotechnology: Second, Completely Revised Edition. 5: 241-268. DOI: 10.1002/9783527620999.ch10e  1
2007 Whitehead SN, Hou W, Ethier M, Smith JC, Bourgeois A, Denis R, Bennett SA, Figeys D. Identification and quantitation of changes in the platelet activating factor family of glycerophospholipids over the course of neuronal differentiation by high-performance liquid chromatography electrospray ionization tandem mass spectrometry. Analytical Chemistry. 79: 8539-48. PMID 17949058 DOI: 10.1021/Ac0712291  1
2007 Sopko R, Huang D, Smith JC, Figeys D, Andrews BJ. Activation of the Cdc42p GTPase by cyclin-dependent protein kinases in budding yeast. The Embo Journal. 26: 4487-500. PMID 17853895 DOI: 10.1038/Sj.Emboj.7601847  1
2007 Smith JC, Duchesne MA, Tozzi P, Ethier M, Figeys D. A differential phosphoproteomic analysis of retinoic acid-treated P19 cells. Journal of Proteome Research. 6: 3174-86. PMID 17622165 DOI: 10.1021/Pr070122R  1
2007 Smith JC, Lambert JP, Elisma F, Figeys D. Proteomics in 2005/2006: developments, applications and challenges. Analytical Chemistry. 79: 4325-43. PMID 17477510 DOI: 10.1021/Ac070741J  1
2007 Denis NJ, Vasilescu J, Lambert JP, Smith JC, Figeys D. Tryptic digestion of ubiquitin standards reveals an improved strategy for identifying ubiquitinated proteins by mass spectrometry. Proteomics. 7: 868-74. PMID 17370265 DOI: 10.1002/Pmic.200600410  1
2007 Ewing RM, Chu P, Elisma F, Li H, Taylor P, Climie S, McBroom-Cerajewski L, Robinson MD, O'Connor L, Li M, Taylor R, Dharsee M, Ho Y, Heilbut A, Moore L, ... ... Figeys D, et al. Large-scale mapping of human protein-protein interactions by mass spectrometry. Molecular Systems Biology. 3: 89. PMID 17353931 DOI: 10.1038/Msb4100134  1
2007 Vasilescu J, Zweitzig DR, Denis NJ, Smith JC, Ethier M, Haines DS, Figeys D. The proteomic reactor facilitates the analysis of affinity-purified proteins by mass spectrometry: application for identifying ubiquitinated proteins in human cells. Journal of Proteome Research. 6: 298-305. PMID 17203973 DOI: 10.1021/Pr060438J  1
2007 Hou W, Ethier M, Smith JC, Sheng Y, Figeys D. Multiplexed proteomic reactor for the processing of proteomic samples. Analytical Chemistry. 79: 39-44. PMID 17194119 DOI: 10.1021/Ac061248V  1
2007 Lee JW, Figeys D, Vasilescu J. Biomarker assay translation from discovery to clinical studies in cancer drug development: quantification of emerging protein biomarkers. Advances in Cancer Research. 96: 269-98. PMID 17161683 DOI: 10.1016/S0065-230X(06)96010-2  1
2006 Ethier M, Lambert JP, Vasilescu J, Figeys D. Analysis of protein interaction networks using mass spectrometry compatible techniques. Analytica Chimica Acta. 564: 10-8. PMID 17723357 DOI: 10.1016/J.Aca.2005.12.046  1
2006 Ethier M, Hou W, Duewel HS, Figeys D. The proteomic reactor: a microfluidic device for processing minute amounts of protein prior to mass spectrometry analysis. Journal of Proteome Research. 5: 2754-9. PMID 17022646 DOI: 10.1021/Pr060312M  1
2006 Smith JC, Figeys D. Proteomics technology in systems biology. Molecular Biosystems. 2: 364-70. PMID 16880956 DOI: 10.1039/B606798K  1
2006 Vasilescu J, Figeys D. Mapping protein-protein interactions by mass spectrometry. Current Opinion in Biotechnology. 17: 394-9. PMID 16822661 DOI: 10.1016/J.Copbio.2006.06.008  1
2006 Ethier M, Figeys D, Perreault H. N-glycosylation analysis using the StrOligo algorithm. Methods in Molecular Biology (Clifton, N.J.). 328: 187-97. PMID 16785650 DOI: 10.1385/1-59745-026-X:187  1
2005 Figeys D. Mapping protein-protein interactions. Methods of Biochemical Analysis. 45: 63-84. PMID 19235291  1
2005 Figeys D. Proteomics: the basic overview. Methods of Biochemical Analysis. 45: 1-62. PMID 19235290  1
2005 Ethier M, Figeys D. Strategy to design improved proteomic experiments based on statistical analyses of the chemical properties of identified peptides. Journal of Proteome Research. 4: 2201-6. PMID 16335967 DOI: 10.1021/Pr050290O  1
2005 Vasilescu J, Smith JC, Ethier M, Figeys D. Proteomic analysis of ubiquitinated proteins from human MCF-7 breast cancer cells by immunoaffinity purification and mass spectrometry. Journal of Proteome Research. 4: 2192-200. PMID 16335966 DOI: 10.1021/Pr050265I  1
2005 Lambert JP, Ethier M, Smith JC, Figeys D. Proteomics: from gel based to gel free. Analytical Chemistry. 77: 3771-87. PMID 15952756 DOI: 10.1021/Ac050586D  1
2005 Boutilier K, Ross M, Podtelejnikov AV, Orsi C, Taylor R, Taylor P, Figeys D. Comparison of different search engines using validated MS/MS test datasets Analytica Chimica Acta. 534: 11-20. DOI: 10.1016/J.Aca.2004.04.047  1
2004 Le Bihan T, Robinson MD, Stewart II, Figeys D. Definition and characterization of a "trypsinosome" from specific peptide characteristics by nano-HPLC-MS/MS and in silico analysis of complex protein mixtures. Journal of Proteome Research. 3: 1138-48. PMID 15595722 DOI: 10.1021/Pr049909X  1
2004 Stewart II, Zhao L, Le Bihan T, Larsen B, Scozzaro S, Figeys D, Mao GD, Ornatsky O, Dharsee M, Orsi C, Ewing R, Goh T. The reproducible acquisition of comparative liquid chromatography/tandem mass spectrometry data from complex biological samples Rapid Communications in Mass Spectrometry. 18: 1697-1710. PMID 15282768 DOI: 10.1002/Rcm.1538  1
2004 Figeys D. Combining different 'omics' technologies to map and validate protein-protein interactions in humans. Briefings in Functional Genomics & Proteomics. 2: 357-65. PMID 15163370 DOI: 10.1093/Bfgp/2.4.357  1
2004 Olsen JV, Andersen JR, Nielsen PA, Nielsen ML, Figeys D, Mann M, Wisniewski JR. HysTag--a novel proteomic quantification tool applied to differential display analysis of membrane proteins from distinct areas of mouse brain. Molecular & Cellular Proteomics : McP. 3: 82-92. PMID 14610161 DOI: 10.1074/Mcp.M300103-Mcp200  1
2003 Figeys D. Proteomics in 2002: a year of technical development and wide-ranging applications. Analytical Chemistry. 75: 2891-905. PMID 12945794 DOI: 10.1021/Ac030142M  1
2003 Le Bihan T, Duewel HS, Figeys D. On-line strong cation exchange micro-HPLC-ESI-MS/MS for protein identification and process optimization. Journal of the American Society For Mass Spectrometry. 14: 719-27. PMID 12837593 DOI: 10.1016/S1044-0305(03)00208-3  1
2003 Figeys D. Novel approaches to map protein interactions. Current Opinion in Biotechnology. 14: 119-25. PMID 12566011 DOI: 10.1016/S0958-1669(02)00005-8  1
2002 Lin Y, Khokhlatchev A, Figeys D, Avruch J. Death-associated protein 4 binds MST1 and augments MST1-induced apoptosis Journal of Biological Chemistry. 277: 47991-48001. PMID 12384512 DOI: 10.1074/Jbc.M202630200  1
2002 Figeys D. Proteomics approaches in drug discovery Analytical Chemistry. 74. PMID 12175190 DOI: 10.1021/Ac022079R  1
2002 Figeys D. Adapting arrays and lab-on-a-chip technology for proteomics Proteomics. 2: 373-382. PMID 12164696 DOI: 10.1002/1615-9861(200204)2:4<373::Aid-Prot373>3.0.Co;2-I  1
2002 Figeys D. Functional proteomics: Mapping protein-protein interactions and pathways Current Opinion in Molecular Therapeutics. 4: 210-215. PMID 12139305  1
2002 Figeys D, Rossetto F. Finding the 'lost' genes Trends in Biotechnology. 20: 144. PMID 11906742 DOI: 10.1016/S0167-7799(02)01947-9  1
2002 Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K, Yang L, Wolting C, Donaldson I, Schandorff S, Shewnarane J, ... ... Figeys D, et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature. 415: 180-3. PMID 11805837 DOI: 10.1038/415180A  1
2002 Figeys D. Single-cell genome expression analysis? Trends in Biotechnology. 20: 449. DOI: 10.1016/S0167-7799(02)02068-1  1
2002 Figeys D. Mapping the switchboard of cellular biology by mass spectrometry Trends in Biotechnology. 20: 234. DOI: 10.1016/S0167-7799(02)01971-6  1
2002 Bunkenborg J, Stewart I, Figeys D, Le Blanc JCY, Chu I, Gamble T, Podtelejnikov A, Mann M. Q trap - A new tool for proteomic research Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 179-180.  1
2002 Larsen B, White F, Chen J, Ornatsky O, Marto J, Caldwell J, Orsi C, Dahzee M, Wang Z, Figeys D. Phosphorylation analysis (phosmap) of complex protein mixtures Proceedings 50th Asms Conference On Mass Spectrometry and Allied Topics. 165-166.  1
2001 Stewart II, Thomson T, Figeys D. 18O labeling: a tool for proteomics. Rapid Communications in Mass Spectrometry : Rcm. 15: 2456-65. PMID 11746917 DOI: 10.1002/Rcm.525  1
2001 Figeys D, McBroom LD, Moran MF. Mass spectrometry for the study of protein-protein interactions. Methods (San Diego, Calif.). 24: 230-9. PMID 11403572 DOI: 10.1006/Meth.2001.1184  1
2001 Bihan TL, Pinto D, Figeys D. Nanoflow gradient generator coupled with μ-LC-ESI-MS/MS for protein identification Analytical Chemistry. 73: 1307-1315. PMID 11305668 DOI: 10.1021/Ac000948B  1
2001 Figeys D, Pinto D. Proteomics on a chip: Promising developments Electrophoresis. 22: 208-216. PMID 11288886 DOI: 10.1002/1522-2683(200101)22:2<208::Aid-Elps208>3.0.Co;2-O  1
2001 de Hoog CL, Koehler JA, Goldstein MD, Taylor P, Figeys D, Moran MF. Ras binding triggers ubiquitination of the Ras exchange factor Ras-GRF2. Molecular and Cellular Biology. 21: 2107-17. PMID 11238945 DOI: 10.1128/Mcb.21.6.2107-2117.2001  1
2001 Figeys D. Web surfing in yeast: a network of proteins Trends in Biotechnology. 19: 85-86. PMID 11179784 DOI: 10.1016/S0167-7799(00)01546-8  1
2000 Figeys D. The Achilles' heel of proteomics Trends in Biotechnology. 18: 483. PMID 11102657 DOI: 10.1016/S0167-7799(00)01507-9  1
2000 Figeys D. Large-scale screening on small scale Trends in Biotechnology. 18: 363-364. PMID 10942958 DOI: 10.1016/S0167-7799(00)01479-7  1
2000 Locke S, Figeys D. Techniques for the optimization of proteomic strategies based on head column stacking capillary electrophoresis. Analytical Chemistry. 72: 2684-9. PMID 10905293 DOI: 10.1021/Ac0003293  1
2000 Pinto DM, Ning Y, Figeys D. An enhanced microfluidic chip coupled to an electrospray Qstar mass spectrometer for protein identification Electrophoresis. 21: 181-190. PMID 10634486 DOI: 10.1002/(Sici)1522-2683(20000101)21:1<181::Aid-Elps181>3.0.Co;2-Q  1
2000 Figeys D, Pinto D. Lab-on-a-chip: A revolution in biological and medical sciences Analytical Chemistry. 72. DOI: 10.1021/Ac002800Y  1
2000 Haynes PA, Goodlett DR, Gygi SP, Watts JD, Figeys D, Aebersold R. Towards an Integrated Analytical Technology for the Generation of Multidimensional Protein Expression Maps Journal of Protein Chemistry. 17: 143-162. DOI: 10.1007/978-1-59259-719-2_9  1
1999 Figeys D. Array and lab on a chip technology for protein characterization Current Opinion in Molecular Therapeutics. 1: 685-694. PMID 19629865  1
1999 Gallis B, Corthals GL, Goodlett DR, Ueba H, Kim F, Presnell SR, Figeys D, Harrison DG, Berk BC, Aebersold R, Corson MA. Identification of flow-dependent endothelial nitric-oxide synthase phosphorylation sites by mass spectrometry and regulation of phosphorylation and nitric oxide production by the phosphatidylinositol 3-kinase inhibitor LY294002 Journal of Biological Chemistry. 274: 30101-30108. PMID 10514497 DOI: 10.1074/Jbc.274.42.30101  1
1999 Figeys D. Data-dependent modulation of solid-phase extraction capillary electrophoresis for the analysis of complex peptide and phosphopeptide mixtures by tandem mass spectrometry: Application to endothelial nitric oxide synthase Analytical Chemistry. 71: 2279-2287. PMID 10405598 DOI: 10.1021/Ac9813991  1
1999 Figeys D, Aebersold R. Microfabricated modules for sample handling, sample concentration and flow mixing: Application to protein analysis by tandem mass spectrometry Journal of Biomechanical Engineering. 121: 7-12. PMID 10080083 DOI: 10.1115/1.2798048  1
1999 Figeys D, Aebersold R, Lock C. Injection-molded, polymeric microfluidic devices coupled to electrospray ionization tandem mass spectrometers for protein identification Journal of Capillary Electrophoresis and Microchip Technology. 6: 1-6.  1
1998 Figeys D, Lock C, Taylor L, Aebersold R. Microfabricated device coupled with an electrospray ionization quadrupole time-of-flight mass spectrometer: Protein identifications based on enhanced-resolution mass spectrometry and tandem mass spectrometry data Rapid Communications in Mass Spectrometry. 12: 1435-1444. PMID 9796531 DOI: 10.1002/(Sici)1097-0231(19981030)12:20<1435::Aid-Rcm349>3.0.Co;2-9  1
1998 Figeys D, Zhang Y, Aebersold R. Optimization of solid phase microextraction - Capillary zone electrophoresis - Mass spectrometry for high sensitivity protein identification Electrophoresis. 19: 2338-2347. PMID 9788318 DOI: 10.1002/Elps.1150191314  1
1998 Figeys D, Gygi SP, McKinnon G, Aebersold R. An Integrated Microfluidics-Tandem Mass Spectrometry System for Automated Protein Analysis Analytical Chemistry. 70: 3728-3734. PMID 9751017 DOI: 10.1021/Ac980320P  1
1998 Figeys D, Aebersold R. Nanoflow Solvent Gradient Delivery from a Microfabricated Device for Protein Identifications by Electrospray Ionization Mass Spectrometry Analytical Chemistry. 70: 3721-3727. PMID 9751016 DOI: 10.1021/Ac980502J  1
1998 Haynes PA, Gygi SP, Figeys D, Aebersold R. Proteome analysis: biological assay or data archive? Electrophoresis. 19: 1862-71. PMID 9740046 DOI: 10.1002/Elps.1150191104  1
1998 Aebersold R, Figeys D, Gygi S, Corthals G, Haynes P, Rist B, Sherman J, Zhang Y, Goodlett D. Towards an integrated analytical technology for the generation of multidimensional protein expression maps. Journal of Protein Chemistry. 17: 533-5. PMID 9723742  1
1998 Figeys D, Gygi SP, Zhang Y, Watts J, Gu M, Aebersold R. Electrophoresis combined with novel mass spectrometry techniques: Powerful tools for the analysis of proteins and proteomes Electrophoresis. 19: 1811-1818. PMID 9719564 DOI: 10.1002/Elps.1150191045  1
1998 Zhang Y, Figeys D, Aebersold R. Purification of trypsin for mass spectrometric identification of proteins at high sensitivity Analytical Biochemistry. 261: 124-127. PMID 9683523 DOI: 10.1006/Abio.1998.2666  1
1998 Figeys D, Aebersold R. High sensitivity analysis of proteins and peptides by capillary electrophoresis-tandem mass spectrometry: Recent developments in technology and applications Electrophoresis. 19: 885-892. PMID 9638934 DOI: 10.1002/Elps.1150190603  1
1998 Aebersold R, Figeys D, Gygi S, Corthals G, Haynes P, Rist B, Sherman J, Zhang Y, Goodlett D. Towards an Integrated Analytical Technology for the Generation of Multidimensional Protein Expression Maps Protein Journal. 17: 533.  1
1997 Figeys D, Aebersold R. Capillary electrophoresis of peptides and proteins at neutral pH in capillaries covalently coated with polyethyleneimine Journal of Chromatography B: Biomedical Applications. 695: 163-168. PMID 9271140 DOI: 10.1016/S0378-4347(97)00022-4  1
1997 Figeys D, Ning Y, Aebersold R. A Microfabricated Device for Rapid Protein Identification by Microelectrospray Ion Trap Mass Spectrometry Analytical Chemistry. 69: 3153-3160. PMID 9271059 DOI: 10.1021/Ac970057C  1
1997 Figeys D, Aebersold R. High sensitivity identification of proteins by electrospray ionization tandem mass spectrometry: Initial comparison between, an ion trap mass spectrometer and a triple quadrupole mass spectrometer Electrophoresis. 18: 360-368. PMID 9150914 DOI: 10.1002/Elps.1150180310  1
1997 Figeys D, Ducret A, Aebersold R. Identification of proteins by capillary electrophoresis-tandem mass spectrometry. Evaluation of an on-line solid-phase extraction device Journal of Chromatography A. 763: 295-306. PMID 9129327 DOI: 10.1016/S0021-9673(96)00847-3  1
1997 Figeys D, Aebersold R. Methods in Enzymology,Volumes 270 and 271,High-Resolution Separation and Analysis of Biological Macromolecules.Edited by Barry L. Karger and William S. Hancock Analytical Biochemistry. 246: 268-269. DOI: 10.1006/Abio.1996.9967  0.36
1996 Figeys D, Ducret A, Yates JR, Aebersold R. Protein Identification by Solid Phase Microextraction–Capillary Zone Electrophoresis–Microelectrospray–Tandem Mass Spectrometry Nature Biotechnology. 14: 1579-1583. PMID 9634825 DOI: 10.1038/Nbt1196-1579  1
1996 Figeys D, Ahmadzedeh H, Arriaga E, Dovichi NJ. Pseudo-coulometric loading in capillary electrophoresis DNA sequencing Journal of Chromatography A. 744: 325-331. PMID 8843681 DOI: 10.1016/0021-9673(96)00438-4  1
1996 Figeys D, Van Oostveen I, Ducret A, Aebersold R. Protein identification by capillary zone electrophoresis/microelectrospray ionization-tandem mass spectrometry at the subfemtomole level Analytical Chemistry. 68: 1822-1828. PMID 8686909 DOI: 10.1021/Ac960191H  1
1996 Figeys D, Dovichi NJ. Change in conductivity in non-cross-linked polyacrylamide capillary electrophoresis. Effects of aging polyacrylamide and buffer composition Journal of Chromatography A. 744: 333-339. DOI: 10.1016/0021-9673(96)00439-6  1
1995 Figeys D, Dovichi NJ. Effect of the age of non-cross-linked polyacrylamide on the separation of DNA sequencing samples Journal of Chromatography A. 717: 105-111. DOI: 10.1016/0021-9673(95)00650-9  1
1995 Figeys D, Dovichi NJ. Multiple separations of DNA sequencing fragments with a non-cross-linked polyacrylamide-filled capillary: capillary electrophoresis at 300 V/cm Journal of Chromatography A. 717: 113-116. DOI: 10.1016/0021-9673(95)00649-2  1
1994 Lu H, Arriaga E, Da YC, Figeys D, Dovichi NJ. Activation energy of single-stranded DNA moving through cross-linked polyacrylamide gels at 300 V/cm effect of temperature on sequencing rate in high-electric-field capillary gel electrophoresis Journal of Chromatography A. 680: 503-510. PMID 7981831 DOI: 10.1016/0021-9673(94)85149-2  1
1994 Figeys D, Renborg A, Dovichi NJ. Labeling of double-stranded DNA by ROX-dideoxycytosine triphosphate using terminal deoxynucleotidyl transferase and separation by capillary electrophoresis Analytical Chemistry. 66: 4382-4383. PMID 7847633 DOI: 10.1021/Ac00095A041  1
1994 Figeys D, Renborg A, Dovichi NJ. Spatial and temporal depletion of ions from noncrosslinked denaturing polyacrylamide in capillary electrophoresis Electrophoresis. 15: 1512-1517. PMID 7720687 DOI: 10.1002/Elps.11501501216  1
1994 Figeys D, Arriaga E, Renborg A, Dovichi NJ. Use of the fluorescent intercalating dyes POPO-3, YOYO-3 and YOYO-1 for ultrasensitive detection of double-stranded DNA separated by capillary electrophoresis with hydroxypropylmethyl cellulose and non-cross-linked polyacrylamide Journal of Chromatography A. 669: 205-216. DOI: 10.1016/0021-9673(94)80349-8  1
1993 Figeys D, Dovichi NJ. Mobility of single-stranded DNA as a function of cross-linker concentration in polyacrylamide capillary gel electrophoresis Journal of Chromatography A. 645: 311-317. DOI: 10.1016/0021-9673(93)83391-5  1
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